5Z6C
 
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5Z6B
 | | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide | | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO | | Authors: | Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | | Deposit date: | 2018-01-22 | | Release date: | 2019-01-23 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.582 Å) | | Cite: | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
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6JHX
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2ZAB
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) | | Descriptor: | Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-10-02 | | Release date: | 2008-05-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.66 Å) | | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
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2ZAC
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) | | Descriptor: | Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-10-02 | | Release date: | 2008-05-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
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2ZYC
 | | Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 | | Descriptor: | PHOSPHATE ION, Peptidoglycan hydrolase FlgJ | | Authors: | Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2009-01-19 | | Release date: | 2009-02-03 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.74 Å) | | Cite: | Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ
Biochem.Biophys.Res.Commun., 381, 2009
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3A0N
 | | Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus | | Descriptor: | VAL-1, beta-D-glucopyranuronic acid | | Authors: | Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2009-03-23 | | Release date: | 2009-10-20 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.45 Å) | | Cite: | Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
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3A09
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2ZA9
 | | Crystal Structure of Alginate lyase A1-II' N141C/N199C | | Descriptor: | Alginate lyase, SULFATE ION | | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-10-02 | | Release date: | 2008-05-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
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3ANI
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae | | Descriptor: | Putative uncharacterized protein gbs1889 | | Authors: | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-09-02 | | Release date: | 2010-10-06 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AT7
 | | Crystal structure of bacterial cell-surface alginate-binding protein Algp7 | | Descriptor: | Alginate-binding flagellin | | Authors: | Maruyama, Y, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-12-27 | | Release date: | 2011-02-23 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif.
Biochem.Biophys.Res.Commun., 405, 2011
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2Z42
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 | | Descriptor: | Alginate lyase, SULFATE ION | | Authors: | Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K. | | Deposit date: | 2007-06-12 | | Release date: | 2008-05-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
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3AFM
 | | Crystal structure of aldose reductase A1-R responsible for alginate metabolism | | Descriptor: | Carbonyl reductase | | Authors: | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-03-10 | | Release date: | 2010-08-11 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
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2ZBL
 | | Functional annotation of Salmonella enterica yihS-encoded protein | | Descriptor: | Putative isomerase, beta-D-mannopyranose | | Authors: | Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-10-24 | | Release date: | 2008-02-05 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase
J.Mol.Biol., 377, 2008
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2ZAA
 | | Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG) | | Descriptor: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL | | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-10-02 | | Release date: | 2008-05-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
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3ANK
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S | | Descriptor: | 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889 | | Authors: | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-09-02 | | Release date: | 2010-10-06 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.02 Å) | | Cite: | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AMI
 | | The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1 | | Descriptor: | zinc peptidase | | Authors: | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-08-20 | | Release date: | 2011-02-02 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011
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3ANJ
 | | Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae | | Descriptor: | Putative uncharacterized protein gbs1889 | | Authors: | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-09-02 | | Release date: | 2010-10-06 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AFL
 | | Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide | | Descriptor: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase | | Authors: | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-03-09 | | Release date: | 2010-04-28 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.99 Å) | | Cite: | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
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2ZUY
 | | Crystal structure of exotype rhamnogalacturonan lyase YesX | | Descriptor: | CALCIUM ION, YesX protein | | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2008-10-28 | | Release date: | 2009-02-03 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
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3AY2
 | | Crystal structure of Neisserial azurin | | Descriptor: | GLYCEROL, Lipid modified azurin protein, SULFATE ION, ... | | Authors: | Ochiai, A, Hashimoto, W, Yamada, T, Chakrabarty, A.M, Murata, K. | | Deposit date: | 2011-04-24 | | Release date: | 2012-05-02 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structure of Neisserial Azurin
To be Published
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3A0O
 | | Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 | | Descriptor: | CHLORIDE ION, Oligo alginate lyase | | Authors: | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2009-03-23 | | Release date: | 2010-03-31 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.11 Å) | | Cite: | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
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3AFN
 | | Crystal structure of aldose reductase A1-R complexed with NADP | | Descriptor: | Carbonyl reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TERTIARY-BUTYL ALCOHOL | | Authors: | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-03-10 | | Release date: | 2010-08-11 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.63 Å) | | Cite: | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
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3AMJ
 | | The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1 | | Descriptor: | ZINC ION, zinc peptidase active subunit, zinc peptidase inactive subunit | | Authors: | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-08-20 | | Release date: | 2011-02-09 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011
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5Y4C
 | | Crystal structure of EfeO-like protein Algp7 in complex with a metal ion | | Descriptor: | Alginate-binding protein, COPPER (II) ION, GLYCEROL | | Authors: | Temtrirath, K, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | | Deposit date: | 2017-08-03 | | Release date: | 2017-10-04 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.701 Å) | | Cite: | Binding mode of metal ions to the bacterial iron import protein EfeO
Biochem. Biophys. Res. Commun., 493, 2017
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