Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 119 results

3M7N
DownloadVisualize
BU of 3m7n by Molmil
archaeoglobus fulgidus exosome with RNA bound to the active site
Descriptor: 5'-R(*C*UP*CP*CP*CP*C)-3', Probable exosome complex exonuclease 1, Probable exosome complex exonuclease 2, ...
Authors:Hartung, S, Hopfner, K.-P.
Deposit date:2010-03-16
Release date:2010-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Quantitative analysis of processive RNA degradation by the archaeal RNA exosome
Nucleic Acids Res., 38, 2010
7RYJ
DownloadVisualize
BU of 7ryj by Molmil
Cryo EM analysis reveals inherent flexibility of authentic murine papillomavirus capsids
Descriptor: Major capsid protein L1
Authors:Hartmann, S.R, Hafenstein, S.
Deposit date:2021-08-25
Release date:2021-11-10
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo EM Analysis Reveals Inherent Flexibility of Authentic Murine Papillomavirus Capsids.
Viruses, 13, 2021
6N9L
DownloadVisualize
BU of 6n9l by Molmil
Crystal structure of T. maritima UvrA d117-399 with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, UvrABC system protein A, ZINC ION
Authors:Hartley, S, Case, B, Osuga, M, Hingorani, M.M, Jeruzalmi, D.
Deposit date:2018-12-03
Release date:2019-05-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair.
Nucleic Acids Res., 47, 2019
7KZF
DownloadVisualize
BU of 7kzf by Molmil
High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility
Descriptor: Major capsid protein L1
Authors:Hartmann, S.R, Goetschius, D.J, Hafenstein, S.
Deposit date:2020-12-10
Release date:2021-02-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility.
Sci Rep, 11, 2021
6PER
DownloadVisualize
BU of 6per by Molmil
Crystal Structure of Ligand-Free iSeroSnFR
Descriptor: 1,2-ETHANEDIOL, iSeroSnFR, a soluble, ...
Authors:Hartanto, S, Tian, L, Fisher, A.J.
Deposit date:2019-06-20
Release date:2020-06-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.
Cell, 183, 2020
7UTV
DownloadVisualize
BU of 7utv by Molmil
CPV Total-Fab Polyclonal B Site Fab (2 of 2)
Descriptor: Capsid protein VP1, Heavy chain antibody fragment, Light chain antibody fragment
Authors:Hartmann, S.R, Hafenstein, S.L, Charnesky, A.J.
Deposit date:2022-04-27
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus.
Commun Biol, 6, 2023
7UTP
DownloadVisualize
BU of 7utp by Molmil
CPV Affinity Purified Polyclonal Fab A Site Fab
Descriptor: Capsid protein VP1, Heavy chain antibody fragment, Light chain antibody fragment
Authors:Hartmann, S.R, Hafenstein, S.L, Charnesky, A.J.
Deposit date:2022-04-27
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus.
Commun Biol, 6, 2023
7UTR
DownloadVisualize
BU of 7utr by Molmil
CPV Affinity Purified Polyclonal Fab B Site Fab
Descriptor: Capsid protein VP1, Heavy chain antibody fragment, Light chain antibody fragment
Authors:Hartmann, S.R, Hafenstein, S.L, Charnesky, A.J.
Deposit date:2022-04-27
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus.
Commun Biol, 6, 2023
7UTS
DownloadVisualize
BU of 7uts by Molmil
CPV Total-Fab Polyclonal A Site Fab
Descriptor: Capsid protein VP1, Heavy chain antibody fragment, Light chain antibody fragment
Authors:Hartmann, S.R, Hafenstein, S.L, Charnesky, A.J.
Deposit date:2022-04-27
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus.
Commun Biol, 6, 2023
7UTU
DownloadVisualize
BU of 7utu by Molmil
CPV Total-Fab Polyclonal B Site Fab (1 of 2)
Descriptor: Capsid protein 2, Heavy chain antibody fragment, Light chain antibody fragment
Authors:Hartmann, S.R, Hafenstein, S.L, Charnesky, A.J.
Deposit date:2022-04-27
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus.
Commun Biol, 6, 2023
4QMA
DownloadVisualize
BU of 4qma by Molmil
Crystal Structure of a Putative Cysteine Dioxygnase From Ralstonia eutropha: An Alternative Modeling of 2GM6 from JCSG Target 361076
Descriptor: 1,2-ETHANEDIOL, Cysteine dioxygenase type I, FE (III) ION, ...
Authors:Hartman, S.H, Driggers, C.M, Karplus, P.A, Joint Center for Structural Genomics (JCSG)
Deposit date:2014-06-15
Release date:2014-11-26
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs.
Protein Sci., 24, 2015
4QM8
DownloadVisualize
BU of 4qm8 by Molmil
Crystal Structure of a Putative Cysteine Dioxygnase From Bacillus subtilis: A Alternative Modeling of 3EQE
Descriptor: CYSTEINE, Cysteine dioxygenase, FE (III) ION
Authors:Hartman, S.H, Driggers, C.M, Karplus, P.A.
Deposit date:2014-06-15
Release date:2014-11-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs.
Protein Sci., 24, 2015
4QM9
DownloadVisualize
BU of 4qm9 by Molmil
Crystal Structure of a Putative Cysteine Dioxygenase From Bacillus subtilis with Cys-bound
Descriptor: CYSTEINE, Cysteine dioxygenase, FE (III) ION
Authors:Hartman, S.H, Driggers, C.M, Karplus, P.A.
Deposit date:2014-06-15
Release date:2014-11-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs.
Protein Sci., 24, 2015
3BNK
DownloadVisualize
BU of 3bnk by Molmil
X-ray crystal structure of Flavoredoxin from Methanosarcina acetivorans
Descriptor: FLAVIN MONONUCLEOTIDE, Flavoredoxin
Authors:Suharti, S, Murakami, K.S, Ferry, J.G.
Deposit date:2007-12-14
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans
Biochemistry, 47, 2008
3M85
DownloadVisualize
BU of 3m85 by Molmil
Archaeoglobus fulgidus exosome y70a with RNA bound to the active site
Descriptor: 5'-R(*CP*UP*CP*CP*CP*C)-3', Probable exosome complex exonuclease 1, Probable exosome complex exonuclease 2, ...
Authors:Hartung, S, Hopfner, K.-P.
Deposit date:2010-03-17
Release date:2010-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Quantitative analysis of processive RNA degradation by the archaeal RNA exosome
Nucleic Acids Res., 38, 2010
7AJN
DownloadVisualize
BU of 7ajn by Molmil
Crystal Structure of the first bromodomain of BRD4 in complex with a BzD ligand
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N}-(1-adamantylmethyl)-2-[(7~{R},9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,10,12-tetraen-9-yl]ethanamide
Authors:Picaud, S, Hassel-Hart, S, Tobias, K, Spencer, J, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Filippakopoulos, P.
Deposit date:2020-09-29
Release date:2020-12-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal Structure of the first bromodomain of BRD4 in complex with a BzD ligand
To Be Published
9FFH
DownloadVisualize
BU of 9ffh by Molmil
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Descriptor: Major capsid protein
Authors:Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A.
Deposit date:2024-05-23
Release date:2024-06-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography.
Biorxiv, 2024
9FFG
DownloadVisualize
BU of 9ffg by Molmil
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Descriptor: Major capsid protein
Authors:Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Byrom, L, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A.
Deposit date:2024-05-23
Release date:2024-06-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography.
Biorxiv, 2024
8BW4
DownloadVisualize
BU of 8bw4 by Molmil
PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
Descriptor: (2R)-4-(3-fluoranylthiophen-2-yl)carbonyl-N-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide, PH-interacting protein
Authors:Grosjean, H, Aimon, A, Hassell-Hart, S, Bradshaw, W.J, Krojer, T, Talon, R, Douangamath, A, Koekemoer, L, Biggin, P.C, Spencer, J, von Delft, F.
