6INZ
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![BU of 6inz by Molmil](/molmil-images/mine/6inz) | Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide | 分子名称: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular solute-binding protein family 1, ... | 著者 | Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | 登録日 | 2018-10-29 | 公開日 | 2019-09-11 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.289 Å) | 主引用文献 | Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host. Biosci.Biotechnol.Biochem., 83, 2019
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6JHX
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7WGU
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![BU of 7wgu by Molmil](/molmil-images/mine/7wgu) | Crystal structure of metal-binding protein EfeO from Escherichia coli | 分子名称: | 1,2-ETHANEDIOL, ACETATE ION, Iron uptake system protein EfeO, ... | 著者 | Nakatsuji, S, Takase, R, Mikami, B, Hashimoto, W. | 登録日 | 2021-12-29 | 公開日 | 2022-12-14 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Crystal structures of EfeB and EfeO in a bacterial siderophore-independent iron transport system Biochem.Biophys.Res.Commun., 594, 2022
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1J1N
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![BU of 1j1n by Molmil](/molmil-images/mine/1j1n) | Structure Analysis of AlgQ2, A Macromolecule(Alginate)-Binding Periplasmic Protein Of Sphingomonas Sp. A1., Complexed with an Alginate Tetrasaccharide | 分子名称: | AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | 著者 | Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K. | 登録日 | 2002-12-11 | 公開日 | 2003-06-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution J.BIOL.CHEM., 278, 2003
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5XS8
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![BU of 5xs8 by Molmil](/molmil-images/mine/5xs8) | Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc | 分子名称: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1 | 著者 | Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W. | 登録日 | 2017-06-12 | 公開日 | 2018-01-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.952 Å) | 主引用文献 | Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans. Sci Rep, 7, 2017
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4TKZ
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![BU of 4tkz by Molmil](/molmil-images/mine/4tkz) | Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae | 分子名称: | GLYCEROL, Putative uncharacterized protein gbs1890 | 著者 | Nakamichi, Y, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | 登録日 | 2014-05-28 | 公開日 | 2014-08-20 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae To Be Published
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2Z8R
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![BU of 2z8r by Molmil](/molmil-images/mine/2z8r) | Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-09-10 | 公開日 | 2007-10-16 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
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7VEQ
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![BU of 7veq by Molmil](/molmil-images/mine/7veq) | Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in an open conformation | 分子名称: | GLYCEROL, SPH1118 | 著者 | Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W. | 登録日 | 2021-09-10 | 公開日 | 2022-08-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.696 Å) | 主引用文献 | Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation. Sci Rep, 12, 2022
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7VGK
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![BU of 7vgk by Molmil](/molmil-images/mine/7vgk) | Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI | 分子名称: | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase | 著者 | Iwase, H, Oiki, S, Mikami, B, Takase, R, Hashimoto, W. | 登録日 | 2021-09-16 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs J.Appl.Glyosci., 2023
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1VAV
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![BU of 1vav by Molmil](/molmil-images/mine/1vav) | Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution | 分子名称: | Alginate lyase PA1167 | 著者 | Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B. | 登録日 | 2004-02-19 | 公開日 | 2004-05-25 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold. J.Biol.Chem., 279, 2004
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1VD5
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![BU of 1vd5 by Molmil](/molmil-images/mine/1vd5) | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ... | 著者 | Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-03-18 | 公開日 | 2004-07-13 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution J.Biol.Chem., 279, 2004
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1X1J
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![BU of 1x1j by Molmil](/molmil-images/mine/1x1j) | Crystal Structure of Xanthan Lyase (N194A) with a Substrate. | 分子名称: | (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase | 著者 | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2005-04-04 | 公開日 | 2005-07-19 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol., 350, 2005
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2Z8S
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![BU of 2z8s by Molmil](/molmil-images/mine/2z8s) | Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid | 分子名称: | CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-09-10 | 公開日 | 2007-10-16 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
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1X1H
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1X1I
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![BU of 1x1i by Molmil](/molmil-images/mine/1x1i) | Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product | 分子名称: | (4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID, xanthan lyase | 著者 | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2005-04-04 | 公開日 | 2005-07-19 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol., 350, 2005
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2ZUX
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![BU of 2zux by Molmil](/molmil-images/mine/2zux) | Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2008-10-28 | 公開日 | 2009-02-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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1Y3I
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![BU of 1y3i by Molmil](/molmil-images/mine/1y3i) | Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex | 分子名称: | GLYCEROL, Inorganic polyphosphate/ATP-NAD kinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | 著者 | Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, Kawai, S, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-11-25 | 公開日 | 2005-01-18 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex Biochem.Biophys.Res.Commun., 327, 2005
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1Y3Q
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![BU of 1y3q by Molmil](/molmil-images/mine/1y3q) | Structure of AlgQ1, alginate-binding protein | 分子名称: | AlgQ1, CALCIUM ION | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-11-26 | 公開日 | 2005-04-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
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1Y3P
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![BU of 1y3p by Molmil](/molmil-images/mine/1y3p) | Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide | 分子名称: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-11-26 | 公開日 | 2005-04-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
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5Z6B
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![BU of 5z6b by Molmil](/molmil-images/mine/5z6b) | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO | 著者 | Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | 登録日 | 2018-01-22 | 公開日 | 2019-01-23 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.582 Å) | 主引用文献 | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide To Be Published
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1Y3N
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![BU of 1y3n by Molmil](/molmil-images/mine/1y3n) | Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide | 分子名称: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-11-26 | 公開日 | 2005-04-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
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1KWH
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![BU of 1kwh by Molmil](/molmil-images/mine/1kwh) | Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1. | 分子名称: | CALCIUM ION, Macromolecule-Binding Periplasmic Protein | 著者 | Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K. | 登録日 | 2002-01-29 | 公開日 | 2002-02-13 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution. J.Mol.Biol., 316, 2002
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1Y3H
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![BU of 1y3h by Molmil](/molmil-images/mine/1y3h) | Crystal Structure of Inorganic Polyphosphate/ATP-NAD kinase from Mycobacterium tuberculosis | 分子名称: | Inorganic polyphosphate/ATP-NAD kinase | 著者 | Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, kawai, S, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-11-24 | 公開日 | 2005-01-18 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex BIOCHEM.BIOPHYS.RES.COMMUN., 327, 2005
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5Z6C
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5Y4C
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![BU of 5y4c by Molmil](/molmil-images/mine/5y4c) | Crystal structure of EfeO-like protein Algp7 in complex with a metal ion | 分子名称: | Alginate-binding protein, COPPER (II) ION, GLYCEROL | 著者 | Temtrirath, K, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | 登録日 | 2017-08-03 | 公開日 | 2017-10-04 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.701 Å) | 主引用文献 | Binding mode of metal ions to the bacterial iron import protein EfeO Biochem. Biophys. Res. Commun., 493, 2017
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