6JBN
 
 | | Crystal structure of Sphingomonas sp. A1 peroxidase EfeB responsible for import of iron | | 分子名称: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, OXYGEN MOLECULE, ... | | 著者 | Okumura, K, Takase, R, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2019-01-26 | | 公開日 | 2020-01-29 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
|
|
6JHX
 | |
7E4S
 | | Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with HEPES | | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-dehydro-4-deoxy-D-glucuronate isomerase, ZINC ION | | 著者 | Yamamoto, Y, Takase, R, Mikami, B, Hashimoto, W. | | 登録日 | 2021-02-15 | | 公開日 | 2022-02-23 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.79 Å) | | 主引用文献 | Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs
J.Appl.Glyosci., 2023
|
|
1VAV
 | | Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution | | 分子名称: | Alginate lyase PA1167 | | 著者 | Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B. | | 登録日 | 2004-02-19 | | 公開日 | 2004-05-25 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold.
J.Biol.Chem., 279, 2004
|
|
1VD5
 | | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ... | | 著者 | Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2004-03-18 | | 公開日 | 2004-07-13 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
J.Biol.Chem., 279, 2004
|
|
4TQU
 | | Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgM1, AlgM2, ... | | 著者 | Maruyama, Y, Itoh, T, Kaneko, A, Nishitani, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2014-06-12 | | 公開日 | 2015-07-22 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (3.204 Å) | | 主引用文献 | Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate
Structure, 23, 2015
|
|
1KWH
 | | Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1. | | 分子名称: | CALCIUM ION, Macromolecule-Binding Periplasmic Protein | | 著者 | Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K. | | 登録日 | 2002-01-29 | | 公開日 | 2002-02-13 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution.
J.Mol.Biol., 316, 2002
|
|
4TKZ
 | | Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae | | 分子名称: | GLYCEROL, Putative uncharacterized protein gbs1890 | | 著者 | Nakamichi, Y, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2014-05-28 | | 公開日 | 2014-08-20 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
To Be Published
|
|
4TKM
 | | Crystal structure of NADH-dependent reductase A1-R' complexed with NAD | | 分子名称: | NADH-dependent reductase for 4-deoxy-L-erythro-5-hexoseulose uronate, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION | | 著者 | Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W. | | 登録日 | 2014-05-27 | | 公開日 | 2014-06-25 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.67 Å) | | 主引用文献 | Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
|
|
4TKL
 | | Crystal structure of NADH-dependent reductase A1-R' responsible for alginate metabolism | | 分子名称: | NADH-dependent reductase for 4-deoxy-L-erythro-5-hexoseulose uronate, PHOSPHATE ION | | 著者 | Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W. | | 登録日 | 2014-05-27 | | 公開日 | 2014-06-25 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
|
|
4TQV
 | | Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate | | 分子名称: | AlgM1, AlgM2, AlgS | | 著者 | Maruyama, Y, Itoh, T, Kaneko, A, Nishitani, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2014-06-12 | | 公開日 | 2015-07-22 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (4.504 Å) | | 主引用文献 | Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate
Structure, 23, 2015
|
|
2ZAB
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) | | 分子名称: | Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-10-02 | | 公開日 | 2008-05-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
|
|
2ZAC
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) | | 分子名称: | Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-10-02 | | 公開日 | 2008-05-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
|
|
1X1J
 | | Crystal Structure of Xanthan Lyase (N194A) with a Substrate. | | 分子名称: | (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase | | 著者 | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2005-04-04 | | 公開日 | 2005-07-19 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
|
|
2Z8R
 | | Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein | | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-09-10 | | 公開日 | 2007-10-16 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER
J.Biol.Chem., 282, 2007
|
|
2ZAA
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG) | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL | | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-10-02 | | 公開日 | 2008-05-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
|
|
2Z8S
 | | Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid | | 分子名称: | CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid | | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-09-10 | | 公開日 | 2007-10-16 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER
J.Biol.Chem., 282, 2007
|
|
2ZYC
 | | Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 | | 分子名称: | PHOSPHATE ION, Peptidoglycan hydrolase FlgJ | | 著者 | Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2009-01-19 | | 公開日 | 2009-02-03 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | | 主引用文献 | Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ
Biochem.Biophys.Res.Commun., 381, 2009
|
|
1X1H
 | |
3A0N
 | | Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus | | 分子名称: | VAL-1, beta-D-glucopyranuronic acid | | 著者 | Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2009-03-23 | | 公開日 | 2009-10-20 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | | 主引用文献 | Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
|
|
1X1I
 | | Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product | | 分子名称: | (4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID, xanthan lyase | | 著者 | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2005-04-04 | | 公開日 | 2005-07-19 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
|
|
3A09
 | |
3AFL
 | | Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase | | 著者 | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-03-09 | | 公開日 | 2010-04-28 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | | 主引用文献 | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
|
|
3ANK
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S | | 分子名称: | 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
|
|
2ZUX
 | | Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2008-10-28 | | 公開日 | 2009-02-03 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
|
|
