Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 126 件
7SGW
DownloadVisualize
BU of 7sgw by Molmil
Papain-Like Protease of SARS CoV-2 in complex with PLP_Snyder630 inhibitor
分子名称: CHLORIDE ION, N-(naphthalen-1-yl)pyridine-3-carboxamide, Non-structural protein 3, ...
著者Osipiuk, J, Tesar, C, Endres, M, Lisnyak, V, Maki, S, Taylor, C, Zhang, Y, Zhou, Z, Azizi, S.A, Jones, K, Kathayat, R, Snyder, S.A, Dickinson, B.C, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2021-10-07
公開日2021-10-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Papain-Like Protease of SARS CoV-2 in complex with PLP_Snyder630 inhibitor
To Be Published
6WUA
DownloadVisualize
BU of 6wua by Molmil
30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S13, ...
著者Jogl, G, Khayat, R.
登録日2020-05-04
公開日2020-11-04
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
6WUB
DownloadVisualize
BU of 6wub by Molmil
30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement
分子名称: 16S rRNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
著者Jogl, G, Khayat, R.
登録日2020-05-04
公開日2020-11-04
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
3QPR
DownloadVisualize
BU of 3qpr by Molmil
HK97 Prohead I encapsidating inactive virally encoded protease
分子名称: Major capsid protein
著者Huang, R.K, Khayat, R, Lee, K.K, Gertsman, I, Duda, R.L, Hendrix, R.W, Johnson, J.E.
登録日2011-02-14
公開日2011-03-30
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (5.2 Å)
主引用文献The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.
J.Mol.Biol., 408, 2011
6PXC
DownloadVisualize
BU of 6pxc by Molmil
N-Terminal SH2 domain of the p120RasGAP bound to a p190RhoGAP phosphotyrosine peptide
分子名称: Ras GTPase-activating protein 1, phosphopeptide of p190RhoGAP
著者Jaber Chehayeb, R, Stiegler, A.L, Boggon, T.J.
登録日2019-07-25
公開日2019-12-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of p120RasGAP N-terminal SH2 domain in its apo form and in complex with a p190RhoGAP phosphotyrosine peptide.
Plos One, 14, 2019
7JW3
DownloadVisualize
BU of 7jw3 by Molmil
Crystal structure of Aedes aegypti Nibbler NTD domain
分子名称: Exonuclease mut-7 homolog
著者Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
登録日2020-08-24
公開日2021-01-20
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7JW2
DownloadVisualize
BU of 7jw2 by Molmil
Crystal structure of Aedes aegypti Nibbler EXO domain
分子名称: Exonuclease mut-7 homolog
著者Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
登録日2020-08-24
公開日2021-01-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PXB
DownloadVisualize
BU of 6pxb by Molmil
N-Terminal SH2 domain of the p120RasGAP
分子名称: Ras GTPase-activating protein 1
著者Jaber Chehayeb, R, Stiegler, A.L, Boggon, T.J.
登録日2019-07-25
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.747 Å)
主引用文献Crystal structures of p120RasGAP N-terminal SH2 domain in its apo form and in complex with a p190RhoGAP phosphotyrosine peptide.
Plos One, 14, 2019
7JW6
DownloadVisualize
BU of 7jw6 by Molmil
Crystal structure of Drosophila Nibbler EXO domain
分子名称: Exonuclease mut-7 homolog
著者Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
登録日2020-08-24
公開日2021-01-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
1WPX
DownloadVisualize
BU of 1wpx by Molmil
Crystal structure of carboxypeptidase Y inhibitor complexed with the cognate proteinase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Carboxypeptidase Y, Carboxypeptidase Y inhibitor, ...
著者Mima, J, Hayashida, M, Fujii, T, Narita, Y, Hayashi, R, Ueda, M, Hata, Y.
登録日2004-09-14
公開日2005-03-01
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the carboxypeptidase y inhibitor i(c) in complex with the cognate proteinase reveals a novel mode of the proteinase-protein inhibitor interaction
J.Mol.Biol., 346, 2005
1A6L
DownloadVisualize
BU of 1a6l by Molmil
T14C MUTANT OF AZOTOBACTER VINELANDII FDI
分子名称: FE3-S4 CLUSTER, FERREDOXIN, IRON/SULFUR CLUSTER
著者Gao-Sheridan, H.S, Kemper, M.A, Khayat, R, Armstrong, F.A, Prasad, G.S, Sridhar, V, Stout, C.D, Burgess, B.K.
登録日1998-02-26
公開日1998-05-27
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A T14C variant of Azotobacter vinelandii ferredoxin I undergoes facile [3Fe-4S]0 to [4Fe-4S]2+ conversion in vitro but not in vivo.
J.Biol.Chem., 273, 1998
6WAY
DownloadVisualize
BU of 6way by Molmil
C-terminal SH2 domain of p120RasGAP in complex with p190RhoGAP phosphotyrosine peptide
分子名称: Ras GTPase-activating protein 1, Rho GTPase-activating protein 35
著者Jaber Chehayeb, R, Wang, J, Stiegler, A.L, Boggon, T.J.
登録日2020-03-26
公開日2020-06-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The GTPase-activating protein p120RasGAP has an evolutionarily conserved "FLVR-unique" SH2 domain.
J.Biol.Chem., 295, 2020
6WAX
DownloadVisualize
BU of 6wax by Molmil
C-terminal SH2 domain of p120RasGAP
分子名称: 1,2-ETHANEDIOL, Ras GTPase-activating protein 1, SULFATE ION
著者Jaber Chehayeb, R, Wang, J, Stiegler, A.L, Boggon, T.J.
登録日2020-03-26
公開日2020-06-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The GTPase-activating protein p120RasGAP has an evolutionarily conserved "FLVR-unique" SH2 domain.
J.Biol.Chem., 295, 2020
1JQ6
DownloadVisualize
BU of 1jq6 by Molmil
HUMAN CYTOMEGALOVIRUS PROTEASE DIMER-INTERFACE MUTANT, S225Y
分子名称: ASSEMBLIN
著者Batra, R, Khayat, R, Tong, L.
登録日2001-08-03
公開日2001-09-12
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular mechanism for dimerization to regulate the catalytic activity of human cytomegalovirus protease.
Nat.Struct.Biol., 8, 2001
1JQ7
DownloadVisualize
BU of 1jq7 by Molmil
HCMV protease dimer-interface mutant, S225Y complexed to Inhibitor BILC 408
分子名称: ASSEMBLIN, N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
著者Batra, R, Khayat, R, Tong, L.
登録日2001-08-03
公開日2001-09-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular mechanism for dimerization to regulate the catalytic activity of human cytomegalovirus protease.
Nat.Struct.Biol., 8, 2001
1X9X
DownloadVisualize
BU of 1x9x by Molmil
Solution Structure of Dimeric SAM Domain from MAPKKK Ste11
分子名称: Serine/threonine-protein kinase STE11
著者Bhattacharjya, S, Xu, P, Gingras, R, Shaykhutdinov, R, Wu, C, Whiteway, M, Ni, F.
登録日2004-08-24
公開日2005-08-30
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the dimeric SAM domain of MAPKKK Ste11 and its interactions with the adaptor protein Ste50 from the budding yeast: implications for Ste11 activation and signal transmission through the Ste50-Ste11 complex.
J.Mol.Biol., 344, 2004
2GI4
DownloadVisualize
BU of 2gi4 by Molmil
Solution Structure of the Low Molecular Weight Protein Tyrosine Phosphatase from Campylobacter jejuni.
分子名称: possible phosphotyrosine protein phosphatase
著者Tolkatchev, D, Shaykhutdinov, R, Xu, P, Ni, F.
登録日2006-03-28
公開日2006-04-18
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Three-dimensional structure and ligand interactions of the low molecular weight protein tyrosine phosphatase from Campylobacter jejuni.
Protein Sci., 15, 2006
1EID
DownloadVisualize
BU of 1eid by Molmil
CRYSTAL STRUCTURE OF F120G MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A
分子名称: RIBONUCLEASE A
著者Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2000-02-25
公開日2002-02-13
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.
Protein Sci., 11, 2002
1EIC
DownloadVisualize
BU of 1eic by Molmil
CRYSTAL STRUCTURE OF F120A MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A
分子名称: RIBONUCLEASE A
著者Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2000-02-25
公開日2002-02-13
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.
Protein Sci., 11, 2002
1FS3
DownloadVisualize
BU of 1fs3 by Molmil
CRYSTAL STRUCTURE OF WILD-TYPE BOVINE PANCREATIC RIBONUCLEASE A
分子名称: Ribonuclease A
著者Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2000-09-08
公開日2002-02-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.
Protein Sci., 11, 2002
1EIE
DownloadVisualize
BU of 1eie by Molmil
CRYSTAL STRUCTURE OF F120W MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A
分子名称: RIBONUCLEASE A
著者Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2000-02-25
公開日2002-02-13
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.
Protein Sci., 11, 2002
3OQ5
DownloadVisualize
BU of 3oq5 by Molmil
Crystal structure of the 3-MBT domain from human L3MBTL1 in complex with p53K382me1
分子名称: Cellular tumor antigen p53, Lethal(3)malignant brain tumor-like protein
著者Roy, S, West, L.E, Weiner, K.L, Hayashi, R, Shi, X, Appella, E, Gozani, O, Kutateladze, T.
登録日2010-09-02
公開日2010-09-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5005 Å)
主引用文献The MBT Repeats of L3MBTL1 Link SET8-mediated p53 Methylation at Lysine 382 to Target Gene Repression.
J.Biol.Chem., 285, 2010
1IZQ
DownloadVisualize
BU of 1izq by Molmil
F46V mutant of bovine pancreatic ribonuclease A
分子名称: RIBONUCLEASE A
著者Kadonosono, T, Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2002-10-11
公開日2003-11-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A
Biochemistry, 42, 2003
1IZR
DownloadVisualize
BU of 1izr by Molmil
F46A mutant of bovine pancreatic ribonuclease A
分子名称: RIBONUCLEASE A
著者Kadonosono, T, Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2002-10-11
公開日2003-11-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A
Biochemistry, 42, 2003
1IZP
DownloadVisualize
BU of 1izp by Molmil
F46L mutant of bovine pancreatic ribonuclease A
分子名称: RIBONUCLEASE A
著者Kadonosono, T, Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2002-10-11
公開日2003-11-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A
Biochemistry, 42, 2003

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon