1C2Q
 
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6ASF
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6AST
 | | NMR and Restrained Molecular Dynamics Determination of the Structure of an Aza-Benzimidazole Derivative Complex with the DNA Minor Groove of an -AAGATA Sequence | | Descriptor: | DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*TP*CP*TP*TP*GP*G)-3'), amino(4-{[(2-{4-[amino(iminio)methyl]phenyl}-3H-imidazo[4,5-b]pyridin-5-yl)oxy]methyl}phenyl)methaniminium | | Authors: | Harika, N.K, Germann, M.W, Wilson, W.D. | | Deposit date: | 2017-08-25 | | Release date: | 2018-01-31 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA Base Pair Sequences.
Chemistry, 23, 2017
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2AB3
 | | Solution structures and characterization of HIV RRE IIB RNA targeting zinc finger proteins | | Descriptor: | ZINC ION, ZNF29 | | Authors: | Mishra, S.H, Shelley, C.M, Darby, M.K, Germann, M.W. | | Deposit date: | 2005-07-14 | | Release date: | 2005-08-02 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structures and characterization of human immunodeficiency virus Rev responsive element IIB RNA targeting zinc finger proteins.
Biopolymers, 83, 2006
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2AB7
 | | Solution structures and characterization of HIV RRE IIB RNA targeting zinc finger proteins | | Descriptor: | ZINC ION, ZNF29G29R | | Authors: | Mishra, S.H, Shelley, C.M, Darby, M.K, Germann, M.W. | | Deposit date: | 2005-07-14 | | Release date: | 2005-08-02 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structures and characterization of human immunodeficiency virus Rev responsive element IIB RNA targeting zinc finger proteins.
Biopolymers, 83, 2006
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1BWT
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1BX5
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1S0T
 | | Solution structure of a DNA duplex containing an alpha-anomeric adenosine: insights into substrate recognition by endonuclease IV | | Descriptor: | 5'-D(*Cp*Gp*Tp*Cp*Gp*Tp*Gp*Gp*Ap*C)-3', 5'-D(*Gp*Tp*Cp*Cp*(A3A)p*Cp*Gp*Ap*Cp*G)-3' | | Authors: | Aramini, J.M, Cleaver, S.H, Pon, R.T, Cunningham, R.P, Germann, M.W. | | Deposit date: | 2004-01-04 | | Release date: | 2004-04-20 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution Structure of a DNA Duplex Containing an alpha-Anomeric Adenosine: Insights into Substrate Recognition by Endonuclease IV.
J.Mol.Biol., 338, 2004
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1S75
 | | SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING AN ALPHA-ANOMERIC ADENOSINE: INSIGHTS INTO SUBSTRATE RECOGNITION BY ENDONUCLEASE IV | | Descriptor: | 5'-D(*CP*GP*TP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*(A3A)P*CP*GP*AP*CP*G)-3' | | Authors: | Aramini, J.M, Cleaver, S.H, Pon, R.T, Cunningham, R.P, Germann, M.W. | | Deposit date: | 2004-01-28 | | Release date: | 2004-04-20 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution Structure of a DNA Duplex Containing an alpha-Anomeric Adenosine: Insights into Substrate Recognition by Endonuclease IV.
J.Mol.Biol., 338, 2004
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1S74
 | | SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING AN ALPHA-ANOMERIC ADENOSINE: INSIGHTS INTO SUBSTRATE RECOGNITION BY ENDONUCLEASE IV | | Descriptor: | 5'-D(*CP*GP*TP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*(A3A)P*CP*GP*AP*CP*G)-3' | | Authors: | Aramini, J.M, Cleaver, S.H, Pon, R.T, Cunningham, R.P, Germann, M.W. | | Deposit date: | 2004-01-28 | | Release date: | 2004-04-20 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution Structure of a DNA Duplex Containing an alpha-Anomeric Adenosine: Insights into Substrate Recognition by Endonuclease IV.
J.Mol.Biol., 338, 2004
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5KIF
 | | Structural impact of single ribonucleotides in DNA | | Descriptor: | DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') | | Authors: | Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-24 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem, 17, 2016
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5KI7
 | | Structural impact of single ribonucleotides in DNA | | Descriptor: | DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') | | Authors: | Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-24 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem, 17, 2016
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5KI5
 | | Structural impact of single ribonucleotides in DNA | | Descriptor: | DNA (5'-D(*CP*AP*GP*GP*CP*CP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*AP*GP*GP*CP*CP*TP*G)-3') | | Authors: | Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-24 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem, 17, 2016
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5KIE
 | | Structural impact of single ribonucleotides in DNA | | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*GP*GP*A)-R(P*G)-D(P*CP*TP*C)-3') | | Authors: | Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-24 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem, 17, 2016
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5KIB
 | | Structural impact of single ribonucleotides in DNA | | Descriptor: | DNA (5'-D(*CP*AP*GP*GP*CP*CP*TP*AP*A)-3'), DNA/RNA (5'-D(*TP*TP*AP*G)-R(P*G)-D(P*CP*CP*TP*G)-3') | | Authors: | Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-24 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem, 17, 2016
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5KIH
 | | Structural impact of single ribonucleotides in DNA | | Descriptor: | DNA (5'-D(*CP*AP*GP*GP*CP*CP*TP*AP*A)-3'), DNA/RNA (5'-D(*TP*TP*AP*G)-R(P*G)-D(P*CP*CP*TP*G)-3') | | Authors: | Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-24 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem, 17, 2016
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2LB4
 | | DNA / RNA Hybrid containing a central stereo specific Sp borano phosphate linkage | | Descriptor: | DNA_(5'-D(*AP*TP*GP*GP*TP*BGR*CP*TP*C)-3')_, RNA_(5'-R(*GP*AP*GP*CP*AP*CP*CP*AP*U)-3')_ | | Authors: | Johnson, C.N, Spring, A.M, Shaw, B.R, Germann, M.W. | | Deposit date: | 2011-03-22 | | Release date: | 2011-06-29 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural Basis of the RNase H1 Activity on Stereo Regular Borano Phosphonate DNA/RNA Hybrids.
Biochemistry, 50, 2011
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2LWG
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2LWH
 | | NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGATATATCC-3' in Complex with Netropsin | | Descriptor: | DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), NETROPSIN | | Authors: | Rettig, M, Germann, M.W, Wilson, W, Wang, S. | | Deposit date: | 2012-07-31 | | Release date: | 2013-01-23 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Molecular basis for sequence-dependent induced DNA bending.
Chembiochem, 14, 2013
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2N5O
 | | Universal Base oligonucleotide structure | | Descriptor: | DNA_(5'-D(*AP*TP*GP*GP*(4EN)P*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3') | | Authors: | Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W. | | Deposit date: | 2015-07-23 | | Release date: | 2016-09-07 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res., 44, 2016
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2LAR
 | | DNA / RNA Hybrid containing a central stereo specific Rp borano phosphate linkage | | Descriptor: | DNA_(5'-D(*AP*TP*GP*GP*TP*BGR*CP*TP*C)-3')_, RNA_(5'-R(*GP*AP*GP*CP*AP*CP*CP*AP*U)-3')_ | | Authors: | Johnson, C.N, Spring, A.M, Shaw, B.R, Germann, M.W. | | Deposit date: | 2011-03-18 | | Release date: | 2011-10-12 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structural basis of the RNase H1 activity on stereo regular borano phosphonate DNA/RNA hybrids.
Biochemistry, 50, 2011
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2LIB
 | | DNA sequence context conceals alpha anomeric lesion | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*(A3A)P*GP*GP*AP*CP*G)-3') | | Authors: | Johnson, C.N, Spring, A.M, Cunningham, R.P, Germann, M.W. | | Deposit date: | 2011-08-27 | | Release date: | 2012-08-08 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | DNA sequence context conceals alpha-anomeric lesions.
J.Mol.Biol., 416, 2012
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2N5P
 | | Universal base control oligonucleotide structure | | Descriptor: | DNA_(5'-D(*AP*TP*GP*GP*AP*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3') | | Authors: | Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W. | | Deposit date: | 2015-07-23 | | Release date: | 2016-09-07 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res., 44, 2016
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2KD4
 | | Solution structure and thermodynamics of 2',5' RNA intercalation | | Descriptor: | 5'-R(*GP*CP*CP*GP*CP*GP*GP*C)-2', PROFLAVIN | | Authors: | Horowitz, E.D, Lilavivat, S, Holladay, B.W, Germann, M.W, Hud, N.V. | | Deposit date: | 2009-01-02 | | Release date: | 2009-04-07 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structure and thermodynamics of 2',5' RNA intercalation.
J.Am.Chem.Soc., 131, 2009
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