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PDB: 116 results

3WR2
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RNase Po1 complexed with 3'GMP
Descriptor: GUANOSINE-3'-MONOPHOSPHATE, Guanyl-specific ribonuclease Po1
Authors:Hara, Y, Katsutani, T, Kobayashi, H, Suzuki, M.
Deposit date:2014-02-13
Release date:2015-02-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:RNase Po1 complexed with 3'GMP
to be published
6XEU
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BU of 6xeu by Molmil
CryoEM structure of GIRK2PIP2* - G protein-gated inwardly rectifying potassium channel GIRK2 with PIP2
Descriptor: G protein-activated inward rectifier potassium channel 2, POTASSIUM ION, SODIUM ION, ...
Authors:Mathiharan, Y.K, Glaaser, I.W, Skiniotis, G, Slesinger, P.A.
Deposit date:2020-06-13
Release date:2021-09-01
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into GIRK2 channel modulation by cholesterol and PIP2
Cell Rep, 36, 2021
6XEV
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BU of 6xev by Molmil
CryoEM structure of GIRK2-PIP2/CHS - G protein-gated inwardly rectifying potassium channel GIRK2 with modulators cholesteryl hemisuccinate and PIP2
Descriptor: CHOLESTEROL HEMISUCCINATE, G protein-activated inward rectifier potassium channel 2, POTASSIUM ION, ...
Authors:Mathiharan, Y.K, Glaaser, I.W, Skiniotis, G, Slesinger, P.A.
Deposit date:2020-06-14
Release date:2021-09-01
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural insights into GIRK2 channel modulation by cholesterol and PIP2
Cell Rep, 36, 2021
4RYU
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BU of 4ryu by Molmil
Crystal Structure of C2 form of E112A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'/3'-nucleotidase SurE, GLYCEROL, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2014-12-17
Release date:2015-09-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr. D Biol. Crystallogr., 71, 2015
4RYT
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BU of 4ryt by Molmil
Crystal Structure of F222 form of E112A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, 5'/3'-nucleotidase SurE, MAGNESIUM ION, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2014-12-17
Release date:2015-09-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr. D Biol. Crystallogr., 71, 2015
4XGB
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BU of 4xgb by Molmil
Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium co-crystallized with AMP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'/3'-nucleotidase SurE, MAGNESIUM ION, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2014-12-30
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
4XD7
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BU of 4xd7 by Molmil
Structure of thermophilic F1-ATPase inhibited by epsilon subunit
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP synthase epsilon chain, ATP synthase gamma chain, ...
Authors:SHIRAKIHARA, Y, SHIRATORI, A, TANIKAWA, H, NAKASAKO, M, YOSHIDA, M, SUZUKI, T.
Deposit date:2014-12-19
Release date:2015-08-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of a thermophilic F1 -ATPase inhibited by an epsilon-subunit: deeper insight into the epsilon-inhibition mechanism.
Febs J., 282, 2015
4XGP
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BU of 4xgp by Molmil
Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium co-crystallized and soaked with AMP.
Descriptor: 1,2-ETHANEDIOL, 5'/3'-nucleotidase SurE, ADENINE, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2015-01-01
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
4XEP
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BU of 4xep by Molmil
Crystal Structure of F222 form of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, 5'/3'-nucleotidase SurE, MAGNESIUM ION, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2014-12-24
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
4XJ7
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BU of 4xj7 by Molmil
Crystal Structure of E112A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium soaked with AMP
Descriptor: 5'/3'-nucleotidase SurE, ADENINE, ADENOSINE, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2015-01-08
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
4XER
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BU of 4xer by Molmil
Crystal Structure of C2 form of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'/3'-nucleotidase SurE, ACETATE ION, ...
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2014-12-24
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
4XH8
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BU of 4xh8 by Molmil
Crystal Structure of E112A/D230A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: 5'/3'-nucleotidase SurE
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2015-01-05
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
8X5U
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BU of 8x5u by Molmil
Crystal structure of Thermus thermophilus peptidyl-tRNA hydrolase C-terminal 16 amino acid deletion mutant
Descriptor: Peptidyl-tRNA hydrolase, SULFATE ION
Authors:Uehara, Y, Matsumoto, A, Nakazawa, T, Fukuta, A, Ando, K, Oka, N, Uchiumi, T, Ito, K.
Deposit date:2023-11-19
Release date:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Thermus thermophilus peptidyl-tRNA hydrolase C-terminal 16 amino acid deletion mutant
To Be Published
8X5T
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BU of 8x5t by Molmil
Crystal structure of Thermus thermophilus peptidyl-tRNA hydrolase in complex with adenosine 5'-monophosphate
Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Uehara, Y, Matsumoto, A, Nakazawa, T, Fukuta, A, Ando, K, Oka, N, Uchiumi, T, Ito, K.
Deposit date:2023-11-19
Release date:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Thermus thermophilus peptidyl-tRNA hydrolase in complex with adenosine 5'-monophosphate
To Be Published
1PFK
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BU of 1pfk by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF PHOSPHOFRUCTOKINASE FROM ESCHERICHIA COLI WITH ITS REACTION PRODUCTS
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shirakihara, Y, Evans, P.R.
Deposit date:1988-01-25
Release date:1989-01-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products.
J.Mol.Biol., 204, 1988
4G9O
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BU of 4g9o by Molmil
Crystal Structure of H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, 5'/3'-nucleotidase SurE, MAGNESIUM ION
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2012-07-24
Release date:2013-03-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Dramatic Structural Changes Resulting from the Loss of a Crucial Hydrogen Bond in the Hinge Region Involved in C-Terminal Helix Swapping in SurE: A Survival Protein from Salmonella typhimurium.
Plos One, 8, 2013
2RPB
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BU of 2rpb by Molmil
The solution structure of membrane protein
Descriptor: hypothetical membrane protein
Authors:Kuwahara, Y, Unzai, S, Nagata, T, Hiroaki, H.
Deposit date:2008-05-13
Release date:2009-05-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of membrane protein
To be Published
4GAD
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BU of 4gad by Molmil
Crystal Structure of D230A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
Descriptor: 5'/3'-nucleotidase SurE, GLYCEROL, MAGNESIUM ION
Authors:Mathiharan, Y.K, Murthy, M.R.N.
Deposit date:2012-07-25
Release date:2013-03-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Dramatic Structural Changes Resulting from the Loss of a Crucial Hydrogen Bond in the Hinge Region Involved in C-Terminal Helix Swapping in SurE: A Survival Protein from Salmonella typhimurium.
Plos One, 8, 2013
1SKY
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BU of 1sky by Molmil
CRYSTAL STRUCTURE OF THE NUCLEOTIDE FREE ALPHA3BETA3 SUB-COMPLEX OF F1-ATPASE FROM THE THERMOPHILIC BACILLUS PS3
Descriptor: F1-ATPASE, SULFATE ION
Authors:Shirakihara, Y, Leslie, A.G.W, Abrahams, J.P, Walker, J.E, Ueda, T, Sekimoto, Y, Kambara, M, Saika, K, Kagawa, Y, Yoshida, M.
Deposit date:1997-02-26
Release date:1998-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The crystal structure of the nucleotide-free alpha 3 beta 3 subcomplex of F1-ATPase from the thermophilic Bacillus PS3 is a symmetric trimer.
Structure, 5, 1997
2DQM
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BU of 2dqm by Molmil
Crystal Structure of Aminopeptidase N complexed with bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase N, SULFATE ION, ...
Authors:Onohara, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2006-05-29
Release date:2006-08-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
2EXD
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BU of 2exd by Molmil
The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii
Descriptor: nfeD short homolog
Authors:Kuwahara, Y, Ohno, A, Morii, T, Tochio, H, Shirakawa, M, Hiroaki, H.
Deposit date:2005-11-08
Release date:2006-12-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold.
Protein Sci., 17, 2008
3WMR
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BU of 3wmr by Molmil
Crystal structure of VinJ
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, GLYCEROL, Proline iminopeptidase
Authors:Shinohara, Y, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2013-11-22
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates
Febs Lett., 588, 2014
8XGV
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BU of 8xgv by Molmil
Optimization Efforts for Identification of Novel Highly Potent Keap1-Nrf2 Protein-Protein Interaction (PPI) Inhibitors
Descriptor: (2~{R},3~{S})-3-[[(2~{S})-2-[4-[(3-ethoxypyridin-2-yl)methyl]phenyl]-2-fluoranyl-ethanoyl]amino]-2-methyl-3-(4-methylphenyl)propanoic acid, ACETATE ION, Kelch-like ECH-associated protein 1, ...
Authors:Otake, K, Hara, Y, Ubukata, M, Inoue, M, Nagahashi, N, Motoda, D, Ogawa, N, Hantani, Y, Hantani, R, Adachi, T, Nomura, A, Yamaguchi, K, Maekawa, M, Mamada, H, Motomura, T, Sato, M, Harada, K.
Deposit date:2023-12-15
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Optimization Efforts for Identification of Novel Highly Potent Keap1-Nrf2 Protein-Protein Interaction Inhibitors.
J.Med.Chem., 67, 2024
8XGK
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BU of 8xgk by Molmil
Optimization Efforts for Identification of Novel Highly Potent Keap1-Nrf2 Protein-Protein Interaction Ihhibitors
Descriptor: (2~{R},3~{S})-3-[[(2~{S})-2-(4-chlorophenyl)-2-fluoranyl-ethanoyl]amino]-3-[3-(2-cyano-2-methyl-propoxy)-4-methyl-phenyl]-2-methyl-propanoic acid, ACETATE ION, Kelch-like ECH-associated protein 1, ...
Authors:Otake, K, Hara, Y, Ubukata, M, Inoue, M, Nagahashi, N, Motoda, D, Ogawa, N, Hantani, Y, Hantani, R, Adachi, T, Nomura, A, Yamaguchi, K, Maekawa, M, Mamada, H, Motomura, T, Sato, M, Harada, K.
Deposit date:2023-12-15
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Optimization Efforts for Identification of Novel Highly Potent Keap1-Nrf2 Protein-Protein Interaction Inhibitors.
J.Med.Chem., 67, 2024
3AXB
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BU of 3axb by Molmil
Structure of a dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon, Aeropyrum pernix
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, PROLINE, ...
Authors:Sakuraba, H, Ohshima, T, Satomura, T, Yoneda, K, Hara, Y.
Deposit date:2011-04-01
Release date:2012-04-04
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix
J.Biol.Chem., 287, 2012

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