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PDB: 125 results

2XEU
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Ring domain
Descriptor: RING FINGER PROTEIN 4, SULFATE ION, ZINC ION, ...
Authors:Plechanovova, A, McMahon, S.A, Johnson, K.A, Navratilova, I, Naismith, J.H, Hay, R.T.
Deposit date:2010-05-18
Release date:2010-07-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanism of Ubiquitylation by Dimeric Ring Ligase Rnf4
Nat.Struct.Mol.Biol., 18, 2011
2XPH
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BU of 2xph by Molmil
Crystal structure of human SENP1 with the bound cobalt
Descriptor: COBALT (II) ION, GLYCEROL, SENTRIN-SPECIFIC PROTEASE 1
Authors:Rimsa, V, Eadsforth, T, Hay, R.T, Hunter, W.N.
Deposit date:2010-08-26
Release date:2010-09-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Role of Co2+ in the Crystallization of Human Senp1 and Comments on the Limitations of Automated Refinement Protocols
Acta Crystallogr.,Sect.F, 67, 2011
2XRE
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Detection of cobalt in previously unassigned human SENP1 structure
Descriptor: COBALT (II) ION, GLYCEROL, SENTRIN-SPECIFIC PROTEASE 1
Authors:Rimsa, V, Eadsforth, T, Hay, R.T, Hunter, W.N.
Deposit date:2010-09-14
Release date:2010-10-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The Role of Co2+ in the Crystallization of Human Senp1 and Comments on the Limitations of Automated Refinement Protocols
Acta Crystallogr.,Sect.F, 67, 2011
2CKH
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SENP1-SUMO2 complex
Descriptor: SENTRIN-SPECIFIC PROTEASE 1, SMALL UBIQUITIN-RELATED MODIFIER 2
Authors:Shen, L.N, Dong, C, Liu, H, Hay, R.T, Naismith, J.H.
Deposit date:2006-04-18
Release date:2006-04-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Structure of Senp1-Sumo-2 Complex Suggests a Structural Basis for Discrimination between Sumo Paralogues During Processing.
Biochem.J., 397, 2006
7KIB
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PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 4
Descriptor: (2R,3R,3aS,6S,6aR)-6-[(2-amino-3-bromoquinolin-7-yl)oxy]-2-(4-amino-7H-pyrrolo[2,3-d]pyrimidin-7-yl)hexahydro-3aH-cyclopenta[b]furan-3,3a-diol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Palte, R.L, Hayes, R.P.
Deposit date:2020-10-23
Release date:2021-04-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:The Discovery of Two Novel Classes of 5,5-Bicyclic Nucleoside-Derived PRMT5 Inhibitors for the Treatment of Cancer.
J.Med.Chem., 64, 2021
5U0A
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BU of 5u0a by Molmil
CRISPR RNA-guided surveillance complex
Descriptor: CRISPR-associated protein, Cas5e family, Cse1 family, ...
Authors:Xiao, Y, Luo, M, Hayes, R.P, Kim, J, Ng, S, Ding, F, Liao, M, Ke, A.
Deposit date:2016-11-23
Release date:2017-08-09
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System.
Cell, 170, 2017
5U07
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BU of 5u07 by Molmil
CRISPR RNA-guided surveillance complex
Descriptor: CRISPR-associated protein, Cas5e family, Cse1 family, ...
Authors:Xiao, Y, Luo, M, Hayes, R.P, Kim, J, Ng, S, Ding, F, Liao, M, Ke, A.
Deposit date:2016-11-23
Release date:2017-08-09
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System.
Cell, 170, 2017
4G0L
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Glutathionyl-hydroquinone Reductase, YqjG, of E.coli complexed with GSH
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLUTATHIONE, SULFATE ION, ...
Authors:Green, A.R, Hayes, R.P, Xun, L, Kang, C.
Deposit date:2012-07-09
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural understanding of the glutathione-dependent reduction mechanism of glutathionyl-hydroquinone reductases.
J.Biol.Chem., 287, 2012
4G0K
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Glutathionyl-hydroquinone reductase, YqjG, of E.coli complexed with GS-menadione
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, L-gamma-glutamyl-S-(3-methyl-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-L-cysteinylglycine, SULFATE ION, ...
Authors:Green, A.R, Hayes, R.P, Xun, L, Kang, C.
Deposit date:2012-07-09
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.557 Å)
Cite:Structural understanding of the glutathione-dependent reduction mechanism of glutathionyl-hydroquinone reductases.
J.Biol.Chem., 287, 2012
4G0I
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Glutathionyl-Hydroquinone Reductase, YqjG of Escherichia coli
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, protein yqjG
Authors:Green, A.R, Hayes, R.P, Xun, L, Kang, C.
Deposit date:2012-07-09
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural understanding of the glutathione-dependent reduction mechanism of glutathionyl-hydroquinone reductases.
J.Biol.Chem., 287, 2012
4FQU
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Glutathionyl-Hydroquinone Reductase PcpF of Sphingobium chlorophenolicum
Descriptor: Putative glutathione transferase
Authors:Green, A.R, Hayes, R.P, Xun, L, Kang, C.
Deposit date:2012-06-25
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural understanding of the glutathione-dependent reduction mechanism of glutathionyl-hydroquinone reductases.
J.Biol.Chem., 287, 2012
4KEC
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SbHCT-complex form
Descriptor: (3R,4S,5R)-3,4-dihydroxy-5-{[(2E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxy}cyclohex-1-ene-1-carboxylic acid, COENZYME A, Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase
Authors:Walker, A.M, Hayes, R.P, Youn, B, Vermerris, W, Sattler, S.E, Kang, C.
Deposit date:2013-04-25
Release date:2013-05-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.
Plant Physiol., 162, 2013
4KE4
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BU of 4ke4 by Molmil
Elucidation of the structure and reaction mechanism of Sorghum bicolor hydroxycinnamoyltransferase and its structural relationship to other CoA-dependent transferases and synthases
Descriptor: GLYCEROL, Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase, TETRAETHYLENE GLYCOL
Authors:Walker, A.M, Hayes, R.P, Youn, B, Vermerris, W, Sattler, S.E, Kang, C.
Deposit date:2013-04-25
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.012 Å)
Cite:Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.
Plant Physiol., 162, 2013
1JQ7
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BU of 1jq7 by Molmil
HCMV protease dimer-interface mutant, S225Y complexed to Inhibitor BILC 408
Descriptor: ASSEMBLIN, N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
Authors:Batra, R, Khayat, R, Tong, L.
Deposit date:2001-08-03
Release date:2001-09-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular mechanism for dimerization to regulate the catalytic activity of human cytomegalovirus protease.
Nat.Struct.Biol., 8, 2001
1JQ6
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BU of 1jq6 by Molmil
HUMAN CYTOMEGALOVIRUS PROTEASE DIMER-INTERFACE MUTANT, S225Y
Descriptor: ASSEMBLIN
Authors:Batra, R, Khayat, R, Tong, L.
Deposit date:2001-08-03
Release date:2001-09-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular mechanism for dimerization to regulate the catalytic activity of human cytomegalovirus protease.
Nat.Struct.Biol., 8, 2001
6W6P
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BU of 6w6p by Molmil
MultiBody Refinement of 70S Ribosome from Enterococcus faecalis
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Jogl, G, Khayat, R.
Deposit date:2020-03-17
Release date:2020-10-14
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
6WAX
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BU of 6wax by Molmil
C-terminal SH2 domain of p120RasGAP
Descriptor: 1,2-ETHANEDIOL, Ras GTPase-activating protein 1, SULFATE ION
Authors:Jaber Chehayeb, R, Wang, J, Stiegler, A.L, Boggon, T.J.
Deposit date:2020-03-26
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The GTPase-activating protein p120RasGAP has an evolutionarily conserved "FLVR-unique" SH2 domain.
J.Biol.Chem., 295, 2020
1WPX
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BU of 1wpx by Molmil
Crystal structure of carboxypeptidase Y inhibitor complexed with the cognate proteinase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Carboxypeptidase Y, Carboxypeptidase Y inhibitor, ...
Authors:Mima, J, Hayashida, M, Fujii, T, Narita, Y, Hayashi, R, Ueda, M, Hata, Y.
Deposit date:2004-09-14
Release date:2005-03-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the carboxypeptidase y inhibitor i(c) in complex with the cognate proteinase reveals a novel mode of the proteinase-protein inhibitor interaction
J.Mol.Biol., 346, 2005
2OF9
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BU of 2of9 by Molmil
Crystal structure of apo AVR4 (D39A/C122S)
Descriptor: Avidin-related protein 4/5, FORMIC ACID
Authors:Livnah, O, Hayouka, R, Eisenberg-Domovich, Y.
