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PDB: 234 results

1Q53
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BU of 1q53 by Molmil
SOLUTION STRUCTURE OF HYPOTHETICAL ARABIDOPSIS THALIANA PROTEIN AT3G17210. CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS TARGET 13081
Descriptor: expressed protein: At3g17210
Authors:Lytle, B.L, Peterson, F.C, Volkman, B.F, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2003-08-06
Release date:2003-08-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana.
J.Biomol.Nmr, 28, 2004
3QPZ
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Crystal structure of the N59A mutant of the 3-deoxy-d-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, CHLORIDE ION, GLYCEROL, ...
Authors:Allison, T.M, Jameson, G.B, Parker, E.J, Cochrane, F.C.
Deposit date:2011-02-14
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Targeting the role of a key conserved motif for substrate selection and catalysis by 3-deoxy-D-manno-octulosonate 8-phosphate synthase
Biochemistry, 50, 2011
1RJJ
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Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thaliana
Descriptor: expressed protein
Authors:Cornilescu, G, Cornilescu, C.C, Zhao, Q, Frederick, R.O, Peterson, F.C, Thao, S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2003-11-19
Release date:2003-12-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a homodimeric hypothetical protein, at5g22580, a structural genomics target from Arabidopsis thaliana.
J.Biomol.Nmr, 29, 2004
1S4H
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NMR structure of cross-reactive peptides from L. braziliensis
Descriptor: 60S acidic ribosomal protein P2
Authors:Soares, M.R, Bisch, P.M, Campos de Carvalho, A.C, Valente, A.P, Almeida, F.C.L.
Deposit date:2004-01-16
Release date:2004-03-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Correlation between conformation and antibody binding: NMR structure of cross-reactive peptides from T. cruzi, human and L. braziliensis
Febs Lett., 560, 2004
6D6X
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BU of 6d6x by Molmil
HSP40 co-chaperone Sis1 J-domain
Descriptor: Type II HSP40 co-chaperone
Authors:Pinheiro, G.M.S, Amorim, G.C, Iqbal, A, Ramos, C.H.I, Almeida, F.C.L.
Deposit date:2018-04-23
Release date:2019-05-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR investigation on the structure and function of the isolated J-domain from Sis1: Evidence of transient inter-domain interactions in the full-length protein.
Arch.Biochem.Biophys., 669, 2019
6YC6
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Structure of C. glutamicum GlnK
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, PII protein
Authors:Grau, F.C, Muller, Y.A.
Deposit date:2020-03-18
Release date:2021-03-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of adenylylated and unadenylylated P II protein GlnK from Corynebacterium glutamicum.
Acta Crystallogr D Struct Biol, 77, 2021
6YC7
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Structure of adenylylated C. glutamicum GlnK
Descriptor: ADENINE ARABINOSE-5'-PHOSPHATE, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Grau, F.C, Muller, Y.A.
Deposit date:2020-03-18
Release date:2021-03-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of adenylylated and unadenylylated P II protein GlnK from Corynebacterium glutamicum.
Acta Crystallogr D Struct Biol, 77, 2021
8T3N
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BU of 8t3n by Molmil
Solution NMR structure of synthetic peptide AMPCry10Aa_5 rational designed from Cry10Aa bacterial protein
Descriptor: Pesticidal crystal protein Cry10Aa peptide
Authors:Barra, J.B, Freitas, C.D.P, Rios, T.B, Maximiano, M.R, Fernandes, F.C, Amorim, G.C, Porto, W.F, Grossi-de-Sa, M.F, Franco, O.F, Liao, L.M.
Deposit date:2023-06-07
Release date:2024-06-12
Last modified:2024-07-24
Method:SOLUTION NMR
Cite:Anti-Staphy Peptides Rationally Designed from Cry10Aa Bacterial Protein.
Acs Omega, 9, 2024
8T3H
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Solution NMR structure alpha-helix 3 of Cry10Aa protein
Descriptor: Pesticidal crystal protein Cry10Aa peptide
Authors:Barra, J.B, Freitas, C.D.P, Rios, T.B, Maximiano, M.R, Fernandes, F.C, Amorim, G.C, Porto, W.F, Grossi-de-Sa, M.F, Franco, O.F, Liao, L.M.
Deposit date:2023-06-07
Release date:2024-06-12
Method:SOLUTION NMR
Cite:Alpha-helix 3 of Cry10Aa protein
To Be Published
7A06
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BU of 7a06 by Molmil
Structure of human CKa1 in complex with compound o
Descriptor: 1,2-ETHANEDIOL, 1-[(4-phenylphenyl)methyl]-4-pyrrolidin-1-yl-pyridine, Choline kinase alpha
Authors:Serran-Aguilera, L, Mariotto, E, Rubbini, G, Castro Navas, F.C, Marco, C, Carrasco-Jimenez, M.P, Ballarotto, M, Macchiarulo, A, Hurtado-Guerrero, R, Viola, G, Lopez-Cara, L.C.
Deposit date:2020-08-06
Release date:2020-09-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis, biological evaluation, in silico modeling and crystallization of novel small monocationic molecules with potent antiproliferative activity by dual mechanism.
Eur.J.Med.Chem., 207, 2020
6FGM
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BU of 6fgm by Molmil
The NMR solution structure of the peptide AC12 from Hypsiboas raniceps
Descriptor: ALA-CYS-PHE-LEU-THR-ARG-LEU-GLY-THR-TYR-VAL-CYS
Authors:Popov, C.S.F.C, Simas, B.S, Goodfellow, B.J, Bocca, A.L, Andrade, P.B, Pereira, D, Valentao, P, Pereira, P.J.B, Rodrigues, J.E, Veloso Jr, P.H.H, Rezende, T.M.B.
Deposit date:2018-01-11
Release date:2019-01-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Host-defense peptides AC12, DK16 and RC11 with immunomodulatory activity isolated from Hypsiboas raniceps skin secretion.
Peptides, 113, 2019
8U1Z
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BU of 8u1z by Molmil
Crystal structure of the Fis1 cytosolic domain bound to a peptide inhibitor
Descriptor: Mitochondrial fission 1 protein, inhibitor peptide
Authors:Nolden, K.A, Peterson, F.C, Hill, R.B.
Deposit date:2023-09-04
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Novel Fis1 inhibiting peptide reverses microvascular endothelial dysfunction in vessels from humans with type 2 diabetes
To Be Published
7A04
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BU of 7a04 by Molmil
Structure of human CKa1 in complex with compound b
Descriptor: 1,2-ETHANEDIOL, 1-(phenylmethyl)-4-pyrrolidin-1-yl-pyridin-1-ium, Choline kinase alpha
Authors:Serran-Aguilera, L, Mariotto, E, Rubbini, G, Castro Navas, F.C, Marco, C, Carrasco-Jimenez, M.P, Ballarotto, M, Macchiarulo, A, Hurtado-Guerrero, R, Viola, G, Lopez-Cara, L.C.
Deposit date:2020-08-06
Release date:2020-09-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Synthesis, biological evaluation, in silico modeling and crystallization of novel small monocationic molecules with potent antiproliferative activity by dual mechanism.
Eur.J.Med.Chem., 207, 2020
7MLC
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BU of 7mlc by Molmil
PYL10 bound to the ABA pan-antagonist 4a
Descriptor: 1-{2-[3,5-dicyclopropyl-4-(4-{[(quinoxaline-2-carbonyl)amino]methyl}-1H-1,2,3-triazol-1-yl)phenyl]acetamido}cyclohexane-1-carboxylic acid, Abscisic acid receptor PYL10, GLYCEROL
Authors:Peterson, F.C, Vaidya, A.S, Volkman, B.F, Cutler, S.R.
Deposit date:2021-04-28
Release date:2021-09-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Click-to-lead design of a picomolar ABA receptor antagonist with potent activity in vivo.
Proc.Natl.Acad.Sci.USA, 118, 2021
7A2D
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BU of 7a2d by Molmil
Structure-function analyses of dual-BON domain protein DolP identifies phospholipid binding as a new mechanism for protein localisation to the cell division site
Descriptor: Uncharacterized protein YraP
Authors:Bryant, J.A, Morris, F.C, Knowles, T.J, Maderbocus, R, Heinz, E, Boelter, G, Alodaini, D, Colyer, A, Wotherspoon, P.J, Staunton, K.A, Jeeves, M, Browning, D.F, Sevastsyanovich, Y.R, Wells, T.J, Rossiter, A.E, Bavro, V.N, Sridhar, P, Ward, D.G, Chong, Z.S, Goodall, E.C.A, Icke, C, Teo, A, Chng, S.S, Roper, D.I, Lithgow, T, Cunningham, A.F, Banzhaf, M, Overduin, M, Henderson, I.R.
Deposit date:2020-08-17
Release date:2020-12-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of dual BON-domain protein DolP identifies phospholipid binding as a new mechanism for protein localisation.
Elife, 9, 2020
7MLD
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BU of 7mld by Molmil
PYL10 bound to the ABA pan-antagonist antabactin
Descriptor: Abscisic acid receptor PYL10, CITRIC ACID, antabactin
Authors:Peterson, F.C, Vaidya, A.S, Volkman, B.F, Cutler, S.R.
Deposit date:2021-04-28
Release date:2021-09-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Click-to-lead design of a picomolar ABA receptor antagonist with potent activity in vivo.
Proc.Natl.Acad.Sci.USA, 118, 2021
8UEK
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BU of 8uek by Molmil
Solution structure of ACKR3-targeting nanobody VUN701
Descriptor: ACKR3-targeting nanobody VUN701
Authors:Schlimgen, R.R, Peterson, F.C, Volkman, B.F.
Deposit date:2023-10-01
Release date:2024-06-12
Method:SOLUTION NMR
Cite:Structural basis for selectivity and antagonism in extracellular GPCR-nanobodies.
Nat Commun, 15, 2024
2FI2
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BU of 2fi2 by Molmil
Solution structure of the SCAN homodimer from MZF-1/ZNF42
Descriptor: Zinc finger protein 42
Authors:Volkman, B.F, Peterson, F.C, Sander, T.L, Waltner, J.K, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-12-27
Release date:2006-01-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the SCAN domain from the tumor suppressor protein MZF1.
J.Mol.Biol., 363, 2006
8UDZ
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BU of 8udz by Molmil
The Structure of LTBP-49247 Fab Bound to TGFbeta1 Small Latent Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LTBP-49247 Fab Heavy Chain, LTBP-49247 Fab Light Chain, ...
Authors:Streich Jr, F.C, Nicholls, S.B, Boston, C.J, Ramachandran, S.
Deposit date:2023-09-29
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:An antibody that inhibits TGF-beta 1 release from latent extracellular matrix complexes attenuates the progression of renal fibrosis.
Sci.Signal., 17, 2024
6FZ5
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Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and inhibitor bound
Descriptor: 4-[3-[(8~{a}~{R})-3,4,6,7,8,8~{a}-hexahydro-1~{H}-pyrrolo[1,2-a]pyrazin-2-yl]propyl]-2,6-bis(chloranyl)-~{N}-methyl-~{N}-(1,3,5-trimethylpyrazol-4-yl)benzenesulfonamide, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Kersten, F.C, Brenk, R.
Deposit date:2018-03-14
Release date:2019-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:How To Design Selective Ligands for Highly Conserved Binding Sites: A Case Study UsingN-Myristoyltransferases as a Model System.
J.Med.Chem., 63, 2020
2FBD
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BU of 2fbd by Molmil
The crystallographic structure of the digestive lysozyme 1 from Musca domestica at 1.90 Ang.
Descriptor: DI(HYDROXYETHYL)ETHER, Lysozyme 1, SULFATE ION
Authors:Cancado, F.C, Marana, S.R, Barbosa, J.A.R.G.
Deposit date:2005-12-09
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallization, data collection and phasing of two digestive lysozymes from Musca domestica.
Acta Crystallogr.,Sect.F, 62, 2006
7LP5
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BU of 7lp5 by Molmil
Structure of Nedd4L WW3 domain
Descriptor: Angiomotin,E3 ubiquitin-protein ligase NEDD4-like
Authors:Alam, S.L, Alian, A, Thompson, T, Rheinemann, L, Volkman, B.F, Peterson, F.C, Sundquist, W.I.
Deposit date:2021-02-11
Release date:2021-07-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release.
J.Biol.Chem., 297, 2021
6FZ3
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Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and inhibitor bound
Descriptor: 2,6-bis(chloranyl)-4-[2-(4-methylpiperazin-1-yl)pyridin-4-yl]-~{N}-(1,3,5-trimethylpyrazol-4-yl)benzenesulfonamide, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Kersten, F.C, Brenk, R.
Deposit date:2018-03-13
Release date:2019-03-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:How To Design Selective Ligands for Highly Conserved Binding Sites: A Case Study UsingN-Myristoyltransferases as a Model System.
J.Med.Chem., 63, 2020
2G0Q
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Solution structure of At5g39720.1 from Arabidopsis thaliana
Descriptor: AT5G39720.1 protein
Authors:Volkman, B.F, Peterson, F.C, Lytle, B.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-02-13
Release date:2006-02-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family.
Acta Crystallogr.,Sect.F, 62, 2006
7LP4
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Structure of Nedd4L WW3 domain
Descriptor: E3 ubiquitin-protein ligase NEDD4-like
Authors:Alam, S.L, Alian, A, Thompson, T, Rheinemann, L, Volkman, B.F, Peterson, F.C, Sundquist, W.I.
Deposit date:2021-02-11
Release date:2021-07-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release.
J.Biol.Chem., 297, 2021

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