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PDB: 49 件

8EV7
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Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Seely, S.M, Gagnon, M.G.
登録日2022-10-19
公開日2023-08-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome.
Nat Commun, 14, 2023
8UU6
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BU of 8uu6 by Molmil
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU7
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BU of 8uu7 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UUA
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BU of 8uua by Molmil
Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)
分子名称: 23S Ribosomal RNA, 5S Ribosomal RNA, GTPase HflX, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU4
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BU of 8uu4 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU8
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BU of 8uu8 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU5
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BU of 8uu5 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU9
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BU of 8uu9 by Molmil
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
7UIU
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BU of 7uiu by Molmil
N2 sub-domain of IF2 bound to the 30S subunit in the Pseudomonas aeruginosa 70S ribosome initiation complex (focused classification and refinement)
分子名称: Translation initiation factor IF-2
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-03-29
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation.
Nat Commun, 13, 2022
7UNQ
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BU of 7unq by Molmil
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-A)
分子名称: GUANOSINE-5'-DIPHOSPHATE, Translation initiation factor IF-2
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNW
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BU of 7unw by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNT
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BU of 7unt by Molmil
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-B)
分子名称: GUANOSINE-5'-DIPHOSPHATE, Translation initiation factor IF-2
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNV
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BU of 7unv by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNU
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BU of 7unu by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNR
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BU of 7unr by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
8SYL
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BU of 8syl by Molmil
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
分子名称: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
著者Seely, S.M, Gagnon, M.G.
登録日2023-05-25
公開日2023-08-09
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome.
Nat Commun, 14, 2023
8V9J
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BU of 8v9j by Molmil
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S14, ...
著者Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G.
登録日2023-12-08
公開日2024-02-07
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8V9K
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BU of 8v9k by Molmil
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S2, ...
著者Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G.
登録日2023-12-08
公開日2024-02-07
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8V9L
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BU of 8v9l by Molmil
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S2, ...
著者Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G.
登録日2023-12-08
公開日2024-02-07
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8RDV
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BU of 8rdv by Molmil
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
分子名称: 16S rRNA, 23S rRNA, 5S rRNA, ...
著者Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V.
登録日2023-12-08
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8RD8
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BU of 8rd8 by Molmil
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S30, ...
著者Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V.
登録日2023-12-07
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8RDW
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BU of 8rdw by Molmil
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
分子名称: 16S rRNA, 23S rRNA, 5S rRNA, ...
著者Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V.
登録日2023-12-08
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
6UCQ
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BU of 6ucq by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome recycling complex
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Zhou, D, Tanzawa, T, Gagnon, M.G, Lin, J.
登録日2019-09-17
公開日2019-12-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural basis for ribosome recycling by RRF and tRNA.
Nat.Struct.Mol.Biol., 27, 2020
4Z8C
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BU of 4z8c by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Roy, R.N, Lomakin, I.B, Gagnon, M.G, Steitz, T.A.
登録日2015-04-08
公開日2015-05-20
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The mechanism of inhibition of protein synthesis by the proline-rich peptide oncocin.
Nat.Struct.Mol.Biol., 22, 2015
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