2ZTW
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![BU of 2ztw by Molmil](/molmil-images/mine/2ztw) | Structure of 3-isopropylmalate dehydrogenase in complex with the inhibitor and NAD+ | Descriptor: | (2Z)-2-hydroxy-3-(methylsulfanyl)prop-2-enoic acid, 3-isopropylmalate dehydrogenase, MAGNESIUM ION, ... | Authors: | Nango, E, Kumasaka, T, Eguchi, T. | Deposit date: | 2008-10-10 | Release date: | 2009-10-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Crystal structure of 3-isopropylmalate dehydrogenase in complex with NAD(+) and a designed inhibitor Bioorg.Med.Chem., 17, 2009
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3WAD
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3WAG
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![BU of 3wag by Molmil](/molmil-images/mine/3wag) | Crystal structure of glycosyltransferase VinC in complex with DTDP | Descriptor: | Glycosyltransferase, MAGNESIUM ION, PHOSPHATE ION, ... | Authors: | Nango, E, Minami, A, Kumasaka, T, Eguchi, T. | Deposit date: | 2013-05-02 | Release date: | 2014-06-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of Glycosyltransferase VinC Involved in the Biosynthesis of Vicenistatin To be Published
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5Y1I
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![BU of 5y1i by Molmil](/molmil-images/mine/5y1i) | The crystal structure of GfsF | Descriptor: | Cytochrome P450, DI(HYDROXYETHYL)ETHER, PROTOPORPHYRIN IX CONTAINING FE, ... | Authors: | Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2017-07-20 | Release date: | 2017-09-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Substrate Recognition by a Dual-Function P450 Monooxygenase GfsF Involved in FD-891 Biosynthesis Chembiochem, 18, 2017
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6K97
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![BU of 6k97 by Molmil](/molmil-images/mine/6k97) | Crystal structure of fusion DH domain | Descriptor: | Fusion DH, SULFATE ION | Authors: | Kawasaki, D, Miyanaga, A, Chisuga, T, Kudo, F, Eguchi, T. | Deposit date: | 2019-06-14 | Release date: | 2019-11-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Functional and Structural Analyses of the Split-Dehydratase Domain in the Biosynthesis of Macrolactam Polyketide Cremimycin. Biochemistry, 58, 2019
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6J38
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![BU of 6j38 by Molmil](/molmil-images/mine/6j38) | Crystal structure of CmiS2 | Descriptor: | FAD-dependent glycine oxydase, FLAVIN-ADENINE DINUCLEOTIDE | Authors: | Kawasaki, D, Chisuga, T, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2019-01-04 | Release date: | 2019-06-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural Analysis of the Glycine Oxidase Homologue CmiS2 Reveals a Unique Substrate Recognition Mechanism for Formation of a beta-Amino Acid Starter Unit in Cremimycin Biosynthesis. Biochemistry, 58, 2019
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6J39
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![BU of 6j39 by Molmil](/molmil-images/mine/6j39) | Crystal structure of CmiS2 with inhibitor | Descriptor: | (3R)-3-[(carboxymethyl)sulfanyl]nonanoic acid, FAD-dependent glycine oxydase, FLAVIN-ADENINE DINUCLEOTIDE | Authors: | Kawasaki, D, Chisuga, T, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2019-01-04 | Release date: | 2019-06-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Structural Analysis of the Glycine Oxidase Homologue CmiS2 Reveals a Unique Substrate Recognition Mechanism for Formation of a beta-Amino Acid Starter Unit in Cremimycin Biosynthesis. Biochemistry, 58, 2019
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6K96
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![BU of 6k96 by Molmil](/molmil-images/mine/6k96) | Crystal structure of Ari2 | Descriptor: | Five-membered-cyclitol-phosphate synthase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Miyanaga, A, Tsunoda, T, Kudo, F, Eguchi, T. | Deposit date: | 2019-06-14 | Release date: | 2019-12-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Stereochemistry in the Reaction of themyo-Inositol Phosphate Synthase Ortholog Ari2 during Aristeromycin Biosynthesis. Biochemistry, 58, 2019
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5WSX
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![BU of 5wsx by Molmil](/molmil-images/mine/5wsx) | The crystal structure of SAV606 | Descriptor: | Uncharacterized protein | Authors: | Chisuga, T, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2016-12-08 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural analysis of the dual-function thioesterase SAV606 unravels the mechanism of Michael addition of glycine to an alpha , beta-unsaturated thioester. J. Biol. Chem., 292, 2017
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5WSY
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![BU of 5wsy by Molmil](/molmil-images/mine/5wsy) | The complex structure of SAV606 with N-carboxymethyl-3-aminobutyrate | Descriptor: | (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid, Uncharacterized protein | Authors: | Chisuga, T, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2016-12-08 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural analysis of the dual-function thioesterase SAV606 unravels the mechanism of Michael addition of glycine to an alpha , beta-unsaturated thioester. J. Biol. Chem., 292, 2017
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7EIP
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![BU of 7eip by Molmil](/molmil-images/mine/7eip) | Crystal structure of ligand-free chondroitin ABC lyase I | Descriptor: | ACETATE ION, Chondroitin sulfate ABC endolyase, MAGNESIUM ION | Authors: | Takashima, M, Miyanaga, A, Eguchi, T. | Deposit date: | 2021-03-31 | Release date: | 2021-08-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.88 Å) | Cite: | Substrate specificity of Chondroitinase ABC I based on analyses of biochemical reactions and crystal structures in complex with disaccharides. Glycobiology, 31, 2021
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7EIS
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7EIR
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![BU of 7eir by Molmil](/molmil-images/mine/7eir) | Crystal structure of chondroitin ABC lyase I in complex with chondroitin disaccharide 6S | Descriptor: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Chondroitin sulfate ABC endolyase, GLYCEROL, ... | Authors: | Takashima, M, Miyanaga, A, Eguchi, T. | Deposit date: | 2021-03-31 | Release date: | 2021-08-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.92 Å) | Cite: | Substrate specificity of Chondroitinase ABC I based on analyses of biochemical reactions and crystal structures in complex with disaccharides. Glycobiology, 31, 2021
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7EIQ
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7F2R
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![BU of 7f2r by Molmil](/molmil-images/mine/7f2r) | Crystal structure of VinK-VinL covalent complex formed with a pantetheineamide cross-linking probe | Descriptor: | Acyl-carrier-protein, Malonyl-CoA-[acyl-carrier-protein] transacylase, N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide | Authors: | Miyanaga, A, Ouchi, R, Kudo, F, Eguchi, T. | Deposit date: | 2021-06-14 | Release date: | 2021-09-01 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Complex structure of the acyltransferase VinK and the carrier protein VinL with a pantetheine cross-linking probe. Acta Crystallogr.,Sect.F, 77, 2021
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5ZDM
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![BU of 5zdm by Molmil](/molmil-images/mine/5zdm) | The ligand-free structure of FomD | Descriptor: | CALCIUM ION, FomD, GLYCEROL | Authors: | Sato, S, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2018-02-23 | Release date: | 2018-07-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.38 Å) | Cite: | Biochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl ( S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis. Biochemistry, 57, 2018
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5ZDN
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![BU of 5zdn by Molmil](/molmil-images/mine/5zdn) | The complex structure of FomD with CDP | Descriptor: | CYTIDINE-5'-DIPHOSPHATE, FomD, GLYCEROL, ... | Authors: | Sato, S, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2018-02-23 | Release date: | 2018-07-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | Biochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl ( S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis. Biochemistry, 57, 2018
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3WV5
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![BU of 3wv5 by Molmil](/molmil-images/mine/3wv5) | Complex structure of VinN with 3-methylaspartate | Descriptor: | (2S,3S)-3-methyl-aspartic acid, Non-ribosomal peptide synthetase | Authors: | Miyanaga, A, Cieslak, J, Shinohara, Y, Kudo, F, Eguchi, T. | Deposit date: | 2014-05-15 | Release date: | 2014-10-01 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The crystal structure of the adenylation enzyme VinN reveals a unique beta-amino acid recognition mechanism J.Biol.Chem., 289, 2014
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3WMR
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![BU of 3wmr by Molmil](/molmil-images/mine/3wmr) | Crystal structure of VinJ | Descriptor: | 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, GLYCEROL, Proline iminopeptidase | Authors: | Shinohara, Y, Miyanaga, A, Kudo, F, Eguchi, T. | Deposit date: | 2013-11-22 | Release date: | 2014-02-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates Febs Lett., 588, 2014
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3WV4
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![BU of 3wv4 by Molmil](/molmil-images/mine/3wv4) | Crystal structure of VinN | Descriptor: | Non-ribosomal peptide synthetase | Authors: | Miyanaga, A, Cieslak, J, Shinohara, Y, Kudo, F, Eguchi, T. | Deposit date: | 2014-05-15 | Release date: | 2014-10-01 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | The crystal structure of the adenylation enzyme VinN reveals a unique beta-amino acid recognition mechanism J.Biol.Chem., 289, 2014
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3WVN
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![BU of 3wvn by Molmil](/molmil-images/mine/3wvn) | Complex structure of VinN with L-aspartate | Descriptor: | ASPARTIC ACID, Non-ribosomal peptide synthetase | Authors: | Miyanaga, A, Cieslak, J, Shinohara, Y, Kudo, F, Eguchi, T. | Deposit date: | 2014-05-30 | Release date: | 2014-10-01 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The crystal structure of the adenylation enzyme VinN reveals a unique beta-amino acid recognition mechanism J.Biol.Chem., 289, 2014
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6JW8
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![BU of 6jw8 by Molmil](/molmil-images/mine/6jw8) | The crystal structure of KanD2 in complex with NADH and 3"-deamino-3"-hydroxykanamycin B | Descriptor: | (2S,3R,4S,5S,6R)-2-[(1S,2S,3R,4S,6R)-3-[(2R,3R,4R,5S,6R)-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Dehydrogenase | Authors: | Kudo, F, Kitayama, Y, Miyanaga, A, Hirayama, A, Eguchi, T. | Deposit date: | 2019-04-18 | Release date: | 2020-04-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Biochemical and structural analysis of a dehydrogenase, KanD2, and an aminotransferase, KanS2, that are responsible for the construction of the kanosamine moiety in kanamycin biosynthesis. Biochemistry, 59, 2020
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6JW7
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![BU of 6jw7 by Molmil](/molmil-images/mine/6jw7) | The crystal structure of KanD2 in complex with NADH and 3"-deamino-3"-hydroxykanamycin A | Descriptor: | (2R,3S,4S,5R,6R)-2-(aminomethyl)-6-[(1R,2S,3S,4R,6S)-4,6-bis(azanyl)-3-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxane-3,4,5-triol, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Dehydrogenase | Authors: | Kudo, F, Kitayama, Y, Miyanaga, A, Hirayama, A, Eguchi, T. | Deposit date: | 2019-04-18 | Release date: | 2020-04-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.36 Å) | Cite: | Biochemical and structural analysis of a dehydrogenase, KanD2, and an aminotransferase, KanS2, that are responsible for the construction of the kanosamine moiety in kanamycin biosynthesis. Biochemistry, 59, 2020
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6JW6
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![BU of 6jw6 by Molmil](/molmil-images/mine/6jw6) | The crystal structure of KanD2 in complex with NAD | Descriptor: | Dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Kudo, F, Kitayama, Y, Miyanaga, A, Hirayama, A, Eguchi, T. | Deposit date: | 2019-04-18 | Release date: | 2020-04-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Biochemical and structural analysis of a dehydrogenase, KanD2, and an aminotransferase, KanS2, that are responsible for the construction of the kanosamine moiety in kanamycin biosynthesis. Biochemistry, 59, 2020
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5ZK4
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![BU of 5zk4 by Molmil](/molmil-images/mine/5zk4) | The structure of DSZS acyltransferase with carrier protein | Descriptor: | DisA protein, DisD protein, N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide, ... | Authors: | Miyanaga, A, Ouchi, R, Kudo, F, Eguchi, T. | Deposit date: | 2018-03-23 | Release date: | 2018-06-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Structural basis of protein-protein interactions between a trans-acting acyltransferase and acyl carrier protein in polyketide disorazole biosynthesis J. Am. Chem. Soc., 140, 2018
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