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PDB: 45 件

8HTY
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Candida boidinii Formate Dehydrogenase Crystal Structure at 1.4 Angstrom Resolution
分子名称: Formate dehydrogenase, SULFATE ION
著者Gul, M, Yuksel, B, Bulut, H, DeMirci, H.
登録日2022-12-22
公開日2023-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
8IQ7
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Ambient Temperature Crystal Structure of Candida boidinii Formate Dehydrogenase
分子名称: Formate dehydrogenase
著者Gul, M, DeMirci, H.
登録日2023-03-16
公開日2023-03-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
8IVJ
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Candida boidinii Formate Dehydrogenase V120T Mutant
分子名称: Formate dehydrogenase
著者Gul, M, Yuksel, B, Bulut, H, DeMirci, H.
登録日2023-03-28
公開日2023-05-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
9CWS
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Bufavirus 1 at pH 2.6
分子名称: VP1
著者Gulkis, M.C, McKenna, R, Bennett, A.D.
登録日2024-07-30
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes
Viruses, 16, 2024
9CV9
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Bufavirus 1 at pH 4.0
分子名称: VP1
著者Gulkis, M.C, McKenna, R, Bennett, A.D.
登録日2024-07-28
公開日2024-08-28
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes
Viruses, 16, 2024
9CV0
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Bufavirus 1 at pH 7.4
分子名称: VP1
著者Gulkis, M.C, McKenna, R, Bennett, A.D.
登録日2024-07-27
公開日2024-08-28
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes
Viruses, 16, 2024
7OSA
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Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
著者Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2021-06-08
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
7OSM
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Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
著者Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2021-06-09
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
6CJ7
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Crystal structure of Manduca sexta Serine protease inhibitor (Serpin)-12
分子名称: Serpin-12
著者Gulati, M, Hu, Y, Peng, S, Pathak, P.K, Wang, Y, Deng, J, Jiang, H.
登録日2018-02-26
公開日2018-07-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Manduca sexta serpin-12 controls the prophenoloxidase activation system in larval hemolymph.
Insect Biochem. Mol. Biol., 99, 2018
3BP9
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Structure of B-tropic MLV capsid N-terminal domain
分子名称: GLYCEROL, Gag protein, ISOPROPYL ALCOHOL
著者Gulnahar, M.B, Dodding, M.P, Goldstone, D.C, Haire, L.F, Stoye, J.P, Taylor, I.A.
登録日2007-12-18
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of B-MLV capsid amino-terminal domain reveals key features of viral tropism, gag assembly and core formation
J.Mol.Biol., 376, 2008
3B46
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Crystal Structure of Bna3p, a Putative Kynurenine Aminotransferase from Saccharomyces cerevisiae
分子名称: Aminotransferase BNA3
著者Wogulis, M.
登録日2007-10-23
公開日2008-02-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Identification of Formyl Kynurenine Formamidase and Kynurenine Aminotransferase from Saccharomyces cerevisiae Using Crystallographic, Bioinformatic and Biochemical Evidence.
Biochemistry, 47, 2008
2ERB
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AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
分子名称: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, MAGNESIUM ION, odorant binding protein
著者Wogulis, M, Morgan, T, Ishida, Y, Leal, W.S, Wilson, D.K.
登録日2005-10-24
公開日2005-12-13
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of an odorant binding protein from Anopheles gambiae: Evidence for a common ligand release mechanism.
Biochem.Biophys.Res.Commun., 339, 2006
2FJ0
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Crystal Structure of Juvenile Hormone Esterase from Manduca sexta, with OTFP covalently attached
分子名称: 1,1,1-TRIFLUORO-3-(OCTYLTHIO)ACETONE, Carboxylic ester hydrolase
著者Wogulis, M, Wilson, D.K.
登録日2005-12-30
公開日2006-05-23
最終更新日2015-06-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural studies of a potent insect maturation inhibitor bound to the juvenile hormone esterase of Manduca sexta.
Biochemistry, 45, 2006
8X34
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Human Kelch like-ECH Associated Protein 1 (Keap1)
分子名称: Kelch-like ECH-associated protein 1
著者Yilmaz, M, Gul, M, DeMirci, H.
登録日2023-11-11
公開日2023-11-22
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Human KEAP1 Kelch domain at ambient temperature
To Be Published
7VK2
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Crystal Structure of SARS-CoV-2 Mpro at 2.0 A resolution -9
分子名称: 3C-like proteinase
著者DeMirci, H, Gul, M.
登録日2021-09-29
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Case Study of High-Throughput Drug Screening and Remote Data Collection for SARS-CoV-2 Main Protease by Using Serial Femtosecond X-ray Crystallography
Crystals, 11, 2021
5ME7
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Crystal Structure of eiF4E from C. melo
分子名称: Eukaryotic transcription initiation factor 4E, GLYCEROL
著者Querol-Audi, J, Silva, C, Miras, M, Aranda-Regules, M, Verdaguer, N.
登録日2016-11-14
公開日2017-08-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of eIF4E in Complex with an eIF4G Peptide Supports a Universal Bipartite Binding Mode for Protein Translation.
Plant Physiol., 174, 2017
5ME5
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Crystal Structure of eiF4E from C. melo bound to a eIF4G peptide
分子名称: Eukaryotic transcription initiation factor 4E, SULFATE ION, eIF4G
著者Querol-Audi, J, Silva, C, Miras, M, Truniger, V, Aranda-Regules, M, Verdaguer, N.
登録日2016-11-14
公開日2017-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of eIF4E in Complex with an eIF4G Peptide Supports a Universal Bipartite Binding Mode for Protein Translation.
Plant Physiol., 174, 2017
5ME6
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Crystal Structure of eiF4E from C. melo bound to a CAP analog
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Eukaryotic transcription initiation factor 4E
著者Querol-Audi, J, Silva, C, Miras, M, Aranda-Regules, M, Verdaguer, N.
登録日2016-11-14
公開日2017-08-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of eIF4E in Complex with an eIF4G Peptide Supports a Universal Bipartite Binding Mode for Protein Translation.
Plant Physiol., 174, 2017
5OBM
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Crystal structure of Gentamicin bound to the yeast 80S ribosome
分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 18S ribosomal RNA, 25S ribosomal RNA, ...
著者Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G.
登録日2017-06-28
公開日2017-12-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5VM0
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The hapten triclocarban bound to the single domain camelid nanobody VHH T9
分子名称: 1,2-ETHANEDIOL, Camelid Nanobody VHH T9, N-(4-chlorophenyl)-N'-(3,4-dichlorophenyl)urea
著者Wogulis, L.A, Wogulis, M.D, Tabares-da Rosa, S, Gonzalez-Sapienza, G, Wilson, D.K.
登録日2017-04-26
公開日2018-05-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structure and specificity of several triclocarban-binding single domain camelid antibody fragments.
J. Mol. Recognit., 32, 2019
5NDK
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Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G.
登録日2017-03-08
公開日2017-12-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDJ
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Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G.
登録日2017-03-08
公開日2018-05-02
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDG
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Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G.
登録日2017-03-08
公開日2017-12-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3ZJV
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Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation
分子名称: LEUCINE--TRNA LIGASE, TRNALEU5 UAA ISOACCEPTOR
著者Cusack, S, Palencia, A, Crepin, T, Hernandez, V, Akama, T, Baker, S.J, Bu, W, Feng, L, Freund, Y.R, Liu, L, Meewan, M, Mohan, M, Mao, W, Rock, F.L, Sexton, H, Sheoran, A, Zhang, Y, Zhang, Y, Zhou, Y, Nieman, J.A, Anugula, M.R, Keramane, E.M, Savariraj, K, Reddy, D.S, Sharma, R, Subedi, R, Singh, R, OLeary, A, Simon, N.L, DeMarsh, P.L, Mushtaq, S, Warner, M, Livermore, D.M, Alley, M.R.K, Plattner, J.J.
登録日2013-01-18
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria.
Antimicrob.Agents Chemother., 57, 2013
3ZJT
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Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation
分子名称: LEUCYL-TRNA SYNTHETASE, MAGNESIUM ION, TRNALEU5 UAA ISOACCEPTOR
著者Cusack, S, Palencia, A, Crepin, T, Hernandez, V, Akama, T, Baker, S.J, Bu, W, Feng, L, Freund, Y.R, Liu, L, Meewan, M, Mohan, M, Mao, W, Rock, F.L, Sexton, H, Sheoran, A, Zhang, Y, Zhang, Y, Zhou, Y, Nieman, J.A, Anugula, M.R, Keramane, E.M, Savariraj, K, Reddy, D.S, Sharma, R, Subedi, R, Singh, R, OLeary, A, Simon, N.L, DeMarsh, P.L, Mushtaq, S, Warner, M, Livermore, D.M, Alley, M.R.K, Plattner, J.J.
登録日2013-01-18
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria.
Antimicrob.Agents Chemother., 57, 2013

 

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