Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 260 件

2WW5
DownloadVisualize
BU of 2ww5 by Molmil
3D-structure of the modular autolysin LytC from Streptococcus pneumoniae at 1.6 A resolution
分子名称: 1,4-BETA-N-ACETYLMURAMIDASE, CHLORIDE ION, CHOLINE ION, ...
著者Perez-Dorado, I, Sanles, R, Hermoso, J.A, Gonzalez, A, Garcia, A, Garcia, P, Garcia, J.L, Menendez, M.
登録日2009-10-21
公開日2010-04-21
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Insights Into Pneumococcal Fratricide from the Crystal Structures of the Modular Killing Factor Lytc.
Nat.Struct.Mol.Biol., 17, 2010
2WWC
DownloadVisualize
BU of 2wwc by Molmil
3D-structure of the modular autolysin LytC from Streptococcus pneumoniae in complex with synthetic peptidoglycan ligand
分子名称: 1,4-BETA-N-ACETYLMURAMIDASE, CHOLINE ION, GLYCEROL
著者Perez-Dorado, I, Sanles, R, Hermoso, J.A, Gonzalez, A, Garcia, A, Garcia, P, Garcia, J.L.
登録日2009-10-22
公開日2010-04-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Insights Into Pneumococcal Fratricide from the Crystal Structures of the Modular Killing Factor Lytc.
Nat.Struct.Mol.Biol., 17, 2010
3ZLB
DownloadVisualize
BU of 3zlb by Molmil
Crystal structure of phosphoglycerate kinase from Streptococcus pneumoniae
分子名称: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Bernardo-Garcia, N, Hermoso, J.A.
登録日2013-01-30
公開日2014-02-12
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Pneumococcal phosphoglycerate kinase interacts with plasminogen and its tissue activator.
Thromb. Haemost., 111, 2014
7AJZ
DownloadVisualize
BU of 7ajz by Molmil
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide)
分子名称: 1,2-ETHANEDIOL, L,D-transpeptidase YcbB, NAG-NAM(tetrapeptide), ...
著者Batuecas, M.T, Hermoso, J.A.
登録日2020-09-29
公開日2021-10-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide)
To Be Published
7AJO
DownloadVisualize
BU of 7ajo by Molmil
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate
分子名称: (2~{S},6~{S})-2-azanyl-6-[[(4~{R})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]heptanedioic acid, 1,2-ETHANEDIOL, L,D-transpeptidase YcbB
著者Batuecas, M.T, Hermoso, J.A.
登録日2020-09-29
公開日2021-10-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate
To Be Published
7AJX
DownloadVisualize
BU of 7ajx by Molmil
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with meropenem
分子名称: (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, 1,2-ETHANEDIOL, L,D-transpeptidase YcbB
著者Batuecas, M.T, Hermoso, J.A.
登録日2020-09-29
公開日2021-10-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with meropenem
To Be Published
7AJ9
DownloadVisualize
BU of 7aj9 by Molmil
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae
分子名称: 1,2-ETHANEDIOL, L,D-transpeptidase YcbB
著者Batuecas, M.T, Hermoso, J.A.
登録日2020-09-28
公開日2021-10-06
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae
To Be Published
4CDH
DownloadVisualize
BU of 4cdh by Molmil
Crystallographic structure of the Human Igg1 alpha 2-6 sialilated Fc-Fragment
分子名称: IG GAMMA-1 CHAIN C REGION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Silva-Martin, N, Bartual, S.G, Hermoso, J.A.
登録日2013-10-31
公開日2014-11-12
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1
Structure, 22, 2014
3ZHG
DownloadVisualize
BU of 3zhg by Molmil
Crystallographic structure of the native mouse SIGN-R1 CRD domain
分子名称: CALCIUM ION, CD209 ANTIGEN-LIKE PROTEIN B, SULFATE ION
著者Silva-Martin, N, Bartual, S.G, Hermoso, J.A.
登録日2012-12-21
公開日2014-01-15
最終更新日2020-03-11
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1.
Structure, 22, 2014
2X8M
DownloadVisualize
BU of 2x8m by Molmil
Crystal Structure of CbpF in complex with ipratropium by soaking
分子名称: CHOLINE ION, CHOLINE-BINDING PROTEIN F, GLYCEROL, ...
