Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 26 件
1T28
DownloadVisualize
BU of 1t28 by Molmil
High resolution structure of a picornaviral internal cis-acting replication element
分子名称: 34-MER
著者Thiviyanathan, V, Yang, Y, Kaluarachchi, K, Reynbrand, R, Gorenstein, D.G, Lemon, S.M.
登録日2004-04-20
公開日2004-08-10
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献High resolution structure of a picornaviral internal cis-acting replication element(cre).
Proc.Natl.Acad.Sci.USA, 101, 2004
1K1R
DownloadVisualize
BU of 1k1r by Molmil
HETERODUPLEX OF CHIRALLY PURE R-METHYLPHOSPHONATE/DNA DUPLEX
分子名称: 5'-D(*CP*(CMR)P*(RMP)P*(RMP)P*(RMP)P*(CMR)P*(RMP))-3', 5'-D(*TP*GP*TP*TP*TP*GP*GP*C)-3'
著者Thiviyanathan, V, Vyazovkina, K.V, Gozansky, E.K, Bichenkova, E, Abramova, T.V, Luxon, B.A, Lebedev, A.V, Gorenstein, D.G.
登録日2001-09-25
公開日2002-06-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of hybrid backbone methylphosphonate DNA heteroduplexes: effect of R and S stereochemistry.
Biochemistry, 41, 2002
1K1H
DownloadVisualize
BU of 1k1h by Molmil
HETERODUPLEX OF CHIRALLY PURE METHYLPHOSPHONATE/DNA DUPLEX
分子名称: 5'-D(*CP*(CMR)P*(RMP)P*(RMP)P*(SMP)P*(CMR)P*(RMP))-3', 5'-D(*TP*GP*TP*TP*TP*GP*GP*C)-3'
著者Thiviyanathan, V, Vyazovkina, K.V, Gozansky, E.K, Bichenchova, E, Abramova, T.V, Luxon, B.A, Lebedev, A.V, Gorenstein, D.G.
登録日2001-09-25
公開日2002-06-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of hybrid backbone methylphosphonate DNA heteroduplexes: effect of R and S stereochemistry.
Biochemistry, 41, 2002
2H0P
DownloadVisualize
BU of 2h0p by Molmil
NMR Structure of the Dengue-4 virus Envelope Protein Domain III
分子名称: Envelope glycoprotein
著者Volk, D.E, Lee, Y, Li, X, Thiviyanathan, V, Barrett, A.D.T, Gorenstein, D.G.
登録日2006-05-15
公開日2007-03-27
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Solution structure of the envelope protein domain III of dengue-4 virus.
Virology, 364, 2007
1Z3R
DownloadVisualize
BU of 1z3r by Molmil
Solution structure of the Omsk Hemhorraghic Fever Envelope Protein Domain III
分子名称: polyprotein
著者Volk, D.E, Chavez, L, Beasley, D.W, Barrett, A.D, Gorenstein, D.G.
登録日2005-03-14
公開日2006-03-14
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structure of the envelope protein domain III of Omsk hemorrhagic fever virus.
Virology, 351, 2006
1ONM
DownloadVisualize
BU of 1onm by Molmil
Solution Structure of a DNA duplex containing A:G mismatch. d(GCTTCAGTCGT):d(ACGACGGAAGC)
分子名称: 5'-D(*AP*CP*GP*AP*CP*GP*GP*AP*AP*GP*C)-3', 5'-D(*GP*CP*TP*TP*CP*AP*GP*TP*CP*GP*T)-3'
著者Sanchez, A.M, Volk, D.E, Gorenstein, D.G, Lloyd, R.S.
登録日2003-02-28
公開日2003-11-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Initiation of repair of A/G mismatches is modulated by sequence context
DNA REPAIR, 2, 2003
1BPS
DownloadVisualize
BU of 1bps by Molmil
MINOR CONFORMER OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA
分子名称: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*(BAP)AP*CP*GP*AP*G)-3')
著者Schwartz, J.S, Rice, J.S, Luxon, B.A, Sayer, J.M, Xie, G, Yeh, H.J.C, Liu, X, Jerina, D.M, Gorenstein, D.G.
登録日1998-08-06
公開日1998-08-19
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[a]pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modified deoxyadenosine.
Biochemistry, 36, 1997
1S6N
DownloadVisualize
BU of 1s6n by Molmil
NMR Structure of Domain III of the West Nile Virus Envelope Protein, Strain 385-99
分子名称: envelope glycoprotein
著者Volk, D.E, Beasley, D.W, Kallick, D.A, Holbrook, M.R, Barrett, A.D, Gorenstein, D.G.
登録日2004-01-26
公開日2004-07-06
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution Structure and Antibody Binding Studies of the Envelope Protein Domain III from the New York Strain of West Nile Virus
J.Biol.Chem., 279, 2004
1EKW
DownloadVisualize
BU of 1ekw by Molmil
NMR STRUCTURE OF A DNA THREE-WAY JUNCTION
分子名称: DNA (5'-D(*CP*GP*GP*TP*GP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*CP*AP*CP*CP*G)-3'), DNA (5'-D(*GP*GP*AP*CP*GP*TP*CP*GP*CP*AP*GP*C)-3')
著者Thiviyanathan, V, Luxon, B.A, Leontis, N.B, Donne, D, Gorenstein, D.G.
登録日2000-03-09
公開日2000-03-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Hybrid-hybrid matrix structural refinement of a DNA three-way junction from 3D NOESY-NOESY.
J.Biomol.NMR, 14, 1999
1OZO
DownloadVisualize
BU of 1ozo by Molmil
Three-dimensional solution structure of apo-S100P protein determined by NMR spectroscopy
分子名称: S-100P protein
著者Lee, Y.-C, Volk, D.E, Thiviyanathan, V, Kleerekoper, Q, Gribenko, A.V, Zhang, S, Gorenstein, D.G, Makhatadze, G.I, Luxon, B.A.
登録日2003-04-09
公開日2004-04-20
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR structure of the Apo-S100P protein.
J.Biomol.Nmr, 29, 2004
1DXA
DownloadVisualize
BU of 1dxa by Molmil
BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA
分子名称: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*AP*CP*GP*AP*G)-3')
著者Yeh, H.J.C, Sayer, J.M, Liu, X, Altieri, A.S, Byrd, R.A, Lakshman, M.K, Yagi, H, Schurter, E.J, Gorenstein, D.G, Jerina, D.M.
登録日1995-09-01
公開日1995-12-07
最終更新日2024-03-13
実験手法SOLUTION NMR
主引用文献NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual syn glycosidic torsion angle at the modified dA
Biochemistry, 34, 1995
1R4H
DownloadVisualize
BU of 1r4h by Molmil
NMR Solution structure of the IIIc domain of GB Virus B IRES Element
分子名称: 5'-R(*GP*GP*GP*CP*AP*AP*GP*CP*CP*C)-3'
著者Kaluarachchi, K, Thiviyanathan, V, Rijinbrand, R, Lemon, S.M, Gorenstein, D.G.
登録日2003-10-06
公開日2004-10-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Mutational and structural analysis of stem-loop IIIC of the hepatitis C virus and GB virus B internal ribosome entry sites.
J.Mol.Biol., 343, 2004
2L9I
DownloadVisualize
BU of 2l9i by Molmil
NMR structure of thymosin alpha-1
分子名称: Thymosin alpha-1
著者Elizondo-Riojas, M.A, Gorenstein, D.G, Volk, D.E.
登録日2011-02-11
公開日2011-12-28
実験手法SOLUTION NMR
主引用文献NMR structure of human thymosin alpha-1.
Biochem.Biophys.Res.Commun., 416, 2011
2JQM
DownloadVisualize
BU of 2jqm by Molmil
Yellow Fever Envelope Protein Domain III NMR Structure (S288-K398)
分子名称: Envelope protein E
著者Volk, D.E, Gandham, S.H, May, F.J, Anderson, A, Barrett, A.D, Gorenstein, D.G.
登録日2007-06-03
公開日2008-06-10
最終更新日2023-12-20
実験手法SOLUTION NMR
主引用文献Structure of yellow fever virus envelope protein domain III.
Virology, 394, 2009
2JV6
DownloadVisualize
BU of 2jv6 by Molmil
YF ED3 Protein NMR Structure
分子名称: Envelope protein E
著者Volk, D.E, Gandham, S.H.A, May, F.J, Anderson, A, Barrett, A.D.T, Gorenstein, D.G.
登録日2007-09-12
公開日2008-09-16
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Yellow Fever Virus Envelope Protein Domain III: A Convergence of Structure and Phylogenetics
To be Published
1IDV
DownloadVisualize
BU of 1idv by Molmil
NMR structure of HCV ires RNA domain IIIC
分子名称: HEPATITIS C IRES RNA DOMAIN IIIC
著者Kaluarachchi, K, Rijnbrand, R, Lemon, S.M, Gorenstein, D.G.
登録日2001-04-05
公開日2001-10-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Mutational and structural analysis of stem-loop IIIC of the hepatitis C virus and GB virus B internal ribosome entry sites
J.Mol.Biol., 343, 2004
1FYY
DownloadVisualize
BU of 1fyy by Molmil
HPRT GENE MUTATION HOTSPOT WITH A BPDE2(10R) ADDUCT
分子名称: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 5'-D(*TP*GP*CP*CP*CP*TP*TP*GP*AP*CP*TP*A)-3', HPRT DNA WITH BENZO[A]PYRENE-ADDUCTED DA7
著者Volk, D.E, Rice, J.S, Luxon, B.A, Yeh, H.J.C, Liang, C, Xie, G, Sayer, J.M, Jerina, D.M, Gorenstein, D.G.
登録日2000-10-03
公開日2000-12-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR evidence for syn-anti interconversion of a trans opened (10R)-dA adduct of benzo[a]pyrene (7S,8R)-diol (9R,10S)-epoxide in a DNA duplex.
Biochemistry, 39, 2000
2KD8
DownloadVisualize
BU of 2kd8 by Molmil
Solution structure of the stem-loop IIId of GBV-B IRES
分子名称: 5'-R(*GP*GP*AP*UP*GP*GP*UP*UP*GP*GP*GP*GP*UP*UP*AP*GP*CP*CP*AP*UP*CP*C)-3'
著者Thiviyanathan, V, Kulasegran Shylini, R, Gorenstein, D.G, kaluarachchi, K.
登録日2009-01-04
公開日2010-01-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the stem-loop IIId of GBV-B IRES
To be Published
1K9L
DownloadVisualize
BU of 1k9l by Molmil
Solution Structure of DNA TATGAGCGCTCATA
分子名称: 5'-D(*TP*AP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*TP*A)-3'
著者Kaluarachchi, K, Gorenstein, D.G, Luxon, B.A.
登録日2001-10-29
公開日2001-11-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献How Do Proteins Recognize DNA? Solution Structure and Local Conformational Dynamics of Lac Operators by 2D NMR
J.Biomol.Struct.Dyn., Conversation 11, 2000
1N8C
DownloadVisualize
BU of 1n8c by Molmil
Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex
分子名称: (9S,10R)-9-HYDROXY-7,8,9,10-TETRAHYDROBENZO[A]PYRENE, 5'-D(*CP*CP*TP*CP*GP*TP*GP*AP*CP*CP*G)-3', 5'-D(*CP*GP*GP*TP*CP*AP*CP*GP*AP*GP*G)-3'
著者Volk, D.E, Thiviyanathan, V, Rice, J.S, Luxon, B.A, Shah, J.H, Yagi, H, Sayer, J.M, Yeh, H.J.C, Jerina, D.M, Gorenstein, D.G.
登録日2002-11-20
公開日2003-02-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex
Biochemistry, 42, 2003
1K8L
DownloadVisualize
BU of 1k8l by Molmil
XBY6: An analog of CK14 containing 6 dithiophosphate groups
分子名称: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
著者Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
登録日2001-10-24
公開日2003-04-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
1K8J
DownloadVisualize
BU of 1k8j by Molmil
NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1
分子名称: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
著者Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
登録日2001-10-24
公開日2003-04-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
1K8N
DownloadVisualize
BU of 1k8n by Molmil
NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24
分子名称: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
著者Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
登録日2001-10-24
公開日2003-04-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
1K8S
DownloadVisualize
BU of 1k8s by Molmil
BULGED ADENOSINE IN AN RNA DUPLEX
分子名称: 5'-R(*GP*CP*GP*GP*CP*AP*CP*CP*UP*GP*CP*C)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*UP*GP*CP*CP*GP*C)-3'
著者Thiviyanathan, V, Guliaev, A.B, Leontis, N.B, Gorenstein, D.G.
登録日2001-10-25
公開日2001-11-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution conformation of a bulged adenosine base in an RNA duplex by relaxation matrix refinement.
J.Mol.Biol., 300, 2000
1N2W
DownloadVisualize
BU of 1n2w by Molmil
Solution Structure of 8OG:G mismatch containing duplex
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(8OG)P*GP*CP*G)-3'
著者Thiviyanathan, V, Somasunderam, A.D, Hazra, T.K, Mitra, S, Gorenstein, D.G.
登録日2002-10-24
公開日2002-11-13
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution Structure of a DNA Duplex Containing 8-Hydroxy-2'-Deoxyguanosine Opposite Deoxyguanosine
J.Mol.Biol., 325, 2003

 

12>

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon