Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 242 results

5OIZ
DownloadVisualize
BU of 5oiz by Molmil
Penicillin-Binding Protein 2X (PBP2X) from Streptococcus pneumoniae in complex with oxacillin
Descriptor: (2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid, Penicillin-binding protein 2X
Authors:Bernardo-Garcia, N, Hermoso, J.A.
Deposit date:2017-07-20
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Allostery, Recognition of Nascent Peptidoglycan, and Cross-linking of the Cell Wall by the Essential Penicillin-Binding Protein 2x of Streptococcus pneumoniae.
ACS Chem. Biol., 13, 2018
6T98
DownloadVisualize
BU of 6t98 by Molmil
Trypanothione Reductase from Leishmania infantum in complex with 9a
Descriptor: 4-[3-methyl-1-[4-[4-(2-phenylethyl)-1,3-thiazol-2-yl]-3-(2-piperidin-4-ylethoxy)phenyl]-1,2,3-triazol-3-ium-4-yl]butan-1-amine, DIMETHYL SULFOXIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Carriles, A.A, Hermoso, J.A.
Deposit date:2019-10-26
Release date:2020-11-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Identification of 1,2,3-triazolium salt-based inhibitors of Leishmania infantum trypanothione disulfide reductase with enhanced antileishmanial potency in cellulo and increased selectivity.
Eur.J.Med.Chem., 244, 2022
6T95
DownloadVisualize
BU of 6t95 by Molmil
Trypanothione Reductase from Leismania infantum in complex with 4a
Descriptor: 1-[2-[5-[4-(4-azanylbutyl)-3-methyl-1,2,3-triazol-3-ium-1-yl]-2-[4-(2-phenylethyl)-1,3-thiazol-2-yl]phenoxy]ethyl]imidazolidin-2-one, DIMETHYL SULFOXIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Carriles, A.A, Hermoso, J.A.
Deposit date:2019-10-25
Release date:2020-11-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identification of 1,2,3-triazolium salt-based inhibitors of Leishmania infantum trypanothione disulfide reductase with enhanced antileishmanial potency in cellulo and increased selectivity.
Eur.J.Med.Chem., 244, 2022
6T97
DownloadVisualize
BU of 6t97 by Molmil
Trypanothione Reductase from Leismania infantum in complex with TRL190
Descriptor: 4-[1-[4-[4-(2-phenylethyl)-1,3-thiazol-2-yl]-3-(2-piperidin-4-ylethoxy)phenyl]-1,2,3-triazol-4-yl]butan-1-amine, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Carriles, A, Hermoso, J.A.
Deposit date:2019-10-26
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Scaffold hopping identifies new triazole-and triazolium-based inhibitors of Leishmania infantum Trypanothione Reductase with potent and selective antileishmanial activity
To Be Published
1GWY
DownloadVisualize
BU of 1gwy by Molmil
Crystal structure of the water-soluble state of the pore-forming cytolysin Sticholysin II
Descriptor: STICHOLYSIN II, SULFATE ION
Authors:Mancheno, J.M, Martin-Benito, J, Martinez-Ripoll, M, Gavilanes, J.G, Hermoso, J.A.
Deposit date:2002-03-26
Release date:2003-06-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal and Electron Microscopy Structures of Sticholysin II Actinoporin Reveal Insights Into the Mechanism of Membrane Pore Formation
Structure, 11, 2003
1E4I
DownloadVisualize
BU of 1e4i by Molmil
2-deoxy-2-fluoro-beta-D-glucosyl/enzyme intermediate complex of the beta-glucosidase from Bacillus polymyxa
Descriptor: 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside, 2-deoxy-2-fluoro-alpha-D-glucopyranose, BETA-GLUCOSIDASE
Authors:Sanz-Aparicio, J, Gonzalez, B, Hermoso, J.A, Arribas, J.C, Canada, F.J, Polaina, J.
Deposit date:2000-07-06
Release date:2001-07-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Increased Resistance to Thermal Denaturation Induced by Single Amino Acid Substitution in the Sequence of Beta-Glucosidase a from Bacillus Polymyxa.
Proteins: Struct.,Funct., Genet., 33, 1998
2BJH
DownloadVisualize
BU of 2bjh by Molmil
Crystal Structure Of S133A AnFaeA-ferulic acid complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, ...
Authors:Faulds, C.B, Molina, R, Gonzalez, R, Husband, F, Juge, N, Sanz-Aparicio, J, Hermoso, J.A.
Deposit date:2005-02-02
Release date:2005-09-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Probing the Determinants of Substrate Specificity of a Feruloyl Esterase, Anfaea, from Aspergillus Niger
FEBS J., 272, 2005
8RHI
DownloadVisualize
BU of 8rhi by Molmil
Lytic Transglycosylase MltD of Pseudomonas aeruginosa in a ternary complex bound to Bulgecin A and chito-tetraose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, ...
Authors:Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2023-12-15
Release date:2024-04-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural characterization of lytic transglycosylase MltD of Pseudomonas aeruginosa, a target for the natural product bulgecin A.
Int.J.Biol.Macromol., 267, 2024
8RHE
DownloadVisualize
BU of 8rhe by Molmil
Lytic Transglycosylase MltD of Pseudomonas aeruginosa bound to the Natural Product Bulgecin A
Descriptor: 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, LysM peptidoglycan-binding domain-containing protein, ZINC ION
Authors:Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2023-12-15
Release date:2024-04-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of lytic transglycosylase MltD of Pseudomonas aeruginosa, a target for the natural product bulgecin A.
Int.J.Biol.Macromol., 267, 2024
8RHF
DownloadVisualize
BU of 8rhf by Molmil
Lytic Transglycosylase MltD of Pseudomonas aeruginosa bound to the Natural Product Bulgecin A, with two LysM domains
Descriptor: 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, DI(HYDROXYETHYL)ETHER, LysM peptidoglycan-binding domain-containing protein, ...
Authors:Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2023-12-15
Release date:2024-04-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of lytic transglycosylase MltD of Pseudomonas aeruginosa, a target for the natural product bulgecin A.
Int.J.Biol.Macromol., 267, 2024
2BMV
DownloadVisualize
BU of 2bmv by Molmil
Apoflavodoxin from Helicobacter pylori
Descriptor: BENZAMIDINE, CHLORIDE ION, FLAVODOXIN
Authors:Martinez-Julvez, M, Hermoso, J.A, Sancho, J, Perez-Dorado, I, Cremades, N, Bueno, M.
Deposit date:2005-03-16
Release date:2006-06-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Common Conformational Changes in Flavodoxins Induced by Fmn and Anion Binding: The Structure of Helicobacter Pylori Apoflavodoxin.
Proteins, 69, 2007
2C5R
DownloadVisualize
BU of 2c5r by Molmil
The structure of phage phi29 replication organizer protein p16.7 in complex with double stranded DNA
Descriptor: 5'-D(*CP*CP*GP*GP*TP*GP*GP*AP)-3', 5'-D(*TP*CP*CP*AP*CP*CP*GP*GP)-3', EARLY PROTEIN P16.7
Authors:Albert, A, Jimenez, M, Munoz-Espin, D, Asensio, J.L, Hermoso, J.A, Salas, M, Meijer, W.J.J.
Deposit date:2005-10-31
Release date:2005-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for Membrane Anchorage of Viral Phi 29 DNA During Replication.
J.Biol.Chem., 280, 2005
2BSA
DownloadVisualize
BU of 2bsa by Molmil
Ferredoxin-Nadp Reductase (Mutation: Y 303 S) complexed with NADP
Descriptor: FERREDOXIN-NADP REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Maya, C.M, Hermoso, J.A, Perez-Dorado, I, Tejero, J, Julvez, M.M, Gomez-Moreno, C, Medina, M.
Deposit date:2005-05-20
Release date:2005-10-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:C-Terminal Tyrosine of Ferredoxin-Nadp(+) Reductase in Hydride Transfer Processes with Nad(P)(+)/H.
Biochemistry, 44, 2005
2VNI
DownloadVisualize
BU of 2vni by Molmil
X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH 2P-AMP AT 2.37 ANGSTROMS RESOLUTION
Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, NADPH:FERREDOXIN REDUCTASE, ...
Authors:Perez-Dorado, I, Hermoso, J.A.
Deposit date:2008-02-05
Release date:2008-11-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Coenzyme Binding and Hydride Transfer in Rhodobacter Capsulatus Ferredoxin/Flavodoxin Nadp(H) Oxidoreductase.
Biochim.Biophys.Acta, 1794, 2009
2VNH
DownloadVisualize
BU of 2vnh by Molmil
X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH NADP. FORM II AT 2.27 ANGSTROMS RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH:FERREDOXIN REDUCTASE, ...
Authors:Perez-Dorado, I, Hermoso, J.A.
Deposit date:2008-02-05
Release date:2008-11-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Coenzyme Binding and Hydride Transfer in Rhodobacter Capsulatus Ferredoxin/Flavodoxin Nadp(H) Oxidoreductase.
Biochim.Biophys.Acta, 1794, 2009
2BNK
DownloadVisualize
BU of 2bnk by Molmil
The structure of phage phi29 replication organizer protein p16.7
Descriptor: EARLY PROTEIN GP16.7
Authors:Albert, A, Asensio, J.L, Munoz-Espin, D, Gonzalez, C, Hermoso, J.A, Villar, L, Jimenez-Barbero, J, Salas, M, Meijer, W.J.J.
Deposit date:2005-03-28
Release date:2005-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Functional Domain of {Varphi}29 Replication Organizer: Insights Into Oligomerization and DNA Binding.
J.Biol.Chem., 280, 2005
2BMW
DownloadVisualize
BU of 2bmw by Molmil
Ferredoxin: NADP+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro and Gly 265 Replaced by Pro (T155G-A160T-L263P-R264P-G265P)
Descriptor: FERREDOXIN--NADP REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Martinez-Julvez, M, Hermoso, J.A, Perez-Dorado, I, Medina, M, Tejero, J, Gomez-Moreno, C.
Deposit date:2005-03-16
Release date:2006-06-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Protein Motifs Involved in Coenzyme Interaction and Enzymatic Efficiency in Anabaena Ferredoxin-Nadp+ Reductase.
Biochemistry, 48, 2009
2WC1
DownloadVisualize
BU of 2wc1 by Molmil
Three-dimensional Structure of the Nitrogen Fixation Flavodoxin (NifF) from Rhodobacter capsulatus at 2.2 A
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:Perez-Dorado, I, Bittel, C, Hermoso, J.A, Cortez, N, Carrillo, N.
Deposit date:2009-03-06
Release date:2010-04-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural and Phylogenetic Analysis of Rhodobacter Capsulatus Niff: Uncovering General Features of Nitrogen-Fixation (Nif)-Flavodoxins.
Int.J.Mol.Sci., 14, 2013
2VNK
DownloadVisualize
BU of 2vnk by Molmil
X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH NADP. FORM III AT 1.93 ANGSTROMS RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH:FERREDOXIN REDUCTASE
Authors:Perez-Dorado, I, Hermoso, J.A.
Deposit date:2008-02-05
Release date:2008-11-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Coenzyme Binding and Hydride Transfer in Rhodobacter Capsulatus Ferredoxin/Flavodoxin Nadp(H) Oxidoreductase.
Biochim.Biophys.Acta, 1794, 2009
2VNJ
DownloadVisualize
BU of 2vnj by Molmil
X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH NADP. FORM I AT 2.13 ANGSTROMS RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH:FERREDOXIN REDUCTASE, ...
Authors:Perez-Dorado, I, Hermoso, J.A.
Deposit date:2008-02-05
Release date:2008-11-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Coenzyme Binding and Hydride Transfer in Rhodobacter Capsulatus Ferredoxin/Flavodoxin Nadp(H) Oxidoreductase.
Biochim.Biophys.Acta, 1794, 2009
7PL3
DownloadVisualize
BU of 7pl3 by Molmil
Crystal structure of catalytic domain in closed conformation of LytB from Streptococcus pneumoniae
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ...
Authors:Martinez Caballero, S, Hermoso, J.A.
Deposit date:2021-08-28
Release date:2022-09-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular basis of the final step of cell division in Streptococcus pneumoniae.
Cell Rep, 42, 2023
5G5K
DownloadVisualize
BU of 5g5k by Molmil
Crystal structure of NagZ from Pseudomonas aeruginosa in complex with the inhibitor 2-acetamido-1,2-dideoxynojirimycin
Descriptor: 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN, BETA-HEXOSAMINIDASE
Authors:Acebron, I, Artola-Recolons, C, Mahasenan, K, Mobashery, S, Hermoso, J.A.
Deposit date:2016-05-25
Release date:2017-05-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Catalytic Cycle of the N-Acetylglucosaminidase NagZ from Pseudomonas aeruginosa.
J. Am. Chem. Soc., 139, 2017
1QM4
DownloadVisualize
BU of 1qm4 by Molmil
Methionine Adenosyltransferase Complexed with a L-Methionine Analogue
Descriptor: L-2-AMINO-4-METHOXY-CIS-BUT-3-ENOIC ACID, MAGNESIUM ION, METHIONINE ADENOSYLTRANSFERASE, ...
Authors:Gonzalez, B, Pajares, M.A, Hermoso, J.A, Sanz-Aparicio, J.
Deposit date:1999-09-20
Release date:2000-09-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:The Crystal Structure of Tetrameric Methionine Adenosyltransferase from Rat Liver Reveals the Methionine-Binding Site
J.Mol.Biol., 300, 2000
7QRL
DownloadVisualize
BU of 7qrl by Molmil
LytM domain of DipM, a coordinator of a complex net of autolysins in Caulobacter crescentus
Descriptor: DipM
Authors:Batuecas, M.T, Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2022-01-11
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:LytM domain of DipM, a coordinator of a complex net of autolysins in Caulobacter crescentus
Nat Commun, 2023
7QVD
DownloadVisualize
BU of 7qvd by Molmil
X-ray structure of the lytic transglycosylase SltB2 from Pseudomonas aeruginosa
Descriptor: CALCIUM ION, Lytic murein transglycosylase
Authors:Batuecas, M.T, Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2022-01-21
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray structure of SltB2 from Pseudomonas aeruginosa
To Be Published

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon