Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 394 results

3HNC
DownloadVisualize
BU of 3hnc by Molmil
Crystal structure of human ribonucleotide reductase 1 bound to the effector TTP
Descriptor: MAGNESIUM ION, Ribonucleoside-diphosphate reductase large subunit, SULFATE ION, ...
Authors:Fairman, J.W, Wijerathna, S.R, Xu, H, Dealwis, C.G.
Deposit date:2009-05-31
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization.
Nat.Struct.Mol.Biol., 18, 2011
3ZJ2
DownloadVisualize
BU of 3zj2 by Molmil
Structure of Nab2p tandem zinc finger 34
Descriptor: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2, ZINC ION
Authors:Martinez-Lumbreras, S, Santiveri, C.M, Mirassou, Y, Zorrilla, S, Perez-Canadillas, J.M.
Deposit date:2013-01-16
Release date:2013-09-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two Singular Types of Ccch Tandem Zinc Finger in Nab2P Contribute to Polyadenosine RNA Recognition.
Structure, 21, 2013
3HNE
DownloadVisualize
BU of 3hne by Molmil
Crystal structure of human ribonucleotide reductase 1 bound to the effectors TTP and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase large subunit, ...
Authors:Fairman, J.W, Wijerathna, S.R, Xu, H, Dealwis, C.G.
Deposit date:2009-05-31
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization.
Nat.Struct.Mol.Biol., 18, 2011
5O1T
DownloadVisualize
BU of 5o1t by Molmil
Solution structure of the RNA binding domain of Nrd1
Descriptor: Protein NRD1
Authors:Martinez-Lumbreras, S, Perez-Canadillas, J.M.
Deposit date:2017-05-19
Release date:2017-08-02
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition.
Nucleic Acids Res., 45, 2017
3HND
DownloadVisualize
BU of 3hnd by Molmil
Crystal structure of human ribonucleotide reductase 1 bound to the effector TTP and substrate GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase large subunit, ...
Authors:Fairman, J.W, Wijerathna, S.R, Xu, H, Dealwis, C.G.
Deposit date:2009-05-31
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization.
Nat.Struct.Mol.Biol., 18, 2011
3HNF
DownloadVisualize
BU of 3hnf by Molmil
Crystal structure of human ribonucleotide reductase 1 bound to the effectors TTP and dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase large subunit, ...
Authors:Fairman, J.W, Wijerathna, S.R, Xu, H, Dealwis, C.G.
Deposit date:2009-05-31
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization.
Nat.Struct.Mol.Biol., 18, 2011
3ZJ1
DownloadVisualize
BU of 3zj1 by Molmil
Structure of Nab2p tandem zinc finger 12
Descriptor: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2, ZINC ION
Authors:Martinez-Lumbreras, S, Santiveri, C.M, Mirassou, Y, Zorrilla, S, Perez-Canadillas, J.M.
Deposit date:2013-01-16
Release date:2013-09-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two Singular Types of Ccch Tandem Zinc Finger in Nab2P Contribute to Polyadenosine RNA Recognition.
Structure, 21, 2013
2ZPY
DownloadVisualize
BU of 2zpy by Molmil
Crystal structure of the mouse radxin FERM domain complexed with the mouse CD44 cytoplasmic peptide
Descriptor: CD44 antigen, Radixin
Authors:Mori, T, Kitano, K, Terawaki, S, Maesaki, R, Fukami, Y, Hakoshima, T.
Deposit date:2008-07-31
Release date:2008-08-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for CD44 recognition by ERM proteins
J.Biol.Chem., 283, 2008
1BHU
DownloadVisualize
BU of 1bhu by Molmil
THE 3D STRUCTURE OF THE STREPTOMYCES METALLOPROTEINASE INHIBITOR, SMPI, ISOLATED FROM STREPTOMYCES NIGRESCENS TK-23, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: METALLOPROTEINASE INHIBITOR
Authors:Tate, S, Ohno, A, Seeram, S.S, Hiraga, K, Oda, K, Kainosho, M.
Deposit date:1998-06-10
Release date:1999-01-06
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structure of the Streptomyces metalloproteinase inhibitor, SMPI, isolated from Streptomyces nigrescens TK-23: another example of an ancestral beta gamma-crystallin precursor structure.
J.Mol.Biol., 282, 1998
3S1C
DownloadVisualize
BU of 3s1c by Molmil
Maize cytokinin oxidase/dehydrogenase complexed with N6-isopentenyladenosine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cytokinin dehydrogenase 1, ...
Authors:Kopecny, D, Briozzo, P, Morera, S.
Deposit date:2011-05-15
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
Febs J., 283, 2016
1U5K
DownloadVisualize
BU of 1u5k by Molmil
Recombinational repair protein RecO
Descriptor: ZINC ION, hypothetical protein
Authors:Makharashvili, N, Koroleva, O, Bera, S, Grandgenett, D.P, Korolev, S.
Deposit date:2004-07-27
Release date:2004-10-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Novel Structure of DNA Repair Protein RecO from Deinococcus radiodurans
STRUCTURE, 12, 2004
3S87
DownloadVisualize
BU of 3s87 by Molmil
Structure of Yeast Ribonucleotide Reductase 1 with dGTP and ADP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ahmad, M.F, Kaushal, P.S, Wan, Q, Wijeratna, S.R, Huang, M, Dealwis, C.D.
Deposit date:2011-05-27
Release date:2012-04-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and biochemical basis of lethal mutant R293A of yeast ribonucleotide reductase
To be Published
3S8C
DownloadVisualize
BU of 3s8c by Molmil
Structure of Yeast Ribonucleotide Reductase 1 R293A with AMPPNP and CDP
Descriptor: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Ahmad, M.F, Kaushal, P.S, Wan, Q, Wijeratna, S.R, Huang, M, Dealwis, C.D.
Deposit date:2011-05-27
Release date:2012-04-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural and biochemical basis of lethal mutant R293A of yeast ribonucleotide reductase
To be Published
1UCN
DownloadVisualize
BU of 1ucn by Molmil
X-ray structure of human nucleoside diphosphate kinase A complexed with ADP at 2 A resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ...
Authors:Chen, Y, Gallois-Montbrun, S, Schneider, B, Veron, M, Morera, S, Deville-Bonne, D, Janin, J.
Deposit date:2003-04-16
Release date:2003-09-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nucleotide Binding to Nucleoside Diphosphate Kinases: X-ray Structure of Human NDPK-A in Complex with ADP and Comparison to Protein Kinases
J.Mol.Biol., 332, 2003
3TBA
DownloadVisualize
BU of 3tba by Molmil
Structure of Yeast Ribonucleotide Reductase 1 Q288A with dGTP and ADP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ahmad, M.F, Kaushal, P.S, Wan, Q, Wijeratna, S.R, Huang, M, Dealwis, C.
Deposit date:2011-08-05
Release date:2012-04-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Role of Arginine 293 and Glutamine 288 in Communication between Catalytic and Allosteric Sites in Yeast Ribonucleotide Reductase.
J.Mol.Biol., 419, 2012
1S5Z
DownloadVisualize
BU of 1s5z by Molmil
NDP kinase in complex with adenosine phosphonoacetic acid
Descriptor: ADENOSINE PHOSPHONOACETIC ACID, Nucleoside diphosphate kinase, cytosolic, ...
Authors:Chen, Y, Morera, S, Pasti, C, Angusti, A, Solaroli, N, Veron, M, Janin, J, Manfredini, S, Deville-Bonne, D.
Deposit date:2004-01-22
Release date:2005-02-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Adenosine phosphonoacetic acid is slowly metabolized by NDP kinase.
Med.Chem., 1, 2005
3TB9
DownloadVisualize
BU of 3tb9 by Molmil
Structure of Yeast Ribonucleotide Reductase 1 Q288A with AMPPNP and CDP
Descriptor: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Ahmad, M.F, Kaushal, P.S, Wan, Q, Wijeratna, S.R, Huang, M, Dealwis, C.D.