Deposit date:2007-01-03
Release date:2007-12-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Critical importance of loop conformation to avidin-enhanced hydrolysis of an active biotin ester.
Acta Crystallogr.,Sect.D, 64, 2008
6JKQ
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Crystal structure of aspartate transcarbamoylase from Trypanosoma cruzi (Ligand-free form)
Descriptor: Aspartate carbamoyltransferase
Authors:Matoba, K, Shiba, T, Nara, T, Aoki, T, Nagasaki, S, Hayamizu, R, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Balogun, E.O, Inaoka, D.K, Kita, K, Harada, S.
Deposit date:2019-03-01
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystallographic snapshots of Trypanosoma cruzi aspartate transcarbamoylase revealed an ordered Bi-Bi reaction mechanism
To Be Published
6JL6
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BU of 6jl6 by Molmil
Crystal structure of aspartate transcarbamoylase from Trypanosoma cruzi in complex with phosphate (Pi).
Descriptor: ASPARTIC ACID, Aspartate carbamoyltransferase, PHOSPHATE ION
Authors:Matoba, K, Shiba, T, Nara, T, Aoki, T, Nagasaki, S, Hayamizu, R, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Balogun, E.O, Inaoka, D.K, Kita, K, Harada, S.
Deposit date:2019-03-04
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic snapshots of Trypanosoma cruzi aspartate transcarbamoylase revealed an ordered Bi-Bi reaction mechanism
To Be Published
6JKR
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Crystal structure of aspartate transcarbamoylase from Trypanosoma cruzi in complex with carbamoyl phosphate (CP)
Descriptor: Aspartate carbamoyltransferase, GLYCEROL, PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
Authors:Matoba, K, Shiba, T, Nara, T, Aoki, T, Nagasaki, S, Hayamizu, R, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Balogun, E.O, Inaoka, D.K, Kita, K, Harada, S.
Deposit date:2019-03-01
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic snapshots of Trypanosoma cruzi aspartate transcarbamoylase revealed an ordered Bi-Bi reaction mechanism
To Be Published
6JL4
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BU of 6jl4 by Molmil
Crystal structure of aspartate transcarbamoylase from Trypanosoma cruzi in complex with carbamoyl aspartate (CA) and phosphate (Pi)
Descriptor: ASPARTIC ACID, Aspartate carbamoyltransferase, N-CARBAMOYL-L-ASPARTATE, ...
Authors:Matoba, K, Shiba, T, Nara, T, Aoki, T, Nagasaki, S, Hayamizu, R, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Balogun, E.O, Inaoka, D.K, Kita, K, Harada, S.
Deposit date:2019-03-04
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic snapshots of Trypanosoma cruzi aspartate transcarbamoylase revealed an ordered Bi-Bi reaction mechanism
To Be Published
6JKS
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BU of 6jks by Molmil
Crystal structure of aspartate transcarbamoylase from Trypanosoma cruzi in complex with carbamoyl phosphate (CP) and aspartate (Asp)
Descriptor: ASPARTIC ACID, Aspartate carbamoyltransferase, putative, ...
Authors:Matoba, K, Shiba, T, Nara, T, Aoki, T, Nagasaki, S, Hayamizu, R, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Balogun, E.O, Inaoka, D.K, Kita, K, Harada, S.
Deposit date:2019-03-01
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic snapshots of Trypanosoma cruzi aspartate transcarbamoylase revealed an ordered Bi-Bi reaction mechanism
To Be Published
6JL5
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BU of 6jl5 by Molmil
Crystal structure of aspartate transcarbamoylase from Trypanosoma cruzi in complex with aspartate (Asp) and phosphate (Pi).
Descriptor: ASPARTIC ACID, Aspartate carbamoyltransferase, GLYCEROL, ...
Authors:Matoba, K, Shiba, T, Nara, T, Aoki, T, Nagasaki, S, Hayamizu, R, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Balogun, E.O, Inaoka, D.K, Kita, K, Harada, S.
Deposit date:2019-03-04
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystallographic snapshots of Trypanosoma cruzi aspartate transcarbamoylase revealed an ordered Bi-Bi reaction mechanism
To Be Published

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