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PDB: 213 results

3UNV
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BU of 3unv by Molmil
Pantoea agglomerans Phenylalanine Aminomutase
Descriptor: (3S)-3-amino-3-phenylpropanoic acid, 1,2-ETHANEDIOL, AdmH, ...
Authors:Geiger, J, Strom, S.
Deposit date:2011-11-16
Release date:2012-02-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Insights into the mechanistic pathway of the Pantoea agglomerans phenylalanine aminomutase.
Angew.Chem.Int.Ed.Engl., 51, 2012
4EAT
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BU of 4eat by Molmil
Crystal structure of a benzoate coenzyme A ligase
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, Benzoate-coenzyme A ligase, ...
Authors:Geiger, J, Strom, S.
Deposit date:2012-03-22
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity.
Biochemistry, 54, 2015
6ON7
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BU of 6on7 by Molmil
Crystal Structure of Apo Domain-Swapped Dimer Q108K:T51D:A28C:L36C Mutant of Human Cellular Retinol Binding Protein II
Descriptor: Retinol-binding protein 2
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2019-04-20
Release date:2019-10-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.981 Å)
Cite:Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.
J.Am.Chem.Soc., 141, 2019
3GUH
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BU of 3guh by Molmil
Crystal Structure of Wild-type E.coli GS in complex with ADP and DGM
Descriptor: (2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, 1,5-anhydro-D-glucitol, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
Authors:Sheng, F, Geiger, J.
Deposit date:2009-03-30
Release date:2009-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:The Crystal Structures of the Open and Catalytically Competent Closed Conformation of Escherichia coli Glycogen Synthase.
J.Biol.Chem., 284, 2009
1M7X
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BU of 1m7x by Molmil
The X-ray Crystallographic Structure of Branching Enzyme
Descriptor: 1,4-alpha-glucan Branching Enzyme
Authors:Abad, M.C, Binderup, K, Rios-Steiner, J, Arni, R.K, Preiss, J, Geiger, J.H.
Deposit date:2002-07-23
Release date:2002-09-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The X-ray crystallographic structure of Escherichia coli branching enzyme
J.Biol.Chem., 277, 2002
8DN1
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BU of 8dn1 by Molmil
Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V at pH 7.2
Descriptor: (2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form, GLYCEROL, ...
Authors:Bingham, C.R, Borhan, B, Geiger, J.H.
Deposit date:2022-07-10
Release date:2023-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Light controlled reversible Michael addition of cysteine: a new tool for dynamic site-specific labeling of proteins.
Analyst, 148, 2023
6MCU
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BU of 6mcu by Molmil
Crystal structure of the holo retinal-bound domain-swapped dimer Q108K:T51D:A28H mutant of human Cellular Retinol Binding Protein II
Descriptor: GLYCEROL, RETINAL, Retinol-binding protein 2
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2018-09-02
Release date:2019-10-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.572 Å)
Cite:Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.
J.Am.Chem.Soc., 141, 2019
8SDB
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BU of 8sdb by Molmil
Crystal Structure of E.Coli Branching Enzyme in complex with malto-octose
Descriptor: 1,4-alpha-glucan branching enzyme GlgB, alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Bingham, C.R, Nayebi, H, Fawaz, R, Geiger, J.H.
Deposit date:2023-04-06
Release date:2023-07-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structure of Maltooctaose-Bound Escherichia coli Branching Enzyme Suggests a Mechanism for Donor Chain Specificity.
Molecules, 28, 2023
3I17
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BU of 3i17 by Molmil
Crystal structure of the apo R132K:L121E mutant of cellular retinoic acid-binding protein II at 1.68 angstrom resolution
Descriptor: Cellular retinoic acid-binding protein 2
Authors:Jia, X, Watson, C.T, Geiger, J.H.
Deposit date:2009-06-25
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Elucidating the exact role of engineered CRABPII residues for the formation of a retinal protonated Schiff base.
Proteins, 77, 2009
4YGH
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BU of 4ygh by Molmil
Crystal Structure of R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 2.1 Angstrom resolution - UV irradiated crystal - 2nd cycle
Descriptor: Cellular retinoic acid-binding protein 2, RETINAL
Authors:Nosrati, M, Geiger, J.H.
Deposit date:2015-02-26
Release date:2016-03-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution.
J.Am.Chem.Soc., 138, 2016
9D8M
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BU of 9d8m by Molmil
Q108K:K40L:T51V:T53C:R58W:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V fluorophore in the dark state at pH 4
Descriptor: (4aP)-N,N-diethyl-9,9-dimethyl-7-[(1E)-prop-1-en-1-yl]-9H-fluoren-2-amine, ACETIC ACID, Retinol-binding protein 2
Authors:Ehyaei, N, Bingham, C, Geiger, J.H.
Deposit date:2024-08-19
Release date:2025-02-12
Method:X-RAY DIFFRACTION (1.201 Å)
Cite:Photoswitching fluorescence via a novel Trp-flap mechanism
To Be Published
9D8N
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BU of 9d8n by Molmil
Q108K:K40L:T51V:T53C:R58W:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 4
Descriptor: (4aP)-N,N-diethyl-9,9-dimethyl-7-[(1E)-prop-1-en-1-yl]-9H-fluoren-2-amine, ACETIC ACID, GLYCEROL, ...
Authors:Bingham, C, Ehyaei, N, Geiger, J.H.
Deposit date:2024-08-19
Release date:2025-02-12
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:Photoswitching fluorescence via a novel Trp-flap mechanism
To Be Published
9DDU
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BU of 9ddu by Molmil
Q108K:K40L:T51V:T53C:R58Y:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 3.0
Descriptor: (4aP)-N,N-diethyl-9,9-dimethyl-7-[(1E)-prop-1-en-1-yl]-9H-fluoren-2-amine, ACETIC ACID, GLYCEROL, ...
Authors:Bingham, C, Geiger, J.H.
Deposit date:2024-08-28
Release date:2025-02-12
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Photoswitching fluorescence via a novel Trp-flap mechanism
To Be Published
9DF1
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BU of 9df1 by Molmil
Q108K:K40L:T51V:T53C:R58Y:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 7.6
Descriptor: (4aP)-N,N-diethyl-9,9-dimethyl-7-[(1E)-prop-1-en-1-yl]-9H-fluoren-2-amine, ACETIC ACID, GLYCEROL, ...
Authors:Bingham, C, Geiger, J.H.
Deposit date:2024-08-29
Release date:2025-02-12
Method:X-RAY DIFFRACTION (1.524 Å)
Cite:Photoswitching fluorescence via a novel Trp-flap mechanism
To Be Published
5U6G
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BU of 5u6g by Molmil
Crystal Structure of the holo Domain-Swapped Dimer mutant Q108K:K40D Human Cellular Retinol Binding Protein II bound with all trans retinal
Descriptor: RETINAL, Retinol-binding protein 2
Authors:Assar, Z, Geiger, J.H.
Deposit date:2016-12-08
Release date:2017-10-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the holo Domain-Swapped Dimer mutant Q108K:K40D Human Cellular Retinol Binding Protein II bound with all trans retinal
To Be Published
1RM0
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BU of 1rm0 by Molmil
Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces cerevisiae In Complex With NAD+ and 2-deoxy-D-glucitol 6-(E)-vinylhomophosphonate
Descriptor: (3,4,5,7-TETRAHYDROXY-HEPT-1-ENYL)-PHOSPHONIC ACID, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, MANGANESE (II) ION, ...
Authors:Jin, X, Foley, K.M, Geiger, J.H.
Deposit date:2003-11-26
Release date:2004-05-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of the 1L-myo-inositol-1-phosphate synthase-NAD+-2-deoxy-D-glucitol 6-(E)-vinylhomophosphonate complex demands a revision of the enzyme mechanism.
J.Biol.Chem., 279, 2004
1RM1
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BU of 1rm1 by Molmil
Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Descriptor: 5'-D(*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*AP*TP*AP*AP*AP*AP*CP*G)-3', 5'-D(P*CP*GP*TP*TP*TP*TP*AP*TP*AP*TP*CP*GP*AP*TP*CP*GP*AP*T)-3', TATA-box binding protein, ...
Authors:Jin, X, Gewirth, D.T, Geiger, J.H.
Deposit date:2003-11-26
Release date:2005-07-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High Resolution Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
TO BE PUBLISHED
2R4T
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BU of 2r4t by Molmil
Crystal Structure of Wild-type E.coli GS in Complex with ADP and Glucose(wtGSc)
Descriptor: (2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Sheng, F, Geiger, J.
Deposit date:2007-09-01
Release date:2008-09-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.258 Å)
Cite:The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase.
J.Biol.Chem., 284, 2009
2QZS
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BU of 2qzs by Molmil
Crystal Structure of Wild-type E.coli GS in complex with ADP and Glucose(wtGSb)
Descriptor: (2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, ADENOSINE-5'-DIPHOSPHATE, alpha-D-glucopyranose, ...
Authors:Sheng, F, Geiger, J.
Deposit date:2007-08-17
Release date:2008-09-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Crystal Structures of the Open and Catalytically Competent Closed Conformation of Escherichia coli Glycogen Synthase.
J.Biol.Chem., 284, 2009
2R4U
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BU of 2r4u by Molmil
Crystal Structure of Wild-type E.coli GS in complex with ADP and Glucose(wtGSd)
Descriptor: (2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Sheng, F, Geiger, J.
Deposit date:2007-09-01
Release date:2008-09-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.367 Å)
Cite:The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase.
J.Biol.Chem., 284, 2009
8VZZ
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BU of 8vzz by Molmil
Q108K:K40L:T51V:T53S:Y19W:R58W mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:Nosssoni, Z, Bingham, C.R, Geiger, J.H, Borhan, B.
Deposit date:2024-02-13
Release date:2024-04-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Regulation of Absorption and Emission in a Protein/Fluorophore Complex.
Acs Chem.Biol., 19, 2024
8VZX
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BU of 8vzx by Molmil
Q108K:K40L:T53A:R58F mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor: (2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:Nossoni, Z, Bingham, C.R, Geiger, J.H.
Deposit date:2024-02-13
Release date:2024-04-03
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Regulation of Absorption and Emission in a Protein/Fluorophore Complex.
Acs Chem.Biol., 19, 2024
6WP0
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BU of 6wp0 by Molmil
The Crystal Structure of Domain-Swapped Trimer Q108K:T51D variant of HCRBPII
Descriptor: ACETATE ION, GLYCEROL, Retinol-binding protein 2
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2020-04-26
Release date:2020-08-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Human Cellular Retinol Binding Protein II Forms a Domain-Swapped Trimer Representing a Novel Fold and a New Template for Protein Engineering.
Chembiochem, 21, 2020
1JKI
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BU of 1jki by Molmil
myo-Inositol-1-phosphate Synthase Complexed with an Inhibitor, 2-deoxy-glucitol-6-phosphate
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-DEOXY-GLUCITOL-6-PHOSPHATE, AMMONIUM ION, ...
Authors:Stein, A.J, Geiger, J.H.
Deposit date:2001-07-12
Release date:2002-04-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure and mechanism of 1-L-myo-inositol- 1-phosphate synthase
J.Biol.Chem., 277, 2002
8D6H
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BU of 8d6h by Molmil
Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V after UV irradiation
Descriptor: (2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form, ACETATE ION, ...
Authors:Bingham, C.R, Geiger, J.H, Borhan, B.
Deposit date:2022-06-06
Release date:2023-02-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Light controlled reversible Michael addition of cysteine: a new tool for dynamic site-specific labeling of proteins.
Analyst, 148, 2023

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