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PDB: 1349 results

3QXL
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Crystal structure of the CDC25 Domain from Ral-specific Guanine-nucleotide Exchange Factor RalGPS1a
Descriptor: Ras-specific guanine nucleotide-releasing factor RalGPS1
Authors:Peng, W, Xu, J, Guan, X, Sun, Y, Li, X, Zhang, X.C, Rao, Z.
Deposit date:2011-03-02
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.237 Å)
Cite:Structural study of the Cdc25 domain from Ral-specific guanine-nucleotide exchange factor RalGPS1a.
Protein Cell, 2, 2011
1G14
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NMR SOLUTION STRUCTURE OF THE DNA DODECAMER GGCAAGAAACGG
Descriptor: 5'-D(*CP*CP*GP*TP*TP*TP*CP*TP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*AP*GP*AP*AP*AP*CP*GP*G)-3'
Authors:MacDonald, D, Herbert, K, Zhang, X, Pologruto, T, Lu, P.
Deposit date:2000-10-10
Release date:2001-03-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of an A-tract DNA bend.
J.Mol.Biol., 306, 2001
2Z41
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Crystal Structure Analysis of the Ski2-type RNA helicase
Descriptor: MAGNESIUM ION, putative ski2-type helicase
Authors:Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2007-06-12
Release date:2008-04-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3
Protein Sci., 17, 2008
3EA2
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Crystal Structure of the Myo-inositol bound Y247S/Y251S Mutant of Phosphatidylinositol-Specific Phospholipase C from Bacillus Thuringiensis
Descriptor: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1-phosphatidylinositol phosphodiesterase, ZINC ION
Authors:Shi, X, Shao, C, Zhang, X, Zambonelli, C, Redfied, A.G, Head, J.F, Seaton, B.A, Roberts, M.F.
Deposit date:2008-08-24
Release date:2009-04-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Modulation of bacillus thuringiensis phosphatidylinositol-specific phospholipase C activity by mutations in the putative dimerization interface.
J.Biol.Chem., 284, 2009
5X58
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Prefusion structure of SARS-CoV spike glycoprotein, conformation 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Yuan, Y, Cao, D, Zhang, Y, Ma, J, Qi, J, Wang, Q, Lu, G, Wu, Y, Yan, J, Shi, Y, Zhang, X, Gao, G.F.
Deposit date:2017-02-15
Release date:2017-05-03
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains
Nat Commun, 8, 2017
1TU3
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Crystal Structure of Rab5 complex with Rabaptin5 C-terminal Domain
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Rab GTPase binding effector protein 1, ...
Authors:Zhu, G, Zhai, P, Liu, J, Terzyan, S, Li, G, Zhang, X.C.
Deposit date:2004-06-24
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural basis of Rab5-Rabaptin5 interaction in endocytosis
Nat.Struct.Mol.Biol., 11, 2004
8GWA
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Structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene, ...
Authors:Chen, J.H, Zhang, X.
Deposit date:2022-09-16
Release date:2022-11-23
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-electron microscopy structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium.
J Integr Plant Biol, 65, 2023
4EJZ
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Structure of MBOgg1 in complex with low affinity DNA ligand
Descriptor: 3-Methyladenine DNA glycosylase, DNA (5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*T*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3')
Authors:Jiang, T, Yu, H.J, Bi, L.J, Zhang, X.E, Yang, M.Z.
Deposit date:2012-04-08
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structures of MBOgg1 in complex with two abasic DNA ligands
J.Struct.Biol., 181, 2013
5X59
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Prefusion structure of MERS-CoV spike glycoprotein, three-fold symmetry
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S protein
Authors:Yuan, Y, Cao, D, Zhang, Y, Ma, J, Qi, J, Wang, Q, Lu, G, Wu, Y, Yan, J, Shi, Y, Zhang, X, Gao, G.F.
Deposit date:2017-02-15
Release date:2017-05-03
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains
Nat Commun, 8, 2017
5XEX
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Crystal structure of S.aureus PNPase catalytic domain
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, PYROPHOSPHATE, ...
Authors:Wang, X, Zhang, X, Zang, J.
Deposit date:2017-04-06
Release date:2017-10-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enolase binds to RnpA in competition with PNPase in Staphylococcus aureus
FEBS Lett., 591, 2017
8HI2
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Structure of EV71 VLP frozen at -183 degree embedded in crystalline ice
Descriptor: Genome polyprotein, Genome polyprotein (Fragment)
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-18
Release date:2023-02-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8HHS
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BU of 8hhs by Molmil
Structure of human apoferritin embedded in crystalline ice
Descriptor: Ferritin heavy chain
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-17
Release date:2023-02-15
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
1QQR
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BU of 1qqr by Molmil
CRYSTAL STRUCTURE OF STREPTOKINASE DOMAIN B
Descriptor: STREPTOKINASE DOMAIN B
Authors:Spraggon, G, Zhang, X.X, Ponting, C.P, Fox, V.F, Phillips, C, Smith, R.A.G, Jones, E.Y, Dobson, C, Stuart, D.I.
Deposit date:1999-06-07
Release date:1999-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Streptokinse Domain B
To be Published
6LT0
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BU of 6lt0 by Molmil
cryo-EM structure of C9ORF72-SMCR8-WDR41
Descriptor: Guanine nucleotide exchange C9orf72, Guanine nucleotide exchange protein SMCR8, WD repeat-containing protein 41
Authors:Tang, D, Sheng, J, Xu, L, Zhan, X, Yan, C, Qi, S.
Deposit date:2020-01-21
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of C9ORF72-SMCR8-WDR41 reveals the role as a GAP for Rab8a and Rab11a.
Proc.Natl.Acad.Sci.USA, 117, 2020
7WB4
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BU of 7wb4 by Molmil
Cryo-EM structure of the NR subunit from X. laevis NPC
Descriptor: GATOR complex protein SEC13, MGC154553 protein, MGC83295 protein, ...
Authors:Huang, G, Zhan, X, Shi, Y.
Deposit date:2021-12-15
Release date:2022-03-02
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Cryo-EM structure of the nuclear ring from Xenopus laevis nuclear pore complex.
Cell Res., 32, 2022
3F8I
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Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group P21
Descriptor: 5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3', E3 ubiquitin-protein ligase UHRF1
Authors:Hashimoto, H, Horton, J.R, Zhang, X, Cheng, X.
Deposit date:2008-11-12
Release date:2009-01-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications.
Epigenetics, 4, 2009
226L
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BU of 226l by Molmil
GENERATING LIGAND BINDING SITES IN T4 LYSOZYME USING DEFICIENCY-CREATING SUBSTITUTIONS
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Baldwin, E.P, Baase, W.A, Zhang, X.-J, Feher, V, Matthews, B.W.
Deposit date:1997-06-25
Release date:1998-03-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions.
J.Mol.Biol., 277, 1998
223L
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BU of 223l by Molmil
GENERATING LIGAND BINDING SITES IN T4 LYSOZYME USING DEFICIENCY-CREATING SUBSTITUTIONS
Descriptor: BENZENE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Baldwin, E.P, Baase, W.A, Zhang, X.-J, Feher, V, Matthews, B.W.
Deposit date:1997-06-25
Release date:1998-03-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions.
J.Mol.Biol., 277, 1998
3KV9
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BU of 3kv9 by Molmil
Structure of KIAA1718 Jumonji domain
Descriptor: FE (II) ION, JmjC domain-containing histone demethylation protein 1D, OXYGEN MOLECULE
Authors:Horton, J.R, Upadhyay, A.K, Qi, H.H, Zhang, X, Shi, Y, Cheng, X.
Deposit date:2009-11-29
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.
Nat.Struct.Mol.Biol., 17, 2010
3KXL
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crystal structure of SsGBP mutation variant G235S
Descriptor: GTP-binding protein (HflX), THIOCYANATE ION
Authors:Huang, B, Li, X, Zhang, X.C, Rao, Z.
Deposit date:2009-12-03
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Functional study on GTP hydrolysis by the GTP binding protein from Sulfolobus solfataricus, a member of the HflX family.
J.Biochem., 2010
222L
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BU of 222l by Molmil
GENERATING LIGAND BINDING SITES IN T4 LYSOZYME USING DEFICIENCY-CREATING SUBSTITUTIONS
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Baldwin, E.P, Baase, W.A, Zhang, X.-J, Feher, V, Matthews, B.W.
Deposit date:1997-06-25
Release date:1998-03-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions.
J.Mol.Biol., 277, 1998
5X5S
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BU of 5x5s by Molmil
Ligand induced structure of AmyP-SBD
Descriptor: Amylase
Authors:Li, X, Yu, J, Sun, H, Zhang, X.
Deposit date:2017-02-17
Release date:2017-04-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Ligand binding induced folding of a novel CBM69 starch binding domain
To Be Published
3WY7
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BU of 3wy7 by Molmil
Crystal structure of Mycobacterium smegmatis 7-Keto-8-aminopelargonic acid (KAPA) synthase BioF
Descriptor: 8-amino-7-oxononanoate synthase
Authors:Fan, S.H, Li, D.F, Wang, D.C, Chen, G.J, Zhang, X.E, Bi, L.J.
Deposit date:2014-08-20
Release date:2014-12-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and function of Mycobacterium smegmatis 7-keto-8-aminopelargonic acid (KAPA) synthase
Int.J.Biochem.Cell Biol., 58C, 2014
3KXI
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crystal structure of SsGBP and GDP complex
Descriptor: GTP-binding protein (HflX), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Huang, B, Li, X, Zhang, X.C, Rao, Z.
Deposit date:2009-12-03
Release date:2010-05-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Functional study on GTP hydrolysis by the GTP binding protein from Sulfolobus solfataricus, a member of the HflX family.
J.Biochem., 2010
227L
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BU of 227l by Molmil
GENERATING LIGAND BINDING SITES IN T4 LYSOZYME USING DEFICIENCY-CREATING SUBSTITUTIONS
Descriptor: BENZENE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Baldwin, E.P, Baase, W.A, Zhang, X.-J, Feher, V, Matthews, B.W.
Deposit date:1997-06-25
Release date:1998-03-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions.
J.Mol.Biol., 277, 1998

226262

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