Deposit date:2022-12-06
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
To Be Published
8BW2
DownloadVisualize
BU of 8bw2 by Molmil
PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
Descriptor: (2R)-N-(2-methoxyethyl)-2-methyl-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide, PH-interacting protein
Authors:Grosjean, H, Aimon, A, Hassell-Hart, S, Bradshaw, W.J, Krojer, T, Talon, R, Douangamath, A, Koekemoer, L, Biggin, P.C, Spencer, J, von Delft, F.
Deposit date:2022-12-06
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
To Be Published
6SE4
DownloadVisualize
BU of 6se4 by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with (+)-JD1, an Organometallic BET Bromodomain Inhibitor
Descriptor: (+)-JD1, 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ...
Authors:Krojer, T, Hassell-Hart, S, Picaud, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Filippakopoulos, P, Spencer, J, von Delft, F, Structural Genomics Consortium (SGC)
Deposit date:2019-07-29
Release date:2019-08-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal Structure of the first bromodomain of human BRD4 in complex with (+)-JD1, an Organometallic BET Bromodomain Inhibitor
To Be Published
8BW3
DownloadVisualize
BU of 8bw3 by Molmil
PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
Descriptor: (2S)-N-(cyclopropylmethyl)-2-methyl-4-(1-methyl-1H-pyrrole-2-carbonyl)piperazine-1-carboxamide, PH-interacting protein
Authors:Grosjean, H, Aimon, A, Hassell-Hart, S, Bradshaw, W.J, Krojer, T, Talon, R, Douangamath, A, Koekemoer, L, Biggin, P.C, Spencer, J, von Delft, F.
Deposit date:2022-12-06
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
To Be Published
2CHO
DownloadVisualize
BU of 2cho by Molmil
Bacteroides thetaiotaomicron hexosaminidase with O-GlcNAcase activity
Descriptor: ACETATE ION, CALCIUM ION, GLUCOSAMINIDASE, ...
Authors:Dennis, R.J, Taylor, E.J, Macauley, M.S, Stubbs, K.A, Turkenburg, J.P, Hart, S.J, Black, G.N, Vocadlo, D.J, Davies, G.J.
Deposit date:2006-03-16
Release date:2006-06-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and Mechanism of a Bacterial B-Glucosaminidase Having O-Glcnacase Activity
Nat.Struct.Mol.Biol., 13, 2006
2CHN
DownloadVisualize
BU of 2chn by Molmil
Bacteroides thetaiotaomicron hexosaminidase with O-GlcNAcase activity- NAG-thiazoline complex
Descriptor: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, CALCIUM ION, GLUCOSAMINIDASE, ...
Authors:Dennis, R.J, Taylor, E.J, Macauley, M.S, Stubbs, K.A, Turkenburg, J.P, Hart, S.J, Black, G.N, Vocadlo, D.J, Davies, G.J.
Deposit date:2006-03-15
Release date:2006-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and Mechanism of a Bacterial B-Glucosaminidase Having O-Glcnacase Activity
Nat.Struct.Mol.Biol., 13, 2006
4A9W
DownloadVisualize
BU of 4a9w by Molmil
Flavin-containing monooxygenase from Stenotrophomonas maltophilia
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MONOOXYGENASE, SULFATE ION
Authors:Jensen, C.N, Cartwright, J, Hart, S, Turkenburg, J.P, Ali, S.T, Allen, M.J, Grogan, G.
Deposit date:2011-11-29
Release date:2012-04-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A Flavoprotein Monooxygenase that Catalyses a Baeyer-Villiger Reaction and Thioether Oxidation Using Nadh as the Nicotinamide Cofactor.
Chembiochem, 13, 2012

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon