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PDB: 427 件

1SNK
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Cathepsin K complexed with carbamate derivatized norleucine aldehyde
分子名称: Cathepsin K, N2-({[(4-BROMOPHENYL)METHYL]OXY}CARBONYL)-N1-[(1S)-1-FORMYLPENTYL]-L-LEUCINAMIDE, SULFATE ION
著者Boros, E.E, Deaton, D.N, Hassell, A.M, McFadyen, R.B, Miller, A.B, Miller, L.R, Shewchuk, L.M, Thompson, J.B, Willard Jr, D.H, Wright, L.L.
登録日2004-03-11
公開日2004-06-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Exploration of the P(2)-P(3) SAR of aldehyde cathepsin K inhibitors
Bioorg.Med.Chem.Lett., 14, 2004
1SNC
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THE CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF STAPHYLOCOCCAL NUCLEASE, CA2+, AND THE INHIBITOR PD*TP, REFINED AT 1.65 ANGSTROMS
分子名称: CALCIUM ION, THERMONUCLEASE PRECURSOR, THYMIDINE-3',5'-DIPHOSPHATE
著者Loll, P.J, Lattman, E.E.
登録日1989-07-21
公開日1990-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The crystal structure of the ternary complex of staphylococcal nuclease, Ca2+, and the inhibitor pdTp, refined at 1.65 A.
Proteins, 5, 1989
1SLS
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IMMOBILE SLIPPED-LOOP STRUCTURE (SLS) OF DNA HOMODIMER IN SOLUTION, NMR, 9 STRUCTURES
分子名称: OLIGODEOXYRIBONUCLEOTIDE
著者Ulyanov, N.B, Ivanov, V.I, Minyat, E.E, Khomyakova, E.B, Petrova, M.V, Lesiak, K, James, T.L.
登録日1997-09-30
公開日1998-04-08
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A pseudosquare knot structure of DNA in solution.
Biochemistry, 37, 1998
1SOI
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CRYSTAL STRUCTURE OF NUDIX HYDROLASE DR1025 IN COMPLEX WITH SM+3
分子名称: MutT/nudix family protein, SAMARIUM (III) ION
著者Ranatunga, W, Hill, E.E, Mooster, J.L, Holbrook, E.L, Schulze-Gahmen, U, Xu, W, Bessman, M.J, Brenner, S.E, Holbrook, S.R, Berkeley Structural Genomics Center (BSGC)
登録日2004-03-15
公開日2004-05-11
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Studies of the Nudix Hydrolase DR1025 From Deinococcus radiodurans and its Ligand Complexes.
J.Mol.Biol., 339, 2004
1SNM
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BU of 1snm by Molmil
ACTIVE SITE MUTANT GLU-43 (RIGHT ARROW) ASP IN STAPHYLOCOCCAL NUCLEASE DISPLAYS NONLOCAL STRUCTURAL CHANGES
分子名称: CALCIUM ION, THERMONUCLEASE PRECURSOR, THYMIDINE-3',5'-DIPHOSPHATE
著者Loll, P.J, Lattman, E.E.
登録日1990-02-15
公開日1991-07-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Active site mutant Glu-43 --> Asp in staphylococcal nuclease displays nonlocal structural changes.
Biochemistry, 29, 1990
1SND
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STAPHYLOCOCCAL NUCLEASE DIMER CONTAINING A DELETION OF RESIDUES 114-119 COMPLEXED WITH CALCIUM CHLORIDE AND THE COMPETITIVE INHIBITOR DEOXYTHYMIDINE-3',5'-DIPHOSPHATE
分子名称: STAPHYLOCOCCAL NUCLEASE DIMER
著者Green, S.M, Gittis, A.G, Meeker, A.K, Lattman, E.E.
登録日1996-08-23
公開日1997-04-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献One-step evolution of a dimer from a monomeric protein.
Nat.Struct.Biol., 2, 1995
1STG
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TWO DISTINCTLY DIFFERENT METAL BINDING MODES ARE SEEN IN X-RAY CRYSTAL STRUCTURES OF STAPHYLOCOCCAL NUCLEASE-COBALT(II)-NUCLEOTIDE COMPLEXES
分子名称: COBALT (II) ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
著者Loll, P.J, Quirk, S, Lattman, E.E.
登録日1994-10-27
公開日1995-01-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray crystal structures of staphylococcal nuclease complexed with the competitive inhibitor cobalt(II) and nucleotide.
Biochemistry, 34, 1995
1STB
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ACCOMMODATION OF INSERTION MUTATIONS ON THE SURFACE AND IN THE INTERIOR OF STAPHYLOCOCCAL NUCLEASE
分子名称: CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
著者Quirk, S, Gittis, A, Keefe, L.J, Lattman, E.E.
登録日1994-01-17
公開日1994-07-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Accommodation of insertion mutations on the surface and in the interior of staphylococcal nuclease.
Protein Sci., 3, 1994
3GPH
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Human cytochrome P450 2E1 in complex with omega-imidazolyl-decanoic acid
分子名称: 10-(1H-imidazol-1-yl)decanoic acid, Cytochrome P450 2E1, PROTOPORPHYRIN IX CONTAINING FE
著者Porubsky, P.R, Battaile, K.P, Scott, E.E.
登録日2009-03-23
公開日2010-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Human cytochrome P450 2E1 structures with fatty acid analogs reveal a previously unobserved binding mode.
J.Biol.Chem., 285, 2010
3FW0
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Structure of Peptidyl-alpha-hydroxyglycine alpha-Amidating Lyase (PAL) bound to alpha-hydroxyhippuric acid (non-peptidic substrate)
分子名称: (2S)-hydroxy[(phenylcarbonyl)amino]ethanoic acid, CALCIUM ION, MERCURY (II) ION, ...
著者Chufan, E.E, De, M, Eipper, B.A, Mains, R.E, Amzel, L.M.
登録日2009-01-16
公開日2009-09-01
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme.
Structure, 17, 2009
3FVZ
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Structure of Peptidyl-alpha-hydroxyglycine alpha-Amidating Lyase (PAL)
分子名称: ACETATE ION, CALCIUM ION, FE (III) ION, ...
著者Chufan, E.E, De, M, Eipper, B.A, Mains, R.E, Amzel, L.M.
登録日2009-01-16
公開日2009-09-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme.
Structure, 17, 2009
3IM9
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Crystal structure of MCAT from Staphylococcus aureus
分子名称: ACETATE ION, CALCIUM ION, Malonyl CoA-acyl carrier protein transacylase, ...
著者Hong, S.K, Kim, K.H, Park, J.K, Kim, Y.M, Kim, E.E.
登録日2009-08-10
公開日2010-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献New design platform for malonyl-CoA-acyl carrier protein transacylase
Febs Lett., 584, 2010
3IM8
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Crystal structure of MCAT from Streptococcus pneumoniae
分子名称: ACETATE ION, Malonyl acyl carrier protein transacylase
著者Hong, S.K, Kim, K.H, Park, J.K, Kim, Y.M, Kim, E.E.
登録日2009-08-10
公開日2010-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献New design platform for malonyl-CoA-acyl carrier protein transacylase
Febs Lett., 584, 2010
3ITQ
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BU of 3itq by Molmil
Crystal Structure of a Prolyl 4-Hydroxylase from Bacillus anthracis
分子名称: GLYCEROL, PHOSPHATE ION, Prolyl 4-hydroxylase, ...
著者Culpepper, M.A, Scott, E.E, Limburg, J.
登録日2009-08-28
公開日2009-12-15
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of prolyl 4-hydroxylase from Bacillus anthracis.
Biochemistry, 49, 2010
3IQB
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Tt I75F/L144F H-NOX
分子名称: Methyl-accepting chemotaxis protein, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Weinert, E.E, Plate, L, Whited, C.A, Olea Jr, C, Marletta, M.A.
登録日2009-08-19
公開日2010-01-19
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Determinants of Ligand Affinity and Heme Reactivity in H-NOX Domains.
Angew.Chem.Int.Ed.Engl., 49, 2009
3J05
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BU of 3j05 by Molmil
Three-dimensional structure of Dengue virus serotype 1 complexed with HMAb 14c10 Fab
分子名称: envelope protein
著者Teoh, E.P, Kukkaro, P, Teo, E.W, Lim, A, Tan, T.T, Shi, P.Y, Yip, A, Schul, W, Leo, Y.S, Chan, S.H, Smith, K.G.C, Ooi, E.E, Kemeny, D.M, Ng, G, Ng, M.L, Alonso, S, Fisher, D, Hanson, B, Lok, S.M, MacAry, P.A.
登録日2011-04-01
公開日2012-07-04
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献The structural basis for serotype-specific neutralization of dengue virus by a human antibody.
Sci Transl Med, 4, 2012
3KDB
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Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10006
分子名称: (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, GLYCEROL, Protease
著者Chufan, E.E, Lafont, V, Freire, E, Amzel, L.M.
登録日2009-10-22
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献How much binding affinity can be gained by filling a cavity?
Chem.Biol.Drug Des., 75, 2010
3KDC
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Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10074
分子名称: (4R)-3-[(2S,3S)-3-{[(2,6-dichlorophenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, CHLORIDE ION, GLYCEROL, ...
著者Chufan, E.E, Kawasaki, Y, Freire, E, Amzel, L.M.
登録日2009-10-22
公開日2010-03-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献How much binding affinity can be gained by filling a cavity?
Chem.Biol.Drug Des., 75, 2010
3KDD
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Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10265
分子名称: (4R)-3-[(2S,3S)-3-{[(2,6-difluorophenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H- inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, GLYCEROL, Protease
著者Chufan, E.E, Kawasaki, Y, Freire, E, Amzel, L.M.
登録日2009-10-22
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献How much binding affinity can be gained by filling a cavity?
Chem.Biol.Drug Des., 75, 2010
3LC4
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Human Cytochrome P450 2E1 in Complex with Omega-Imidazolyl-Dodecanoic Acid
分子名称: 12-(1H-imidazol-1-yl)dodecanoic acid, Cytochrome P450 2E1, PROTOPORPHYRIN IX CONTAINING FE
著者Scott, E.E, Porubsky, P.R.
登録日2010-01-09
公開日2010-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Human cytochrome P450 2E1 structures with fatty acid analogs reveal a previously unobserved binding mode.
J.Biol.Chem., 285, 2010
3K30
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Histamine dehydrogenase from Nocardiodes simplex
分子名称: ADENOSINE-5'-DIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Histamine dehydrogenase, ...
著者Scott, E.E, Reed, T.M, Limburg, J.
登録日2009-09-30
公開日2010-05-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of histamine dehydrogenase from Nocardioides simplex.
J.Biol.Chem., 285, 2010
3JB4
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Structure of Ljungan virus: insight into picornavirus packaging
分子名称: VP0, VP1, VP3
著者Zhu, L, Wang, X.X, Ren, J.S, Porta, C, Wenham, H, Ekstrom, J.-O, Panjwani, A, Knowles, N.J, Kotecha, A, Siebert, A, Lindberg, M, Fry, E.E, Rao, Z.H, Tuthill, T.J, Stuart, D.I.
登録日2015-07-21
公開日2015-10-21
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structure of Ljungan virus provides insight into genome packaging of this picornavirus.
Nat Commun, 6, 2015
3MIC
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Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound azide obtained by co-crystallization
分子名称: AZIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Chufan, E.E, Eipper, B.A, Mains, R.E, Amzel, L.M.
登録日2010-04-10
公開日2010-11-24
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Differential Reactivity Between the Two Copper Sites of Peptidylglycine alpha-Hydroxylating Monooxygenase (PHM)
J.Am.Chem.Soc., 132, 2010
3MLL
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Reduced (Cu+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound azide
分子名称: AZIDE ION, COPPER (II) ION, NICKEL (II) ION, ...
著者Chufan, E.E, Eipper, B.A, Mains, R.E, Amzel, L.M.
登録日2010-04-16
公開日2011-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Differential reactivity between two copper sites in peptidylglycine alpha-hydroxylating monooxygenase
J.Am.Chem.Soc., 132, 2010
3KOH
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Cytochrome P450 2E1 with omega-imidazolyl octanoic acid
分子名称: 8-(1H-imidazol-1-yl)octanoic acid, Cytochrome P450 2E1, PROTOPORPHYRIN IX CONTAINING FE
著者Scott, E.E, Porubsky, P.R.
登録日2009-11-13
公開日2010-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Human cytochrome P450 2E1 structures with fatty acid analogs reveal a previously unobserved binding mode.
J.Biol.Chem., 285, 2010

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