著者Silva-Martin, N, Hermoso, J.A.
登録日2010-03-10
公開日2011-04-06
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structures of Cbpf Complexed with Atropine and Ipratropium Reveal Clues for the Design of Novel Antimicrobials Against Streptococcus Pneumoniae.
Biochim.Biophys.Acta, 1840, 2013
2W22
DownloadVisualize
BU of 2w22 by Molmil
Activation Mechanism of Bacterial Thermoalkalophilic Lipases
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL-BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOX Y}-ETHOXY)-ETHANOL, CALCIUM ION, ...
著者Carrasco-Lopez, C, Godoy, C, De Las Rivas, B, Fernandez-Lorente, G, Palomo, J.M, Guisan, J.M, Fernandez-Lafuente, R, Hermoso, J.A.
登録日2008-10-23
公開日2008-12-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Activation of bacterial thermoalkalophilic lipases is spurred by dramatic structural rearrangements.
J. Biol. Chem., 284, 2009
2X8P
DownloadVisualize
BU of 2x8p by Molmil
Crystal Structure of CbpF in Complex with Atropine by Co- Crystallization
分子名称: (1R,5S)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL (2R)-3-HYDROXY-2-PHENYLPROPANOATE, CHOLINE ION, CHOLINE-BINDING PROTEIN F, ...
著者Silva-Martin, N, Hermoso, J.A.
登録日2010-03-10
公開日2011-04-06
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Crystal Structures of Cbpf Complexed with Atropine and Ipratropium Reveal Clues for the Design of Novel Antimicrobials Against Streptococcus Pneumoniae.
Biochim.Biophys.Acta, 1840, 2013
4BJ4
DownloadVisualize
BU of 4bj4 by Molmil
Structure of Pseudomonas aeruginosa amidase Ampdh2
分子名称: AMPDH2, CITRATE ANION
著者Martinez-Caballero, C.S, Carrasco-Lopez, C, Artola-Recolons, C, Hermoso, J.A.
登録日2013-04-16
公開日2013-07-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.722 Å)
主引用文献Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
4CFP
DownloadVisualize
BU of 4cfp by Molmil
Crystal structure of MltC in complex with tetrasaccharide at 2.15 A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside, CITRIC ACID, HEXAETHYLENE GLYCOL, ...
著者Bernardo-Garcia, N, Artola-Recolons, C, Hermoso, J.A.
登録日2013-11-19
公開日2014-07-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure and Cell Wall Cleavage by Modular Lytic Transglycosylase Mltc of Escherichia Coli.
Acs Chem.Biol., 9, 2014
4C5F
DownloadVisualize
BU of 4c5f by Molmil
Structure of Lytic Transglycosylase MltC from Escherichia coli at 2.3 A resolution.
分子名称: MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE C
著者Artola-Recolons, C, Bernardo-Garcia, N, Mobashery, S, Hermoso, J.A.
登録日2013-09-11
公開日2014-07-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Structure and Cell Wall Cleavage by Modular Lytic Transglycosylase Mltc of Escherichia Coli.
Acs Chem.Biol., 9, 2014
4C9F
DownloadVisualize
BU of 4c9f by Molmil
Structure of SIGN-R1 in complex with Sulfodextran
分子名称: 4-O-sulfo-alpha-D-glucopyranose, CALCIUM ION, CD209 ANTIGEN-LIKE PROTEIN B, ...
著者Silva-Martin, N, Bartual, S.G, Rodriguez, A, Ramirez, E, Chacon, P, Anthony, R.M, Park, C.G, Hermoso, J.A.
登録日2013-10-02
公開日2014-10-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1
Structure, 22, 2014
4BOL
DownloadVisualize
BU of 4bol by Molmil
Crystal structure of AmpDh2 from Pseudomonas aeruginosa in complex with pentapeptide
分子名称: AMPDH2, D-alanyl-N-[(2S,6R)-6-amino-6-carboxy-1-{[(1R)-1-carboxyethyl]amino}-1-oxohexan-2-yl]-D-glutamine, ZINC ION
著者Artola-Recolons, C, Martinez-Caballero, S, Lee, M, Carrasco-Lopez, C, Hesek, D, Spink, E.E, Lastochkin, E, Zhang, W, Hellman, L.M, Boggess, B, Mobashery, S, Hermoso, J.A.
