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PDB: 700 results

7CDX
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BU of 7cdx by Molmil
Complex STRUCTURE OF A NOVEL VIRULENCE REGULATION FACTOR SghR with its effector sucrose
Descriptor: LacI-type transcription factor, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Ye, F.Z, Wang, C, Yan, X.F, Zhang, L.H, Gao, Y.G.
Deposit date:2020-06-20
Release date:2020-07-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Structural basis of a novel repressor, SghR, controllingAgrobacteriuminfection by cross-talking to plants.
J.Biol.Chem., 295, 2020
5YDP
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BU of 5ydp by Molmil
Crystal Structure of TetR Family Repressor AlkX from Dietzia sp. Strain DQ12-45-1b Implicated in Biodegradation of n-Alkanes
Descriptor: TetR transcriptional regulatory protein
Authors:Zheng, H, Gao, Y, Liang, J.L.
Deposit date:2017-09-14
Release date:2017-10-04
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:Crystal Structure of TetR Family Repressor AlkX from Dietzia sp. Strain DQ12-45-1b Implicated in Biodegradation ofn-Alkanes.
Appl. Environ. Microbiol., 83, 2017
8IKA
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BU of 8ika by Molmil
Cryo-EM structure of the encapsulin shell from Mycobacterium tuberculosis
Descriptor: Type 1 encapsulin shell protein
Authors:Du, Z, Lai, Y, Gao, Y, Rao, Z, Gong, H.
Deposit date:2023-02-28
Release date:2023-03-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structure of mycobacterium tuberculosis encapsulin
To Be Published
8I8C
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BU of 8i8c by Molmil
Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: Occlusion-derived virus envelope/capsid protein, P40
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (4.93 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
7D32
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BU of 7d32 by Molmil
The TBA-Pb2+ complex in P41212 space group
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION
Authors:Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H.
Deposit date:2020-09-18
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Structure-guided development of Pb 2+ -binding DNA aptamers.
Sci Rep, 12, 2022
7D31
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BU of 7d31 by Molmil
The TBA-Pb2+ complex in P41212 space group
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION
Authors:Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H.
Deposit date:2020-09-18
Release date:2021-09-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.396 Å)
Cite:Structure-guided development of Pb 2+ -binding DNA aptamers.
Sci Rep, 12, 2022
6IEJ
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BU of 6iej by Molmil
The C2 domain of cytosolic phospholipase A2 alpha bound to phosphatidylcholine
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, CALCIUM ION, Cytosolic phospholipase A2, ...
Authors:Hirano, Y, Gao, Y.G, Stephenson, D.J, Vu, N.T, Malinina, L, Chalfant, C.E, Patel, D.J, Brown, R.E.
Deposit date:2018-09-14
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Structural basis of phosphatidylcholine recognition by the C2-domain of cytosolic phospholipase A2alpha.
Elife, 8, 2019
7FBT
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BU of 7fbt by Molmil
Crystal structure of chitinase (RmChi1) from Rhizomucor miehei (sp p32 2 1, MR)
Descriptor: Chitinase, MAGNESIUM ION
Authors:Jiang, Z.Q, Hu, S.Q, Zhu, Q, Liu, Y.C, Ma, J.W, Yan, Q.J, Gao, Y.G, Yang, S.Q.
Deposit date:2021-07-12
Release date:2021-08-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a chitinase (RmChiA) from the thermophilic fungus Rhizomucor miehei with a real active site tunnel.
Biochim Biophys Acta Proteins Proteom, 1869, 2021
8H7Z
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BU of 8h7z by Molmil
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Descriptor: BA7535 fab, Spike glycoprotein
Authors:Liu, Z, Yan, A, Gao, Y.
Deposit date:2022-10-21
Release date:2023-08-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Identification of a highly conserved neutralizing epitope within the RBD region of diverse SARS-CoV-2 variants.
Nat Commun, 15, 2024
8I8B
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BU of 8i8b by Molmil
Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: 38K, AcOrf-109 peptide, Early 49 Daa protein, ...
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.31 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
7D6V
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BU of 7d6v by Molmil
Mycobacterium smegmatis Sdh1 in complex with UQ1
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Zhou, X, Gao, Y, Wang, Q, Gong, H, Rao, Z.
Deposit date:2020-10-02
Release date:2021-04-07
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Architecture of the mycobacterial succinate dehydrogenase with a membrane-embedded Rieske FeS cluster.
Proc.Natl.Acad.Sci.USA, 118, 2021
7D6X
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BU of 7d6x by Molmil
Mycobacterium smegmatis Sdh1 complex in the apo form
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Zhou, X, Gao, Y, Wang, Q, Gong, H, Rao, Z.
Deposit date:2020-10-02
Release date:2021-04-07
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Architecture of the mycobacterial succinate dehydrogenase with a membrane-embedded Rieske FeS cluster.
Proc.Natl.Acad.Sci.USA, 118, 2021
7D33
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BU of 7d33 by Molmil
The Pb2+ complexed structure of TBA G8C mutant
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*CP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION
Authors:Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H.
Deposit date:2020-09-18
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.117 Å)
Cite:Structure-guided development of Pb 2+ -binding DNA aptamers.
Sci Rep, 12, 2022
6ABS
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BU of 6abs by Molmil
Actin interacting protein 5 (Aip5, mutant)
Descriptor: Actin binding protein, PENTAETHYLENE GLYCOL, TRIETHYLENE GLYCOL
Authors:Sun, J, Ying, X, Toh, J, Hong, W, Miao, Y, Gao, Y.G.
Deposit date:2018-07-23
Release date:2019-11-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Polarisome scaffolder Spa2-mediated macromolecular condensation of Aip5 for actin polymerization.
Nat Commun, 10, 2019
7CE1
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BU of 7ce1 by Molmil
Complex STRUCTURE OF TRANSCRIPTION FACTOR SghR with its COGNATE DNA
Descriptor: LacI-type transcription factor, promoter DNA
Authors:Ye, F.Z, Wang, C, Yan, X.F, Zhang, L.H, Gao, Y.G.
Deposit date:2020-06-21
Release date:2020-07-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of a novel repressor, SghR, controllingAgrobacteriuminfection by cross-talking to plants.
J.Biol.Chem., 295, 2020
7F3U
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BU of 7f3u by Molmil
Cryo-EM structure of human TMEM120A in the CoASH-free state
Descriptor: Transmembrane protein 120A
Authors:Rong, Y, Gao, Y.W, Song, D.F, Zhao, Y, Liu, Z.F.
Deposit date:2021-06-17
Release date:2021-06-30
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4 Å)
Cite:TMEM120A contains a specific coenzyme A-binding site and might not mediate poking- or stretch-induced channel activities in cells.
Elife, 10, 2021
8GS8
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BU of 8gs8 by Molmil
cryo-EM structure of the human respiratory complex II
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Du, Z, Zhou, X, Lai, Y, Xu, J, Zhang, Y, Zhou, S, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-09-05
Release date:2023-05-10
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structure of the human respiratory complex II.
Proc.Natl.Acad.Sci.USA, 120, 2023
5Y4R
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BU of 5y4r by Molmil
Structure of a methyltransferase complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Chemotaxis protein methyltransferase 1, Cyclic diguanosine monophosphate-binding protein PA4608, ...
Authors:Yan, X, Xin, L, Tan, Y.J, Jin, S, Liang, Z.X, Gao, Y.G.
Deposit date:2017-08-04
Release date:2017-11-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Structural analyses unravel the molecular mechanism of cyclic di-GMP regulation of bacterial chemotaxis via a PilZ adaptor protein.
J. Biol. Chem., 293, 2018
8H9I
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BU of 8h9i by Molmil
Human ATP synthase F1 domain, state2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit O, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023
8H9Q
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BU of 8h9q by Molmil
Human ATP synthase state 3b subregion 3
Descriptor: ATP synthase F(0) complex subunit B1, mitochondrial, ATP synthase F(0) complex subunit C1, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023
8H9R
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BU of 8h9r by Molmil
Human ATP synthase state 3b subregion 2
Descriptor: ATP synthase F(0) complex subunit B1, mitochondrial, ATP synthase subunit d, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.97 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023
8H9P
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BU of 8h9p by Molmil
Human ATP synthase F1 domain, state 3b
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit O, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023
8H9U
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BU of 8h9u by Molmil
Human ATP synthase state 3a (combined)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase F(0) complex subunit B1, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023
8H9V
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BU of 8h9v by Molmil
Human ATP synthase state 3b (combined)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase F(0) complex subunit B1, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023
8H9S
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BU of 8h9s by Molmil
Human ATP synthase state 1 (combined)
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z.
Deposit date:2022-10-25
Release date:2023-05-31
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Structure of the human ATP synthase.
Mol.Cell, 83, 2023

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