Deposit date:2011-08-05
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Role of Arginine 293 and Glutamine 288 in Communication between Catalytic and Allosteric Sites in Yeast Ribonucleotide Reductase.
J.Mol.Biol., 419, 2012
3S8B
DownloadVisualize
BU of 3s8b by Molmil
Structure of Yeast Ribonucleotide Reductase 1 with AMPPNP and CDP
Descriptor: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Ahmad, M.F, Kaushal, P.S, Wan, Q, Wijeratna, S.R, Huang, M, Dealwis, C.D.
Deposit date:2011-05-27
Release date:2012-04-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical basis of lethal mutant R293A of yeast ribonucleotide reductase
To be Published
3IWK
DownloadVisualize
BU of 3iwk by Molmil
Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Aminoaldehyde dehydrogenase, GLYCEROL, ...
Authors:Kopecny, D, Morera, S, Briozzo, P.
Deposit date:2009-09-02
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes.
J.Mol.Biol., 396, 2010
4JMP
DownloadVisualize
BU of 4jmp by Molmil
Crystal structure of the chimerical protein CapA2B2
Descriptor: C-terminal fragment of CapA, Protein tyrosine kinase
Authors:Olivares-Illana, V, Morera, S, Grangeasse, C, Nessler, S.
Deposit date:2013-03-14
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Comparative analysis of the Tyr-kinases CapB1 and CapB2 fused to their cognate modulators CapA1 and CapA2 from Staphylococcus aureus
Plos One, 8, 2013
3S8A
DownloadVisualize
BU of 3s8a by Molmil
Structure of Yeast Ribonucleotide Reductase R293A with dGTP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase large chain 1
Authors:Ahmad, M.F, Kaushal, P.S, Wan, Q, Wijeratna, S.R, Huang, M, Dealwis, C.D.
Deposit date:2011-05-27
Release date:2012-04-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and biochemical basis of lethal mutant R293A of yeast ribonucleotide reductase
To be Published
2QMH
DownloadVisualize
BU of 2qmh by Molmil
structure of V267F mutant HprK/P
Descriptor: HPr kinase/phosphorylase
Authors:Chaptal, V, Vincent, F, Gueguen-Chaignon, V, Poncet, S, Deutscher, J, Nessler, S, Morera, S.
Deposit date:2007-07-16
Release date:2007-09-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Analysis of the Bacterial HPr Kinase/Phosphorylase V267F Mutant Gives Insights into the Allosteric Regulation Mechanism of This Bifunctional Enzyme.
J.Biol.Chem., 282, 2007
4JLV
DownloadVisualize
BU of 4jlv by Molmil
Crystal structure of the chimerical protein CapA1B1 in complex with ADP-Mg
Descriptor: ADENOSINE-5'-DIPHOSPHATE, C-terminal fragment of Membrane protein CapA1, Putative uncharacterized protein capB1, ...
Authors:Gruszczyk, J, Olivares-Illana, V, Nourikyan, J, Fleurie, A, Bechet, E, Aumont-Nicaise, M, Gueguen-Chaignon, V, Morera, S, Grangeasse, C, Nessler, S.
Deposit date:2013-03-13
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Comparative analysis of the Tyr-kinases CapB1 and CapB2 fused to their cognate modulators CapA1 and CapA2 from Staphylococcus aureus
Plos One, 8, 2013
2GA8
DownloadVisualize
BU of 2ga8 by Molmil
Crystal structure of YFH7 from Saccharomyces cerevisiae: a putative P-loop containing kinase with a circular permutation.
Descriptor: BETA-MERCAPTOETHANOL, Hypothetical 39.9 kDa protein, MERCURY (II) ION, ...
Authors:Chaptal, V, Morera, S.
Deposit date:2006-03-08
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.775 Å)
Cite:Crystal structure and functional analysis identify the P-loop containing protein YFH7 of Saccharomyces cerevisiae as an ATP-dependent kinase.
Proteins, 71, 2007
5OTC
DownloadVisualize
BU of 5otc by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with noroctopinic acid.
Descriptor: (2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon