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PDB: 231 件

3NS8
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Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Ubiquitin
著者Zhang, D, LaRonde-LeBlanc, N, Fushman, D.
登録日2010-07-01
公開日2011-07-20
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献Structural and biochemical studies of the open state of Lys48-linked diubiquitin.
Biochim.Biophys.Acta, 1823, 2012
8KFT
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Crystal structure of ZmMOC1 in complex with a nicked Holliday junction soaked in Mn2+ for 15 seconds
分子名称: DNA (25-MER), DNA (33-MER), DNA (5'-D(P*CP*AP*CP*GP*AP*TP*TP*G)-3'), ...
著者Zhang, D, Luo, Z, Lin, Z.
登録日2023-08-16
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions.
Nat Commun, 15, 2024
8KFV
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Crystal structure of ZmMOC1 K229A in complex with a nicked Holliday junction soaked in Mn2+ for 180 seconds
分子名称: 1,2-ETHANEDIOL, DNA (25-MER), DNA (33-MER), ...
著者Zhang, D, Luo, Z, Lin, Z.
登録日2023-08-16
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions.
Nat Commun, 15, 2024
8KFU
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Crystal structure of ZmMOC1 in complex with a nicked Holliday junction soaked in Mn2+ for 180 seconds
分子名称: 1,2-ETHANEDIOL, DNA (25-MER), DNA (33-MER), ...
著者Zhang, D, Luo, Z, Lin, Z.
登録日2023-08-16
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions.
Nat Commun, 15, 2024
8KFS
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Crystal structure of ZmMOC1/nicked Holliday junction complex at ground state
分子名称: DNA (25-MER), DNA (33-MER), DNA (5'-D(P*CP*AP*CP*GP*AP*TP*TP*G)-3'), ...
著者Zhang, D, Luo, Z, Lin, Z.
登録日2023-08-16
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions.
Nat Commun, 15, 2024
8KFW
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Crystal structure of ZmMOC1 K229A in complex with a nicked Holliday junction soaked in Mn2+ for 600 seconds
分子名称: 1,2-ETHANEDIOL, DNA (26-MER), DNA (33-MER), ...
著者Zhang, D, Luo, Z, Lin, Z.
登録日2023-08-16
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions.
Nat Commun, 15, 2024
8KFR
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Crystal structure of ZmMOC1/nicked Holliday junction/Ca2+ complex
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DNA (25-MER), ...
著者Zhang, D, Luo, Z, Lin, Z.
登録日2023-08-16
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions.
Nat Commun, 15, 2024
8P3W
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Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 4
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Glutamate receptor 1 flip isoform, ...
著者Zhang, D, Krieger, J.M, Yamashita, K, Greger, I.
登録日2023-05-18
公開日2023-08-30
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
8P3S
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Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Glutamate receptor 2, ...
著者Zhang, D, Krieger, J.M, Yamashita, K, Greger, I.
登録日2023-05-18
公開日2023-08-30
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
8P3Q
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Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Glutamate receptor 2, ...
著者Zhang, D, Krieger, J.M, Yamashita, K, Greger, I.
登録日2023-05-18
公開日2023-08-30
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
8PIV
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BU of 8piv by Molmil
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Glutamate receptor, ...
著者Zhang, D, Krieger, J.M, Yamashita, K, Greger, I.H.
登録日2023-06-22
公開日2023-08-30
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
8P3V
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Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 3
分子名称: Glutamate receptor 1 flip isoform, Voltage-dependent calcium channel gamma-3 subunit
著者Zhang, D, Krieger, J.M, Yamashita, K, Greger, I.H.
登録日2023-05-18
公開日2023-08-30
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
8P3T
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BU of 8p3t by Molmil
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 1
分子名称: Glutamate receptor 1 flip isoform, Voltage-dependent calcium channel gamma-3 subunit
著者Zhang, D, Krieger, J, Yamashita, K, Greger, I.
登録日2023-05-18
公開日2023-08-30
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
8P3U
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BU of 8p3u by Molmil
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 2
分子名称: Glutamate receptor 1 flip isoform, Voltage-dependent calcium channel gamma-3 subunit
著者Zhang, D, Krieger, J.M, Greger, I.H.
登録日2023-05-18
公開日2023-08-30
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.77 Å)
主引用文献Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.
Nature, 621, 2023
5UG1
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BU of 5ug1 by Molmil
Structure of Streptococcus pneumoniae peptidoglycan O-acetyltransferase A (OatA) C-terminal catalytic domain with methylsulfonyl adduct
分子名称: Acyltransferase, SODIUM ION, methanesulfonic acid
著者Sychantha, D, Jones, C, Little, D.J, Moynihan, P.J, Robinson, H, Galley, N.F, Roper, D.I, Dowson, C.G, Howell, P.L, Clarke, A.J.
登録日2017-01-06
公開日2017-10-25
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献In vitro characterization of the antivirulence target of Gram-positive pathogens, peptidoglycan O-acetyltransferase A (OatA).
PLoS Pathog., 13, 2017
5UFY
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BU of 5ufy by Molmil
Structure of Streptococcus pneumoniae peptidoglycan O-acetyltransferase A (OatA) C-terminal catalytic domain
分子名称: Acyltransferase, SODIUM ION
著者Sychantha, D, Jones, C, Little, D.J, Moynihan, P.J, Robinson, H, Galley, N.F, Roper, D.I, Dowson, C.G, Howell, P.L, Clarke, A.J.
登録日2017-01-06
公開日2017-10-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献In vitro characterization of the antivirulence target of Gram-positive pathogens, peptidoglycan O-acetyltransferase A (OatA).
PLoS Pathog., 13, 2017
3JCE
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BU of 3jce by Molmil
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
分子名称: 16S ribosomal RNA, 23 ribosomal RNA, 30S ribosomal protein S10, ...
著者Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y.
登録日2015-12-01
公開日2016-01-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome
Nat. Struct. Mol. Biol., 23, 2016
3JCD
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BU of 3jcd by Molmil
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y.
登録日2015-12-01
公開日2016-01-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome
Nat. Struct. Mol. Biol., 23, 2016
7OCE
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BU of 7oce by Molmil
Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and CNIH2 (LBD-TMD)
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide, CHOLESTEROL, ...
著者Zhang, D, Watson, J.F, Matthews, P.M, Cais, O, Greger, I.H.
登録日2021-04-26
公開日2021-06-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Gating and modulation of a hetero-octameric AMPA glutamate receptor.
Nature, 594, 2021
7OCA
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BU of 7oca by Molmil
Resting state full-length GluA1/A2 heterotertramer in complex with TARP gamma 8 and CNIH2
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, D, Watson, J.F, Matthews, P.M, Cais, O, Greger, I.H.
登録日2021-04-26
公開日2021-06-09
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Gating and modulation of a hetero-octameric AMPA glutamate receptor.
Nature, 594, 2021
7OCC
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BU of 7occ by Molmil
NTD of resting state GluA1/A2 heterotertramer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 1, ...
著者Zhang, D, Watson, J.F, Matthews, P.M, Cais, O, Greger, I.H.
登録日2021-04-26
公開日2021-06-09
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Gating and modulation of a hetero-octameric AMPA glutamate receptor.
Nature, 594, 2021
5VZ4
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BU of 5vz4 by Molmil
Receptor-growth factor crystal structure at 2.20 Angstrom resolution
分子名称: 1,2-ETHANEDIOL, BROMIDE ION, GDNF family receptor alpha-like, ...
著者Lakshminarasimhan, D, White, A, Suto, R.K.
登録日2017-05-26
公開日2017-09-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Non-homeostatic body weight regulation through a brainstem-restricted receptor for GDF15.
Nature, 550, 2017
2JY5
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BU of 2jy5 by Molmil
NMR structure of Ubiquilin 1 UBA domain
分子名称: Ubiquilin-1
著者Zhang, D, Raasi, S, Fushman, D.
登録日2007-12-06
公開日2008-03-18
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains
J.Mol.Biol., 377, 2008
5VZ3
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BU of 5vz3 by Molmil
Growth Factor Crystal Structure at 1.97 Angstrom Resolution
分子名称: Growth/differentiation factor 15
著者Lakshminarasimhan, D, White, A, Suto, R.K.
登録日2017-05-26
公開日2017-09-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Non-homeostatic body weight regulation through a brainstem-restricted receptor for GDF15.
Nature, 550, 2017
2JY6
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BU of 2jy6 by Molmil
Solution structure of the complex of ubiquitin and ubiquilin 1 UBA domain
分子名称: Ubiquilin-1, Ubiquitin protein
著者Zhang, D, Raasi, S, Fushman, D.
登録日2007-12-06
公開日2008-03-18
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains
J.Mol.Biol., 377, 2008

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件を2024-11-06に公開中

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