登録日2013-05-21
公開日2013-07-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
4BF5
DownloadVisualize
BU of 4bf5 by Molmil
Structure of broad spectrum racemase from Aeromonas hydrophila
分子名称: ALANINE RACEMASE, CHLORIDE ION, GLYCEROL, ...
著者Carrasco-Lopez, C, Hermoso, J.A.
登録日2013-03-15
公開日2014-01-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural Basis for the Broad Specificity of a New Family of Amino-Acid Racemases.
Acta Crystallogr.,Sect.D, 70, 2014
4BHY
DownloadVisualize
BU of 4bhy by Molmil
Structure of alanine racemase from Aeromonas hydrophila
分子名称: ALANINE RACEMASE
著者Otero, L.H, Carrasco-Lopez, C, Bernardo-Garcia, N, Hermoso, J.A.
登録日2013-04-09
公開日2014-01-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structural Basis for the Broad Specificity of a New Family of Amino-Acid Racemases.
Acta Crystallogr.,Sect.D, 70, 2014
4CVD
DownloadVisualize
BU of 4cvd by Molmil
Crystal structure of the central repeat of cell wall binding module of Cpl7
分子名称: LYSOZYME
著者Silva-Martin, N, Uson, I, Rodriguez, D.D, Hermoso, J.A.
登録日2014-03-25
公開日2015-04-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.666 Å)
主引用文献Deciphering how Cpl-7 cell wall-binding repeats recognize the bacterial peptidoglycan.
Sci Rep, 7, 2017
2Y2B
DownloadVisualize
BU of 2y2b by Molmil
crystal structure of AmpD in complex with reaction products
分子名称: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD, 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID, ...
著者Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
登録日2010-12-14
公開日2011-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
2X8O
DownloadVisualize
BU of 2x8o by Molmil
Crystal Structure of CbpF in complex with Atropine by soaking
分子名称: (1R,5S)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL (2R)-3-HYDROXY-2-PHENYLPROPANOATE, CHOLINE ION, CHOLINE-BINDING PROTEIN F, ...
著者Silva-Martin, N, Hermoso, J.A.
登録日2010-03-10
公開日2011-04-06
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Crystal Structure of Cbpf in Complex with Atropine by Soaking
To be Published
2VZL
DownloadVisualize
BU of 2vzl by Molmil
FERREDOXIN-NADP REDUCTASE (MUTATIONS: T155G, A160T, L263P AND Y303S) COMPLEXED WITH NAD BY COCRYSTALLIZATION
分子名称: FERREDOXIN-NADP REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Herguedas, B, Martinez-Julvez, M, Hermoso, J.A, Peregrina, J.R, Medina, M.
登録日2008-07-28
公開日2009-04-21
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Protein Motifs Involved in Coenzyme Interaction and Enzymatic Efficiency in Anabaena Ferredoxin-Nadp+ Reductase.
Biochemistry, 48, 2009
2V5V
DownloadVisualize
BU of 2v5v by Molmil
W57E Flavodoxin from Anabaena
分子名称: FLAVIN MONONUCLEOTIDE, FLAVODOXIN, MAGNESIUM ION
著者Herguedas, B, Martinez-Julvez, M, Perez-Dorado, I, Goni, G, Medina, M, Hermoso, J.A.
登録日2007-07-10
公開日2007-10-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Tuning of the Fmn Binding and Oxido-Reduction Properties by Neighboring Side Chains in Anabaena Flavodoxin.
Arch.Biochem.Biophys., 467, 2007
2X0K
DownloadVisualize
BU of 2x0k by Molmil
Crystal structure of modular FAD synthetase from Corynebacterium ammoniagenes
分子名称: PYROPHOSPHATE, RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF, SULFATE ION
著者Herguedas, B, Hermoso, J.A, Martinez-Julvez, M, Medina, M, Frago, S.
登録日2009-12-15
公開日2010-05-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Oligomeric State in the Crystal Structure of Modular Fad Synthetase Provides Insights Into its Sequential Catalysis in Prokaryotes
J.Mol.Biol., 400, 2010

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon