Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 122 件
2AHG
DownloadVisualize
BU of 2ahg by Molmil
Unsaturated glucuronyl hydrolase mutant D88N with dGlcA-GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, unsaturated glucuronyl hydrolase
著者Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-07-28
公開日2006-08-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM
J.Biol.Chem., 281, 2006
2AHF
DownloadVisualize
BU of 2ahf by Molmil
Unsaturated glucuronyl hydrolase mutant D88N
分子名称: unsaturated glucuronyl hydrolase
著者Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-07-28
公開日2006-08-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM
J.Biol.Chem., 281, 2006
2CWS
DownloadVisualize
BU of 2cws by Molmil
Crystal structure at 1.0 A of alginate lyase A1-II', a member of polysaccharide lyase family-7
分子名称: GLYCEROL, SULFATE ION, alginate lyase A1-II'
著者Yamasaki, M, Ogura, K, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-06-25
公開日2005-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献A Structural Basis for Depolymerization of Alginate by Polysaccharide Lyase Family-7
J.Mol.Biol., 352, 2005
2D5J
DownloadVisualize
BU of 2d5j by Molmil
Unsaturated Glucuronyl Hydrolase Triggers Hydration of Vinyl Ether Group but not of Glycosidic Bond
分子名称: unsaturated glucuronyl hydrolase
著者Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-11-02
公開日2006-08-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM
J.Biol.Chem., 281, 2006
2E22
DownloadVisualize
BU of 2e22 by Molmil
Crystal structure of xanthan lyase in complex with mannose
分子名称: Xanthan lyase, alpha-D-mannopyranose
著者Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2006-11-07
公開日2007-01-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan
Biochemistry, 46, 2007
2E24
DownloadVisualize
BU of 2e24 by Molmil
crystal structure of a mutant (R612A) of xanthan lyase
分子名称: DI(HYDROXYETHYL)ETHER, Xanthan lyase
著者Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2006-11-07
公開日2007-01-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan
Biochemistry, 46, 2007
2D8L
DownloadVisualize
BU of 2d8l by Molmil
Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, Putative glycosyl hydrolase yteR
著者Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
登録日2005-12-06
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide
J.Mol.Biol., 360, 2006
7VEW
DownloadVisualize
BU of 7vew by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with unsaturated trigalacturonic acid
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
著者Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
登録日2021-09-10
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VET
DownloadVisualize
BU of 7vet by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a closed conformation
分子名称: SPH1118
著者Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
登録日2021-09-10
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VEV
DownloadVisualize
BU of 7vev by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with MES
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, SPH1118
著者Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
登録日2021-09-10
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.498 Å)
主引用文献Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VER
DownloadVisualize
BU of 7ver by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a full open conformation
分子名称: GLYCEROL, SPH1118
著者Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
登録日2021-09-10
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.699 Å)
主引用文献Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VEU
DownloadVisualize
BU of 7veu by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with galacturonic acid
分子名称: GLYCEROL, SPH1118, alpha-D-galactopyranuronic acid
著者Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
登録日2021-09-10
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.736 Å)
主引用文献Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
3VLW
DownloadVisualize
BU of 3vlw by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide
分子名称: AlgQ1, CALCIUM ION, GLYCEROL, ...
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VWO
DownloadVisualize
BU of 3vwo by Molmil
Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Peptidoglycan hydrolase FlgJ
著者Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-08-30
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
To be Published
3VLU
DownloadVisualize
BU of 3vlu by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate
分子名称: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VLV
DownloadVisualize
BU of 3vlv by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VXD
DownloadVisualize
BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889, SULFATE ION
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-09-11
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
3WUX
DownloadVisualize
BU of 3wux by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
分子名称: 1,2-ETHANEDIOL, Unsaturated chondroitin disaccharide hydrolase
著者Nakamichi, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-08
公開日2014-05-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
to be published
3WSC
DownloadVisualize
BU of 3wsc by Molmil
Crystal structure of alginate-binding protein Algp7
分子名称: Alginate-binding protein
著者Temtrirath, K, Murata, K, Hashimoto, W.
登録日2014-03-07
公開日2015-02-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.992 Å)
主引用文献Structural insights into alginate binding by bacterial cell-surface protein
Carbohydr.Res., 404C, 2014
3WL3
DownloadVisualize
BU of 3wl3 by Molmil
N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii
分子名称: GLYCEROL, PHOSPHATE ION, Putative uncharacterized protein PH0499, ...
著者Nakamura, T, Niiyama, M, Hashimoto, W, Uegaki, K.
登録日2013-11-07
公開日2014-05-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
3WIW
DownloadVisualize
BU of 3wiw by Molmil
Crystal structure of unsaturated glucuronyl hydrolase specific for heparin
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycosyl hydrolase family 88
著者Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-26
公開日2014-01-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin.
J.Biol.Chem., 289, 2014
3WL4
DownloadVisualize
BU of 3wl4 by Molmil
N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus
分子名称: CADMIUM ION, CALCIUM ION, CHLORIDE ION, ...
著者Nakamura, T, Niiyama, M, Hashimoto, W, Uegaki, K.
登録日2013-11-07
公開日2014-05-07
最終更新日2014-08-20
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon