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PDB: 520 results

5WSP
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BU of 5wsp by Molmil
Crystal structure of DNA3 duplex
Descriptor: DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3'), STRONTIUM ION
Authors:Gan, J.H, Liu, H.H.
Deposit date:2016-12-08
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res., 45, 2017
5WSR
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BU of 5wsr by Molmil
Crystal structure of T-Hg-T pair containing DNA duplex
Descriptor: DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3'), MERCURY (II) ION
Authors:Gan, J.H, Liu, H.H.
Deposit date:2016-12-08
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res., 45, 2017
8CMS
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BU of 8cms by Molmil
OTUB2 in covalent complex with LN5P45
Descriptor: (1~{S},2~{S})-~{N}'-ethanoyl-2-(3-methylphenyl)cyclopropane-1-carbohydrazide, Ubiquitin thioesterase OTUB2
Authors:Gan, J, de Vries, J.
Deposit date:2023-02-21
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Cellular Validation of a Chemically Improved Inhibitor Identifies Monoubiquitination on OTUB2.
Acs Chem.Biol., 18, 2023
7DLZ
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BU of 7dlz by Molmil
Crystal Structure of Methyltransferase Ribozyme
Descriptor: RNA (45-MER), U1 small nuclear ribonucleoprotein A
Authors:Gan, J.H, Gao, Y.Q, Jiang, H.Y, Chen, D.R, Murchie, A.I.H.
Deposit date:2020-11-30
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:The identification and characterization of a selected SAM-dependent methyltransferase ribozyme that is present in natural sequences
Nat Catal, 4, 2021
2G1J
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BU of 2g1j by Molmil
Crystal structure of Mycobacterium tuberculosis Shikimate Kinase at 2.0 angstrom resolution
Descriptor: SULFATE ION, Shikimate kinase
Authors:Gan, J, Gu, Y, Li, Y, Yan, H, Ji, X.
Deposit date:2006-02-14
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue.
Biochemistry, 45, 2006
8XIF
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BU of 8xif by Molmil
The crystal structure of the AEP domain of VACV D5
Descriptor: MAGNESIUM ION, PYROPHOSPHATE, Uncoating factor OPG117
Authors:Gan, J, Zhang, W.
Deposit date:2023-12-19
Release date:2024-05-01
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Structural and functional insights into the helicase protein E5 of Mpox virus.
Cell Discov, 10, 2024
8XIG
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BU of 8xig by Molmil
The crystal structure of the AEP domain of MPXV E5
Descriptor: MAGNESIUM ION, PYROPHOSPHATE, Uncoating factor OPG117
Authors:Gan, J, Zhang, W.
Deposit date:2023-12-19
Release date:2024-05-01
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and functional insights into the helicase protein E5 of Mpox virus.
Cell Discov, 10, 2024
8GZJ
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BU of 8gzj by Molmil
Crystal structure of Cd2+-bound DNA aptamer
Descriptor: 25-mer DNA, BARIUM ION, CADMIUM ION
Authors:Gan, J.H, Liu, H.H, Gao, Y.Q.
Deposit date:2022-09-27
Release date:2023-08-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Crystal structures and identification of novel Cd2+-specific DNA aptamer.
Nucleic Acids Res., 51, 2023
8GZL
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BU of 8gzl by Molmil
Crystal structure of Cd2+-bound DNA aptamer
Descriptor: 25-mer DNA, BARIUM ION, CADMIUM ION
Authors:Gan, J.H, Liu, H.H, Gao, Y.Q.
Deposit date:2022-09-27
Release date:2023-08-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures and identification of novel Cd2+-specific DNA aptamer.
Nucleic Acids Res., 51, 2023
8GZM
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BU of 8gzm by Molmil
Crystal structure of Cd2+-bound DNA aptamer T22C mutant
Descriptor: 25-mer DNA, BARIUM ION, CADMIUM ION
Authors:Gan, J.H, Liu, H.H, Gao, Y.Q.
Deposit date:2022-09-27
Release date:2023-08-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structures and identification of novel Cd2+-specific DNA aptamer.
Nucleic Acids Res., 51, 2023
8GZK
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BU of 8gzk by Molmil
Crystal structure of Cd2+-bound DNA aptamer T10A mutant
Descriptor: 25-mer DNA, BARIUM ION, CADMIUM ION
Authors:Gan, J.H, Liu, H.H, Gao, Y.Q.
Deposit date:2022-09-27
Release date:2023-08-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Crystal structures and identification of novel Cd2+-specific DNA aptamer.
Nucleic Acids Res., 51, 2023
7CPW
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BU of 7cpw by Molmil
Complex structure of DNA with self-catalyzed depurination activity
Descriptor: DNA (5'-D(*CP*GP*TP*GP*AP*TP*CP*GP*GP*AP*GP*AP*CP*GP*AP*TP*CP*AP*CP*G)-3'), DNA polymerase beta-like protein
Authors:Gan, J.H.
Deposit date:2020-08-08
Release date:2021-08-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.849 Å)
Cite:Crystallization and Structural Determination of 8-17 DNAzyme.
Methods Mol.Biol., 2439, 2022
5JRE
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BU of 5jre by Molmil
Crystal structure of NeC3PO in complex with ssDNA.
Descriptor: 9-METHYL-9H-PURIN-6-AMINE, ADENINE, NEQ131, ...
Authors:Gan, J, Zhang, J.
Deposit date:2016-05-06
Release date:2016-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for single-stranded RNA recognition and cleavage by C3PO
Nucleic Acids Res., 44, 2016
2NUF
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BU of 2nuf by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.5-Angstrom Resolution
Descriptor: 28-MER, MAGNESIUM ION, Ribonuclease III
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
2NUG
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BU of 2nug by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom Resolution
Descriptor: 5'-R(P*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*G)-3', 5'-R(P*AP*GP*UP*GP*GP*CP*CP*UP*UP*GP*C)-3', MAGNESIUM ION, ...
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
2HK9
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BU of 2hk9 by Molmil
Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Gan, J.H, Prabakaran, P, Gu, Y.J, Andrykovitch, M, Li, Y, Liu, H.H, Yan, H, Ji, X.
Deposit date:2006-07-03
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism.
Biochemistry, 46, 2007
2HK7
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BU of 2hk7 by Molmil
Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with mercury at 2.5 angstrom resolution
Descriptor: MERCURY (II) ION, Shikimate dehydrogenase
Authors:Gan, J.H, Prabakaran, P, Gu, Y.J, Andrykovitch, M, Li, Y, Liu, H.H, Yan, H, Ji, X.
Deposit date:2006-07-03
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism.
Biochemistry, 46, 2007
2NUE
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BU of 2nue by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.9-Angstrom Resolution
Descriptor: 46-MER, Ribonuclease III
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
2HK8
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BU of 2hk8 by Molmil
Crystal structure of shikimate dehydrogenase from aquifex aeolicus at 2.35 angstrom resolution
Descriptor: Shikimate dehydrogenase
Authors:Gan, J.H, Prabakaran, P, Gu, Y.J, Andrykovitch, M, Li, Y, Liu, H.H, Yan, H, Ji, X.
Deposit date:2006-07-03
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism.
Biochemistry, 46, 2007
2EZ6
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BU of 2ez6 by Molmil
Crystal structure of Aquifex aeolicus RNase III (D44N) complexed with product of double-stranded RNA processing
Descriptor: 28-MER, MAGNESIUM ION, Ribonuclease III
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-11-10
Release date:2006-02-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insight into the Mechanism of Double-Stranded RNA Processing by Ribonuclease III.
Cell(Cambridge,Mass.), 124, 2006
6R0J
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BU of 6r0j by Molmil
The N-terminal domain of rhomboid protease YqgP
Descriptor: Rhomboid family serine protease
Authors:Began, J, Strisovsky, K, Veverka, V.
Deposit date:2019-03-13
Release date:2020-01-08
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease.
Embo J., 39, 2020
2G1K
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BU of 2g1k by Molmil
Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate at 1.75 angstrom resolution
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, CHLORIDE ION, SULFATE ION, ...
Authors:Gan, J, Gu, Y, Li, Y, Yan, H, Ji, X.
Deposit date:2006-02-14
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue.
Biochemistry, 45, 2006
1SGL
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BU of 1sgl by Molmil
The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease
Descriptor: SULFATE ION, trichomaglin
Authors:Gan, J.-H, Yu, L, Wu, J, Xu, H, Choudhary, J.S, Blackstock, W.P, Liu, W.-Y, Xia, Z.-X.
Deposit date:2004-02-24
Release date:2004-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease.
Structure, 12, 2004
5WSQ
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BU of 5wsq by Molmil
Crystal structure of C-Hg-T pair containing DNA duplex
Descriptor: 1,3-PROPANDIOL, DNA (5'-D(*GP*CP*CP*CP*GP*TP*GP*C)-3'), MERCURY (II) ION
Authors:Gan, J.H, Liu, H.H.
Deposit date:2016-12-08
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res., 45, 2017
5WSS
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BU of 5wss by Molmil
Crystal structure of T-Hg-T pair containing DNA duplex in the presence Ba2+
Descriptor: BARIUM ION, DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3'), MERCURY (II) ION
Authors:Gan, J.H, Liu, H.H.
Deposit date:2016-12-08
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res., 45, 2017

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