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PDB: 231 件

8Y7F
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Crystal structure of CARF domain-truncated Csx1-Crn2 from Marinitoga sp.
分子名称: CRISPR-associated protein
著者Zhang, D, Yuan, C, Lin, Z.
登録日2024-02-04
公開日2024-07-17
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural insight into the Csx1-Crn2 fusion self-limiting ribonuclease of type III CRISPR system.
Nucleic Acids Res., 52, 2024
2MRO
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Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)
分子名称: DNA damage-inducible protein 1, Polyubiquitin-B
著者Zhang, D, Fushman, D.
登録日2014-07-14
公開日2015-02-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
8Y7G
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Crystal structure of the Marinitoga sp. Csx1-Crn2 H495A mutant in complex with cyclic-tetraadenylate (cA4)
分子名称: ACETATE ION, CRISPR-associated protein, RNA (5'-R(P*AP*A)-3'), ...
著者Zhang, D, Yuan, C, Lin, Z.
登録日2024-02-04
公開日2024-07-17
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural insight into the Csx1-Crn2 fusion self-limiting ribonuclease of type III CRISPR system.
Nucleic Acids Res., 52, 2024
8Y6Z
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Crystal structure of the Marinitoga sp. Csx1-Crn2 fusion ribonuclease of type III CRISPR
分子名称: CRISPR-associated protein
著者Zhang, D, Yuan, C.
登録日2024-02-03
公開日2024-07-17
最終更新日2024-08-21
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Structural insight into the Csx1-Crn2 fusion self-limiting ribonuclease of type III CRISPR system.
Nucleic Acids Res., 52, 2024
8Y75
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Crystal structure of the CARF-HTH domain of Csx1-Crn2 from Marinitoga sp.
分子名称: CRISPR-associated protein
著者Zhang, D, Yuan, C, Lin, Z.
登録日2024-02-03
公開日2024-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insight into the Csx1-Crn2 fusion self-limiting ribonuclease of type III CRISPR system.
Nucleic Acids Res., 52, 2024
2MR9
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NMR structure of UBA domain of DNA-damage-inducible 1 protein (Ddi1)
分子名称: DNA damage-inducible protein 1
著者Zhang, D, Fushman, D.
登録日2014-07-02
公開日2015-02-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
5KPM
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Glycogen Synthase Kinase 3 beta Complexed with BRD3731
分子名称: (4~{S})-3-(2,2-dimethylpropyl)-4,7,7-trimethyl-4-phenyl-2,6,8,9-tetrahydropyrazolo[3,4-b]quinolin-5-one, Glycogen synthase kinase-3 beta
著者Lakshminarasimhan, D, White, A, Nadupalli, A, Suto, R.K.
登録日2016-07-04
公開日2018-03-14
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Exploiting an Asp-Glu "switch" in glycogen synthase kinase 3 to design paralog-selective inhibitors for use in acute myeloid leukemia.
Sci Transl Med, 10, 2018
5KPL
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Glycogen Synthase Kinase 3 beta Complexed with BRD0705
分子名称: (4~{S})-4-ethyl-7,7-dimethyl-4-phenyl-2,6,8,9-tetrahydropyrazolo[3,4-b]quinolin-5-one, Glycogen synthase kinase-3 beta
著者Lakshminarasimhan, D, White, A, Nadupalli, A, Suto, R.K.
登録日2016-07-04
公開日2018-03-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Exploiting an Asp-Glu "switch" in glycogen synthase kinase 3 to design paralog-selective inhibitors for use in acute myeloid leukemia.
Sci Transl Med, 10, 2018
5V8E
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Structure of Bacillus cereus PatB1
分子名称: Bacillus cereus PatB1, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Sychantha, D, Little, D.J, Chapman, R.N, Boons, G.J, Robinson, H, Howell, P.L, Clarke, A.J.
登録日2017-03-21
公開日2017-10-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献PatB1 is an O-acetyltransferase that decorates secondary cell wall polysaccharides.
Nat. Chem. Biol., 14, 2018
5KPK
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Glycogen Synthase Kinase 3 beta Complexed with BRD0209
分子名称: (4~{S})-3-cyclopropyl-4,7,7-trimethyl-4-phenyl-2,6,8,9-tetrahydropyrazolo[3,4-b]quinolin-5-one, Glycogen synthase kinase-3 beta
著者Lakshminarasimhan, D, White, A, Nadupalli, A, Suto, R.K.
登録日2016-07-04
公開日2018-03-14
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Exploiting an Asp-Glu "switch" in glycogen synthase kinase 3 to design paralog-selective inhibitors for use in acute myeloid leukemia.
Sci Transl Med, 10, 2018
8SPM
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Crystal structure of NikA in complex Ni-AMA
分子名称: Aspergillomarasmine A, NICKEL (II) ION, Nickel ABC transporter, ...
著者Sychantha, D, Prehna, G, Wright, G.D.
登録日2023-05-03
公開日2024-04-10
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Targeting bacterial nickel transport with aspergillomarasmine A suppresses virulence-associated Ni-dependent enzymes.
Nat Commun, 15, 2024
4YH4
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Crystal structure of human BRD4(1) in complex with 4-[(5-phenylpyridin-3-yl)carbonyl]-3,4-dihydroquinoxalin-2(1H)-one (compound 19d)
分子名称: 4-[(5-phenylpyridin-3-yl)carbonyl]-3,4-dihydroquinoxalin-2(1H)-one, Bromodomain-containing protein 4, GLYCEROL, ...
著者Lakshminarasimhan, D, White, A, Suto, R.K.
登録日2015-02-26
公開日2016-01-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Discovery of a new chemical series of BRD4(1) inhibitors using protein-ligand docking and structure-guided design.
Bioorg.Med.Chem.Lett., 25, 2015
5V8D
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Structure of Bacillus cereus PatB1 with sulfonyl adduct
分子名称: Bacillus cereus PatB1, SULFATE ION
著者Sychantha, D, Little, D.J, Chapman, R.N, Boons, G.J, Robinson, H, Howell, P.L, Clarke, A.J.
登録日2017-03-21
公開日2017-10-18
最終更新日2020-01-08
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献PatB1 is an O-acetyltransferase that decorates secondary cell wall polysaccharides.
Nat. Chem. Biol., 14, 2018
1H6H
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Structure of the PX domain from p40phox bound to phosphatidylinositol 3-phosphate
分子名称: 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE, GLYCEROL, NEUTROPHIL CYTOSOL FACTOR 4
著者Karathanassis, D, Bravo, J, Pacold, M, Perisic, O, Williams, R.L.
登録日2001-06-15
公開日2001-11-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The Crystal Structure of the Px Domain from P40Phox Bound to Phosphatidylinositol 3-Phosphate
Mol.Cell, 8, 2001
1ATL
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Structural interaction of natural and synthetic inhibitors with the VENOM METALLOPROTEINASE, ATROLYSIN C (FORM-D)
分子名称: CALCIUM ION, O-methyl-N-[(2S)-4-methyl-2-(sulfanylmethyl)pentanoyl]-L-tyrosine, Snake venom metalloproteinase atrolysin-D, ...
著者Zhang, D, Botos, I, Gomis-Rueth, F.-X, Doll, R, Blood, C, Njoroge, F.G, Fox, J.W, Bode, W, Meyer, E.F.
登録日1995-05-26
公開日1995-10-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural interaction of natural and synthetic inhibitors with the venom metalloproteinase, atrolysin C (form d).
Proc.Natl.Acad.Sci.USA, 91, 1994
6CZV
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BRD4(BD1) complexed with 2759
分子名称: 1,2-ETHANEDIOL, 1-benzyl-5-(3,5-dimethyl-1,2-oxazol-4-yl)pyridin-2(1H)-one, Bromodomain-containing protein 4
著者Lakshminarasimhan, D, White, A, Suto, R.K.
登録日2018-04-09
公開日2018-09-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Design and Characterization of Novel Covalent Bromodomain and Extra-Terminal Domain (BET) Inhibitors Targeting a Methionine.
J. Med. Chem., 61, 2018
6CZU
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BRD4(BD1) complexed with 3219
分子名称: 1,2-ETHANEDIOL, 5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-({4-[(1R)-1-hydroxyethyl]phenyl}methyl)pyridin-2(1H)-one, Bromodomain-containing protein 4, ...
著者Lakshminarasimhan, D, White, A, Suto, R.K.
登録日2018-04-09
公開日2018-09-26
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Design and Characterization of Novel Covalent Bromodomain and Extra-Terminal Domain (BET) Inhibitors Targeting a Methionine.
J. Med. Chem., 61, 2018
8UK6
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Candida albicans glutaminyl tRNA synthetase (GLN4) in complex with N-pyrimidinyl-beta-thiophenylacrylamide
分子名称: (2E)-N-(pyrimidin-2-yl)-3-(thiophen-2-yl)prop-2-enamide, ZINC ION, glutamine--tRNA ligase
著者Sychantha, D, Wright, G.D.
登録日2023-10-12
公開日2024-03-06
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Allosteric inhibition of tRNA synthetase Gln4 by N-pyrimidinyl-beta-thiophenylacrylamides exerts highly selective antifungal activity.
Cell Chem Biol, 31, 2024
6BT4
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Crystal structure of the SLH domain of Sap from Bacillus anthracis in complex with a pyruvylated SCWP unit
分子名称: 2-(acetylamino)-4-O-{2-(acetylamino)-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranosyl}-2-deoxy-beta-D-glucopyranose, S-layer protein sap, SULFATE ION
著者Sychantha, D, Chapman, R.N, Bamford, N.C, Boons, G.J, Howell, P.L, Clarke, A.J.
登録日2017-12-05
公開日2018-03-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.306 Å)
主引用文献Molecular Basis for the Attachment of S-Layer Proteins to the Cell Wall of Bacillus anthracis.
Biochemistry, 57, 2018
1O7K
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human p47 PX domain complex with sulphates
分子名称: NEUTROPHIL CYTOSOL FACTOR 1, SULFATE ION
著者Karathanassis, D, Bravo, J, Perisic, O, Pacold, C.M, Williams, R.L.
登録日2002-11-07
公開日2002-11-20
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of the Px Domain of P47Phox to Phosphatidylinositol 3.4-Bisphosphate and Phosphatidic Acid is Masked by an Intramolecular Interaction
Embo J., 21, 2002
2GZB
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Bauhinia bauhinioides cruzipain inhibitor (BbCI)
分子名称: IODIDE ION, Kunitz-type proteinase inhibitor BbCI
著者Hansen, D, Macedo-Ribeiro, S, Navarro, M.V.A.S, Garratt, R.C, Oliva, M.L.V.
登録日2006-05-11
公開日2007-07-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a novel cysteinless plant Kunitz-type protease inhibitor.
Biochem.Biophys.Res.Commun., 360, 2007
2K57
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Solution NMR Structure of Putative Lipoprotein from Pseudomonas syringae Gene Locus PSPTO2350. Northeast Structural Genomics Target PsR76A.
分子名称: Putative Lipoprotein
著者Hang, D, Aramini, J.A, Rossi, P, Wang, D, Jiang, M, Maglaqui, M, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2008-06-25
公開日2008-09-30
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of Putative Lipoprotein from Pseudomonas syringae Gene Locus PSPTO2350. Northeast Structural Genomics Target PsR76A.
To be Published
2IWL
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Structure of the PX Domain of Phosphoinositide 3-Kinase-C2alpha
分子名称: PHOSPHATIDYLINOSITOL-4-PHOSPHATE 3-KINASE C2 DOMAIN-CONTAINING ALPHA POLYPEPTIDE, SULFATE ION
著者Karathanassis, D, Bravo, J, Williams, R.L.
登録日2006-07-01
公開日2006-10-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural and Membrane Binding Analysis of the Phox Homology Domain of Phosphoinositide 3-Kinase- C2{Alpha}.
J.Biol.Chem., 281, 2006
4M3Q
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Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1917
分子名称: CHLORIDE ION, MAGNESIUM ION, Tyrosine-protein kinase Mer, ...
著者Zhang, W, Zhang, D, Stashko, M.A, DeRyckere, D, Hunter, D, Kireev, D.B, Miley, M, Cummings, C, Lee, M, Norris-Drouin, J, Stewart, W.M, Sather, S, Zhou, Y, Kirkpatrick, G, Machius, M, Janzen, W.P, Earp, H.S, Graham, D.K, Frye, S, Wang, X.
登録日2013-08-06
公開日2013-11-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.718 Å)
主引用文献Pseudo-Cyclization through Intramolecular Hydrogen Bond Enables Discovery of Pyridine Substituted Pyrimidines as New Mer Kinase Inhibitors.
J.Med.Chem., 56, 2013
1U6D
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Crystal structure of the Kelch domain of human Keap1
分子名称: kelch-like ECH-associated protein 1
著者Li, X, Zhang, D, Hannink, M, Beamer, L.J.
登録日2004-07-29
公開日2004-10-12
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the kelch domain of human keap1
J.Biol.Chem., 279, 2004

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件を2024-11-06に公開中

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