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PDB: 116 results

6YC3
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BU of 6yc3 by Molmil
Crystal structure of the light-driven sodium pump KR2 in the pentameric form, pH 8.0
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ...
Authors:Kovalev, K, Gushchin, I, Gordeliy, V.
Deposit date:2020-03-18
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular mechanism of light-driven sodium pumping.
Nat Commun, 11, 2020
6YT4
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BU of 6yt4 by Molmil
Crystal structure of the N112A mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, OLEIC ACID, ...
Authors:Kovalev, K, Maliar, N, Astashkin, R, Gordeliy, V.
Deposit date:2020-04-23
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the N112A Mutant of the Light-Driven Sodium Pump KR2
Crystals, 2020
7AKW
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BU of 7akw by Molmil
Crystal structure of the viral rhodopsins chimera O1O2
Descriptor: EICOSANE, RETINAL, chimera of viral rhodopsins OLPVR1 and OLPVRII
Authors:Kovalev, K, Zabelskii, D, Alekseev, A, Astashkin, R, Gordeliy, V.
Deposit date:2020-10-02
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Viral rhodopsins 1 are an unique family of light-gated cation channels.
Nat Commun, 11, 2020
6YC0
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BU of 6yc0 by Molmil
Crystal structure of the steady-state-SMX activated state of the light-driven sodium pump KR2 in the pentameric form at room temperature, pH 8.0
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, GLYCEROL, ...
Authors:Kovalev, K, Gushchin, I, Gordeliy, V.
Deposit date:2020-03-18
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular mechanism of light-driven sodium pumping.
Nat Commun, 11, 2020
6YBY
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BU of 6yby by Molmil
Crystal structure of the D116N mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.6
Descriptor: EICOSANE, RETINAL, SODIUM ION, ...
Authors:Kovalev, K, Gushchin, I, Gordeliy, V.
Deposit date:2020-03-18
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular mechanism of light-driven sodium pumping.
Nat Commun, 11, 2020
6YC1
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BU of 6yc1 by Molmil
Crystal structure of the H30A mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ...
Authors:Kovalev, K, Gushchin, I, Gordeliy, V.
Deposit date:2020-03-18
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular mechanism of light-driven sodium pumping.
Nat Commun, 11, 2020
6YC4
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BU of 6yc4 by Molmil
Crystal structure of the steady-state activated state of the light-driven sodium pump KR2 in the pentameric form at room temperature, pH 8.0
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, GLYCEROL, ...
Authors:Kovalev, K, Gushchin, I, Gordeliy, V.
Deposit date:2020-03-18
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular mechanism of light-driven sodium pumping.
Nat Commun, 11, 2020
6YUE
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BU of 6yue by Molmil
Fragment of nitrate/nitrite sensor histidine kinase NarQ (R50S variant)
Descriptor: Nitrate/nitrite sensor protein NarQ
Authors:Gushchin, I, Melnikov, I, Polovinkin, V, Yuzhakova, A, Gordeliy, V.
Deposit date:2020-04-27
Release date:2020-05-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Sensor Histidine Kinase NarQ Activates via Helical Rotation, Diagonal Scissoring, and Eventually Piston-Like Shifts.
Int J Mol Sci, 21, 2020
7AHK
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BU of 7ahk by Molmil
Crystal structure of the outward-facing state of the substrate-free Na+-only bound glutamate transporter homolog GltPh
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, GLYCEROL, ...
Authors:Kovalev, K, Alleva, C, Astashkin, A, Machtens, J.-P, Fahlke, C, Gordeliy, V.
Deposit date:2020-09-24
Release date:2020-11-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Na + -dependent gate dynamics and electrostatic attraction ensure substrate coupling in glutamate transporters.
Sci Adv, 6, 2020
6SU3
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BU of 6su3 by Molmil
Crystal structure of the 48C12 heliorhodopsin in the violet form at pH 8.8
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 48C12 heliorhodopsin, EICOSANE, ...
Authors:Kovalev, K, Volkov, D, Astashkin, R, Alekseev, A, Gushchin, I, Gordeliy, V.
Deposit date:2019-09-12
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structural insights into the heliorhodopsin family.
Proc.Natl.Acad.Sci.USA, 117, 2020
7ZOW
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BU of 7zow by Molmil
Crystal structure of Synechocystis halorhodopsin (SyHR), Cl-pumping mode, O state
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, OLEIC ACID, ...
Authors:Kovalev, K, Bukhdruker, S, Astashkin, R, Vaganova, S, Gordeliy, V.
Deposit date:2022-04-26
Release date:2022-11-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into light-driven anion pumping in cyanobacteria.
Nat Commun, 13, 2022
7ZOY
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BU of 7zoy by Molmil
Crystal structure of Synechocystis halorhodopsin (SyHR), SO4-bound form, ground state
Descriptor: CHLORIDE ION, EICOSANE, GLYCEROL, ...
Authors:Kovalev, K, Bukhdruker, S, Astashkin, R, Vaganova, S, Gordeliy, V.
Deposit date:2022-04-26
Release date:2022-11-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural insights into light-driven anion pumping in cyanobacteria.
Nat Commun, 13, 2022
6SU4
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BU of 6su4 by Molmil
Crystal structure of the 48C12 heliorhodopsin in the blue form at pH 4.3
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 48C12 heliorhodopsin, ACETATE ION, ...
Authors:Kovalev, K, Volkov, D, Astashkin, R, Alekseev, A, Gushchin, I, Gordeliy, V.
Deposit date:2019-09-12
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structural insights into the heliorhodopsin family.
Proc.Natl.Acad.Sci.USA, 117, 2020
7AVN
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BU of 7avn by Molmil
Structure of marine actinobacteria clade rhodopsin (MacR) in orange form in P1 space group
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, ...
Authors:Gushchin, I, Polovinkin, V, Kovalev, K, Shevchenko, V, Gordeliy, V.
Deposit date:2020-11-05
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alternating Access Mechanism in a Minimalistic Light-Driven Proton Pump
To Be Published
7AVO
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BU of 7avo by Molmil
Structure of marine actinobacteria clade rhodopsin (MacR) in orange form in P1211 space group
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, ...
Authors:Gushchin, I, Polovinkin, V, Kovalev, K, Shevchenko, V, Gordeliy, V.
Deposit date:2020-11-05
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Alternating Access Mechanism in a Minimalistic Light-Driven Proton Pump
To Be Published
7AVP
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BU of 7avp by Molmil
Structure of marine actinobacteria clade rhodopsin (MacR) in violet form
Descriptor: Bacteriorhodopsin, EICOSANE
Authors:Gushchin, I, Polovinkin, V, Kovalev, K, Shevchenko, V, Gordeliy, V.
Deposit date:2020-11-05
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Alternating Access Mechanism in a Minimalistic Light-Driven Proton Pump
To Be Published

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PDB entries from 2024-07-17

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