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PDB: 42 件

1RF8
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Solution structure of the yeast translation initiation factor eIF4E in complex with m7GDP and eIF4GI residues 393 to 490
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Eukaryotic initiation factor 4F subunit p150, Eukaryotic translation initiation factor 4E, ...
著者Gross, J.D, Moerke, N.J, von der Haar, T, Lugovskoy, A.A, Sachs, A.B, McCarthy, J.E.G, Wagner, G.
登録日2003-11-07
公開日2003-12-23
最終更新日2024-03-06
実験手法SOLUTION NMR
主引用文献Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E.
Cell(Cambridge,Mass.), 115, 2003
1U8B
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Crystal structure of the methylated N-ADA/DNA complex
分子名称: 5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(*TP*AP*AP*AP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3', ...
著者He, C, Hus, J.-C, Sun, L.J, Zhou, P, Norman, D.P.G, Dotsch, V, Gross, J.D, Lane, W.S, Wagner, G, Verdine, G.L.
登録日2004-08-05
公開日2005-10-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada.
Mol.Cell, 20, 2005
3OEO
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The crystal structure E. coli Spy
分子名称: CADMIUM ION, Spheroplast protein Y
著者Kwon, E, Kim, D.Y, Gross, C.A, Gross, J.D, Kim, K.K.
登録日2010-08-13
公開日2010-09-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The crystal structure Escherichia coli Spy.
Protein Sci., 19, 2010
4UU3
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Ferulic acid decarboxylase from Enterobacter sp.
分子名称: FERULIC ACID DECARBOXYLASE
著者Hromic, A, Pavkov-Keller, T, Steinkellner, G, Lyskowski, A, Wuensch, C, Gross, J, Fuchs, M, Fauland, K, Glueck, S.M, Faber, K, Gruber, K.
登録日2014-07-24
公開日2015-06-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Regioselective Enzymatic Beta-Carboxylation of Para-Hydroxy-Styrene Derivatives Catalyzed by Phenolic Acid Decarboxylases.
Adv. Synth. Catal., 357, 2015
2KEM
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Extended structure of citidine deaminase domain of APOBEC3G
分子名称: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
著者Harjes, E, Gross, P.J, Chen, K, Lu, Y, Shindo, K, Nowarski, R, Gross, J.D, Kotler, M, Harris, R.S, Matsuo, H.
登録日2009-01-30
公開日2009-06-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model
J.Mol.Biol., 389, 2009
5KQ1
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Crystal structure of S. pombe Dcp1/Dcp2 in complex with H. sapiens PNRC2
分子名称: Proline-rich nuclear receptor coactivator 2, mRNA decapping complex subunit 2, mRNA-decapping enzyme subunit 1
著者Mugridge, J.S, Ziemniak, M, Jemielity, J, Gross, J.D.
登録日2016-07-05
公開日2016-10-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structural basis of mRNA-cap recognition by Dcp1-Dcp2.
Nat.Struct.Mol.Biol., 23, 2016
5KQ4
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Crystal structure of S. pombe Dcp1/Dcp2 in complex with H. sapiens PNRC2 and synthetic cap analog
分子名称: Proline-rich nuclear receptor coactivator 2, [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate, mRNA decapping complex subunit 2, ...
著者Mugridge, J.S, Ziemniak, M, Jemielity, J, Gross, J.D.
登録日2016-07-05
公開日2016-10-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structural basis of mRNA-cap recognition by Dcp1-Dcp2.
Nat.Struct.Mol.Biol., 23, 2016
6P59
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Crystal structure of SIVrcm Vif-CBFbeta-ELOB-ELOC complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Core-binding factor subunit beta, Elongin-B, ...
著者Binning, J.M, Chesarino, N.M, Emerman, M, Gross, J.D.
登録日2019-05-29
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.942214 Å)
主引用文献Structural Basis for a Species-Specific Determinant of an SIV Vif Protein toward Hominid APOBEC3G Antagonism.
Cell Host Microbe, 26, 2019
3IFQ
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Interction of plakoglobin and beta-catenin with desmosomal cadherins
分子名称: E-cadherin, SULFATE ION, plakoglobin
著者Choi, H.-J, Gross, J.C, Pokutta, S, Weis, W.I.
登録日2009-07-24
公開日2009-09-15
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Interactions of plakoglobin and beta-catenin with desmosomal cadherins: basis of selective exclusion of alpha- and beta-catenin from desmosomes.
J.Biol.Chem., 284, 2009
2JVB
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Solution Structure of Catalytic Domain of yDcp2
分子名称: mRNA-decapping enzyme subunit 2
著者Deshmukh, M, Gross, J.
登録日2007-09-16
公開日2008-03-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献mRNA Decapping Is Promoted by an RNA-Binding Channel in Dcp2.
Mol.Cell, 29, 2008
2WO8
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MMP12 complex with a beta hydroxy carboxylic acid
分子名称: (3S)-5-biphenyl-4-yl-3-hydroxypentanoic acid, CALCIUM ION, GLYCEROL, ...
著者Holmes, I.P, Gaines, S, Watson, S.P, Lorthioir, O, Walker, A, Baddeley, S.J, Herbert, S, Egan, D, Convery, M.A, Singh, O.M.P, Gross, J.W, Strelow, J.M, Smith, R.H, Amour, A.J, Brown, D, Martin, S.L.
登録日2009-07-22
公開日2009-09-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Identification of Beta-Hydroxy Carboxylic Acids as Selective Mmp-12 Inhibitors.
Bioorg.Med.Chem.Lett., 19, 2009
3V67
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Periplasmic domain of Vibrio parahaemolyticus CpxA
分子名称: Sensor protein CpxA
著者Kwon, E, Kim, D.Y, Ngo, T.D, Gross, J.D, Kim, K.K.
登録日2011-12-19
公開日2012-09-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of the periplasmic domain of Vibrio parahaemolyticus CpxA
Protein Sci., 21, 2012
2WO9
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MMP12 complex with a beta hydroxy carboxylic acid
分子名称: (3S)-5-(4'-ACETYLBIPHENYL-4-YL)-3-HYDROXYPENTANOIC ACID, CALCIUM ION, GLYCEROL, ...
著者Holmes, I.P, Gaines, S, Watson, S.P, Lorthioir, O, Walker, A, Baddeley, S.J, Herbert, S, Egan, D, Convery, M.A, Singh, O.M.P, Gross, J.W, Strelow, J.M, Smith, R.H, Amour, A.J, Brown, D, Martin, S.L.
登録日2009-07-22
公開日2009-09-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The Identification of Beta-Hydroxy Carboxylic Acids as Selective Mmp-12 Inhibitors.
Bioorg.Med.Chem.Lett., 19, 2009
2WOA
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MMP12 complex with a beta hydroxy carboxylic acid
分子名称: (3S)-5-(9H-FLUOREN-2-YL)-3-HYDROXYPENTANOIC ACID, CALCIUM ION, GLYCEROL, ...
著者Holmes, I.P, Gaines, S, Watson, S.P, Lorthioir, O, Walker, A, Baddeley, S.J, Herbert, S, Egan, D, Convery, M.A, Singh, O.M.P, Gross, J.W, Strelow, J.M, Smith, R.H, Amour, A.J, Brown, D, Martin, S.L.
登録日2009-07-22
公開日2009-09-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The Identification of Beta-Hydroxy Carboxylic Acids as Selective Mmp-12 Inhibitors.
Bioorg.Med.Chem.Lett., 19, 2009
4UU2
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Ferulic acid decarboxylase from Enterobacter sp., single mutant
分子名称: FERULIC ACID DECARBOXYLASE, GLYCINE, PHOSPHATE ION, ...
著者Hromic, A, Pavkov-Keller, T, Steinkellner, G, Lyskowski, A, Wuensch, C, Gross, J, Fuchs, M, Fauland, K, Glueck, S.M, Faber, K, Gruber, K.
登録日2014-07-24
公開日2015-06-10
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Regioselective Enzymatic Beta-Carboxylation of Para-Hydroxy-Styrene Derivatives Catalyzed by Phenolic Acid Decarboxylases.
Adv. Synth. Catal., 357, 2015
6C3R
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BU of 6c3r by Molmil
Cricket paralysis virus RNAi suppressor protein CrPV-1A
分子名称: Cricket paralysis virus 1A protein
著者Nayak, A, Kim, D.Y, Andino, R, Gross, J.
登録日2018-01-10
公開日2018-10-17
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability.
Cell Host Microbe, 24, 2018
1ZGW
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BU of 1zgw by Molmil
NMR structure of E. Coli Ada protein in complex with DNA
分子名称: 5'-D(*GP*CP*AP*AP*AP*TP*TP*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*A)-3', 5'-D(*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*TP*AP*AP*TP*TP*TP*GP*C)-3', Ada polyprotein, ...
著者He, C, Hus, J.C, Sun, L.J, Zhou, P, Norman, D.P, Doetsch, V, Wei, H, Gross, J.D, Lane, W.S, Wagner, G, Verdine, G.L.
登録日2005-04-22
公開日2005-10-18
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献A Methylation-Dependent Electrostatic Switch Controls DNA Repair and Transcriptional Activation by E. coli Ada.
Mol.Cell, 20, 2005
1KET
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The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with thymidine diphosphate bound
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, THYMIDINE-5'-DIPHOSPHATE, dTDP-D-glucose 4,6-dehydratase
著者Allard, S.T.M, Beis, K, Giraud, M.-F, Hegeman, A.D, Gross, J.W, Whitfield, C, Graninger, M, Messner, P, Allen, A.G, Naismith, J.H.
登録日2001-11-17
公開日2002-01-25
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Toward a structural understanding of the dehydratase mechanism.
Structure, 10, 2002
1KEU
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The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Salmonella enterica serovar Typhimurium with dTDP-D-glucose bound
分子名称: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, dTDP-D-glucose 4,6-dehydratase
著者Allard, S.T.M, Beis, K, Giraud, M.-F, Hegeman, A.D, Gross, J.W, Whitfield, C, Graninger, M, Messner, P, Allen, A.G, Naismith, J.H.
登録日2001-11-17
公開日2002-01-25
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Toward a structural understanding of the dehydratase mechanism.
Structure, 10, 2002
1KEP
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The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-xylose bound
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE, ...
著者Allard, S.T.M, Beis, K, Giraud, M.-F, Hegeman, A.D, Gross, J.W, Whitfield, C, Graninger, M, Messner, P, Allen, A.G, Naismith, J.H.
登録日2001-11-16
公開日2002-01-25
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Toward a structural understanding of the dehydratase mechanism.
Structure, 10, 2002
1KEW
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The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Salmonella enterica serovar Typhimurium with thymidine diphosphate bound
分子名称: GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, THYMIDINE-5'-DIPHOSPHATE, ...
著者Allard, S.T.M, Beis, K, Giraud, M.-F, Hegeman, A.D, Gross, J.W, Whitfield, C, Graninger, M, Messner, P, Allen, A.G, Naismith, J.H.
登録日2001-11-17
公開日2002-01-25
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Toward a structural understanding of the dehydratase mechanism.
Structure, 10, 2002
1KER
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The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-D-glucose bound
分子名称: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, ...
著者Allard, S.T.M, Beis, K, Giraud, M.-F, Hegeman, A.D, Gross, J.W, Whitfield, C, Graninger, M, Messner, P, Allen, A.G, Naismith, J.H.
登録日2001-11-17
公開日2002-01-25
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Toward a structural understanding of the dehydratase mechanism.
Structure, 10, 2002
6AM0
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Crystal structure of K. lactis Edc1-Dcp1-Dcp2-Edc3 decapping complex with synthetic cap substrate analog
分子名称: KLLA0A01474p, KLLA0A11308p, KLLA0E01827p, ...
著者Mugridge, J.S, Gross, J.D.
登録日2017-08-08
公開日2018-03-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Structure of the activated Edc1-Dcp1-Dcp2-Edc3 mRNA decapping complex with substrate analog poised for catalysis.
Nat Commun, 9, 2018
1TVC
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FAD and NADH binding domain of methane monooxygenase reductase from Methylococcus capsulatus (Bath)
分子名称: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, METHANE MONOOXYGENASE COMPONENT C
著者Chatwood, L.L, Mueller, J, Gross, J.D, Wagner, G, Lippard, S.J.
登録日2004-06-29
公開日2004-10-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR Structure of the Flavin Domain from Soluble Methane Monooxygenase Reductase from Methylococcus capsulatus (Bath)
Biochemistry, 43, 2004
4KG4
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Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain (E198Q mutation)
分子名称: mRNA-decapping enzyme subunit 2
著者Aglietti, R.A, Floor, S.N, Gross, J.D.
登録日2013-04-28
公開日2013-08-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013

 

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