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PDB: 42 件
6D1V
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BU of 6d1v by Molmil
Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA
分子名称: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ...
著者Gao, A, Serganov, A.
登録日2018-04-12
公開日2018-05-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6D1Q
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BU of 6d1q by Molmil
Crystal structure of E. coli RppH-DapF complex, monomer
分子名称: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ...
著者Gao, A, Serganov, A.
登録日2018-04-12
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6D13
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BU of 6d13 by Molmil
Crystal structure of E.coli RppH-DapF complex
分子名称: CHLORIDE ION, Diaminopimelate epimerase, IODIDE ION, ...
著者Gao, A, Serganov, A.
登録日2018-04-11
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6VCN
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BU of 6vcn by Molmil
Crystal structure of E.coli RppH in complex with ppcpG
分子名称: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, RNA pyrophosphohydrolase, SULFATE ION
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCQ
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BU of 6vcq by Molmil
Crystal structure of E.coli RppH in complex with GTP
分子名称: GUANOSINE-5'-TRIPHOSPHATE, RNA pyrophosphohydrolase, SULFATE ION
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCK
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BU of 6vck by Molmil
Crystal structure of E.coli RppH-DapF in complex with GDP, Mg2+ and F-
分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ...
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCP
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BU of 6vcp by Molmil
Crystal structure of E.coli RppH in complex with UTP
分子名称: RNA pyrophosphohydrolase, URIDINE 5'-TRIPHOSPHATE
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCL
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BU of 6vcl by Molmil
Crystal structure of E.coli RppH-DapF in complex with pppGpp, Mg2+ and F-
分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ...
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCR
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BU of 6vcr by Molmil
Crystal structure of E.coli RppH in complex with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, PYROPHOSPHATE, RNA pyrophosphohydrolase, ...
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCM
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BU of 6vcm by Molmil
Crystal structure of E.coli RppH-DapF in complex with GTP, Mg2+ and F-
分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ...
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
6VCO
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BU of 6vco by Molmil
Crystal structure of E.coli RppH in complex with ppcpA
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA pyrophosphohydrolase
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
8WKT
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BU of 8wkt by Molmil
Cryo-EM structure of DSR2-DSAD1 complex
分子名称: SIR2-like domain-containing protein, SPbeta prophage-derived uncharacterized protein YotI
著者Gao, A, Huang, J, Zhu, K.
登録日2023-09-28
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.86 Å)
主引用文献Molecular basis of bacterial DSR2 anti-phage defense and viral immune evasion.
Nat Commun, 15, 2024
8WKX
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BU of 8wkx by Molmil
Cryo-EM structure of DSR2
分子名称: SIR2-like domain-containing protein
著者Gao, A, Huang, J, Zhu, K.
登録日2023-09-28
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (4.15 Å)
主引用文献Molecular basis of bacterial DSR2 anti-phage defense and viral immune evasion.
Nat Commun, 15, 2024
8WKS
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BU of 8wks by Molmil
Cryo-EM structure of DSR2-TUBE complex
分子名称: SIR2-like domain-containing protein, TUBE
著者Gao, A, Huang, J, Zhu, K.
登録日2023-09-28
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Molecular basis of bacterial DSR2 anti-phage defense and viral immune evasion.
Nat Commun, 15, 2024
4QK9
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BU of 4qk9 by Molmil
Thermovirga lienii c-di-AMP riboswitch
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, C-di-AMP riboswitch, MAGNESIUM ION
著者Gao, A, Serganov, A.
登録日2014-06-05
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat.Chem.Biol., 10, 2014
4QK8
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BU of 4qk8 by Molmil
Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, C-di-AMP riboswitch, MAGNESIUM ION, ...
著者Gao, A, Serganov, A.
登録日2014-06-05
公開日2014-08-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat.Chem.Biol., 10, 2014
4QKA
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BU of 4qka by Molmil
c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, C-di-AMP riboswitch, IRIDIUM HEXAMMINE ION, ...
著者Gao, A, Serganov, A.
登録日2014-06-05
公開日2014-08-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat.Chem.Biol., 10, 2014
3ECR
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BU of 3ecr by Molmil
Structure of human porphobilinogen deaminase
分子名称: 3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid, Porphobilinogen deaminase
著者Song, G, Li, Y, Cheng, C, Zhao, Y, Gao, A, Zhang, R, Joachimiak, A, Shaw, N, Liu, Z.J.
登録日2008-09-01
公開日2008-09-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.182 Å)
主引用文献Structural insight into acute intermittent porphyria.
Faseb J., 23, 2009
6J9M
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BU of 6j9m by Molmil
NmeBH+AcrIIC2
分子名称: AcrIIC2, CRISPR-associated endonuclease Cas9
著者Zhu, Y.L, Gao, A, Serganov, A, Gao, P.
登録日2019-01-23
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.394 Å)
主引用文献Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.
Mol. Cell, 74, 2019
6J9K
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BU of 6j9k by Molmil
Apo-AcrIIC2
分子名称: AcrIIC2, MAGNESIUM ION
著者Zhu, Y.L, Gao, A, Serganov, A, Gao, P.
登録日2019-01-23
公開日2019-03-06
最終更新日2022-03-23
実験手法X-RAY DIFFRACTION (2.234 Å)
主引用文献Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.
Mol. Cell, 74, 2019
6J9L
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BU of 6j9l by Molmil
FnoBH+AcrIIC2
分子名称: AcrIIC2, HNH endonuclease family protein
著者Zhu, Y.L, Gao, A, Serganov, A, Gao, P.
登録日2019-01-23
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.
Mol. Cell, 74, 2019
6J9N
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BU of 6j9n by Molmil
NmeHNH+AcrIIC3
分子名称: AcrIIC3, CRISPR-associated endonuclease Cas9
著者Zhu, Y.L, Gao, A, Serganov, A, Gao, P.
登録日2019-01-23
公開日2019-03-06
最終更新日2022-03-23
実験手法X-RAY DIFFRACTION (2.606 Å)
主引用文献Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.
Mol. Cell, 74, 2019
5ZQ4
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BU of 5zq4 by Molmil
PDE-Ubi-ADPr
分子名称: ADENOSINE MONOPHOSPHATE, SidE, ubiquitin
著者Wang, Y, Gao, A, Gao, P.
登録日2018-04-17
公開日2018-05-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.217 Å)
主引用文献Structural Insights into Non-canonical Ubiquitination Catalyzed by SidE.
Cell, 173, 2018
5ZQ2
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BU of 5zq2 by Molmil
SidE apo form
分子名称: SidE
著者Wang, Y, Gao, A, Gao, P.
登録日2018-04-17
公開日2018-05-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.704 Å)
主引用文献Structural Insights into Non-canonical Ubiquitination Catalyzed by SidE.
Cell, 173, 2018
5ZQ3
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BU of 5zq3 by Molmil
PDE-Ubiquitin
分子名称: SidE, Ubiquitin
著者Wang, Y, Gao, A, Gao, P.
登録日2018-04-17
公開日2018-05-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.182 Å)
主引用文献Structural Insights into Non-canonical Ubiquitination Catalyzed by SidE.
Cell, 173, 2018

 

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