Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 40926 件

8V86
DownloadVisualize
BU of 8v86 by Molmil
Alpha7-nicotinic acetylcholine receptor bound to GAT107
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3aR,4S,9bS)-4-(4-bromophenyl)-3a,4,5,9b-tetrahydro-3H-cyclopenta[c]quinoline-8-sulfonamide, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, ...
著者Burke, S.M, Noviello, C.M, Hibbs, R.E.
登録日2023-12-04
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.47 Å)
主引用文献Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation.
Cell, 187, 2024
6XNY
DownloadVisualize
BU of 6xny by Molmil
Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Paired-Form)
分子名称: 12RSS integration strand (55-mer), 12RSS signal DNA top strand (34-mer), 23RSS integration strand (66-mer), ...
著者Zhang, Y, Corbett, E, Wu, S, Schatz, D.G.
登録日2020-07-05
公開日2020-08-26
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase.
Embo J., 39, 2020
6FZV
DownloadVisualize
BU of 6fzv by Molmil
Crystal structure of the metalloproteinase enhancer PCPE-1 bound to the procollagen C propeptide trimer (short)
分子名称: CALCIUM ION, CHLORIDE ION, CITRATE ANION, ...
著者Pulido, D, Hohenester, E.
登録日2018-03-15
公開日2018-07-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural Basis for the Acceleration of Procollagen Processing by Procollagen C-Proteinase Enhancer-1.
Structure, 26, 2018
5K0D
DownloadVisualize
BU of 5k0d by Molmil
Crystal structure of laccase from Thermus thermophilus HB27 (Cu(II)-cyclophanes, 3 min)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
著者Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Stojanoff, V, Rudino-Pinera, E.
登録日2016-05-17
公開日2017-05-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.824 Å)
主引用文献Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
6CY6
DownloadVisualize
BU of 6cy6 by Molmil
Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Escherichia coli in complex with tris(hydroxymethyl)aminomethane.
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Filippova, E.V, Minasov, G, Kiryukhina, O, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2018-04-04
公開日2018-04-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli.
Acta Crystallogr D Struct Biol, 75, 2019
4WUC
DownloadVisualize
BU of 4wuc by Molmil
N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from 100 mM NaCl condition
分子名称: CHLORIDE ION, DNA gyrase subunit B, MAGNESIUM ION, ...
著者Hearnshaw, S.J, Chung, T.T, Stevenson, C.E.M, Maxwell, A, Lawson, D.M.
登録日2014-10-31
公開日2015-04-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The role of monovalent cations in the ATPase reaction of DNA gyrase
Acta Crystallogr.,Sect.D, 71, 2015
6Q4C
DownloadVisualize
BU of 6q4c by Molmil
CDK2 in complex with FragLite16
分子名称: 4-bromanyl-1,8-naphthyridine, Cyclin-dependent kinase 2
著者Wood, D.J, Martin, M.P, Noble, M.E.M.
登録日2018-12-05
公開日2019-03-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献FragLites-Minimal, Halogenated Fragments Displaying Pharmacophore Doublets. An Efficient Approach to Druggability Assessment and Hit Generation.
J.Med.Chem., 62, 2019
6XVB
DownloadVisualize
BU of 6xvb by Molmil
Crystal structure of the kinase domain of human c-KIT with a cyclic imidate inhibitor covalently bound to Cys788
分子名称: Mast/stem cell growth factor receptor Kit,Mast/stem cell growth factor receptor Kit, ~{N}-(4,4-dimethyl-2-propyl-3,1-benzoxazin-6-yl)-2-[3-methoxy-5-(7-methoxyquinolin-4-yl)oxy-pyridin-2-yl]ethanamide
著者Schimpl, M, McAuley, K, Hoyt, E.A, Thomas, M, Bodnarchuk, M.S, Lewis, H.J, Barratt, D, Deery, M.J, Ogg, D.J, Bernardes, G.J.L, Ward, R.A, Kettle, J.G, Waring, M.J.
登録日2020-01-21
公開日2020-05-27
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Alkynyl Benzoxazines and Dihydroquinazolines as Cysteine Targeting Covalent Warheads and Their Application in Identification of Selective Irreversible Kinase Inhibitors.
J.Am.Chem.Soc., 142, 2020
6Q4F
DownloadVisualize
BU of 6q4f by Molmil
CDK2 in complex with FragLite32
分子名称: Cyclin-dependent kinase 2, PYRIDINE-2,6-DIAMINE
著者Wood, D.J, Martin, M.P, Noble, M.E.M.
登録日2018-12-05
公開日2019-03-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献FragLites-Minimal, Halogenated Fragments Displaying Pharmacophore Doublets. An Efficient Approach to Druggability Assessment and Hit Generation.
J.Med.Chem., 62, 2019
3B1Q
DownloadVisualize
BU of 3b1q by Molmil
Structure of Burkholderia thailandensis nucleoside kinase (BthNK) in complex with inosine
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ACETATE ION, INOSINE, ...
著者Yasutake, Y, Ota, H, Hino, E, Sakasegawa, S, Tamura, T.
登録日2011-07-05
公開日2011-11-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity
Acta Crystallogr.,Sect.D, 67, 2011
6Q68
DownloadVisualize
BU of 6q68 by Molmil
Crystal structure of bovine ACBD3 GOLD domain in complex with 3A protein of enterovirus-F2 (fusion protein)
分子名称: Acyl-CoA binding domain containing 3, Genome polyprotein, beta-D-glucopyranose
著者Smola, M, Boura, E, Klima, M.
登録日2018-12-10
公開日2019-11-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.161 Å)
主引用文献Structural basis for hijacking of the host ACBD3 protein by bovine and porcine enteroviruses and kobuviruses.
Arch. Virol., 165, 2020
8AC6
DownloadVisualize
BU of 8ac6 by Molmil
Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): medium class from symmetry expansion
分子名称: p70
著者Castells-Graells, R, Hesketh, E.L, Johnson, J.E, Ranson, N.A, Lawson, D.M, Lomonossoff, G.P.
登録日2022-07-05
公開日2022-12-28
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Decoding virus maturation with cryo-EM structures of intermediates
To be published
8ACH
DownloadVisualize
BU of 8ach by Molmil
Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): large class from symmetry expansion
分子名称: p70
著者Castells-Graells, R, Hesketh, E.L, Johnson, J.E, Ranson, N.A, Lawson, D.M, Lomonossoff, G.P.
登録日2022-07-05
公開日2022-12-28
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.91 Å)
主引用文献Decoding virus maturation with cryo-EM structures of intermediates
To be published
6D1O
DownloadVisualize
BU of 6d1o by Molmil
FT_5 dioxygenase apoenzyme
分子名称: (R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase
著者Rydel, T.J, Halls, C.E.
登録日2018-04-12
公開日2018-08-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Development of enzymes for robust aryloxyphenoxypropionate and synthetic auxin herbicide tolerance traits in maize and soybean crops.
Pest Manag. Sci., 75, 2019
5NCN
DownloadVisualize
BU of 5ncn by Molmil
Crystal structure Dbf2(NTR)-Mob1 complex
分子名称: CHLORIDE ION, Cell cycle protein kinase DBF2, DBF2 kinase activator protein MOB1, ...
著者Gogl, G, Remenyi, A, Parker, B, Weiss, E.
登録日2017-03-06
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Ndr/Lats Kinases Bind Specific Mob-Family Coactivators through a Conserved and Modular Interface.
Biochemistry, 2020
6W6N
DownloadVisualize
BU of 6w6n by Molmil
K106L/A131E mutant of cytochrome P460 from Nitrosomonas sp. AL212
分子名称: Cytochrome P460, HEME C
著者Coleman, R.E, Lancaster, K.M.
登録日2020-03-17
公開日2020-06-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The Heme-Lys Cross-Link in Cytochrome P460 Promotes Catalysis by Enforcing Secondary Coordination Sphere Architecture.
Biochemistry, 59, 2020
8AAY
DownloadVisualize
BU of 8aay by Molmil
Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): small class from symmetry expansion
分子名称: p70
著者Castells-Graells, R, Hesketh, E.L, Johnson, J.E, Ranson, N.A, Lawson, D.M, Lomonossoff, G.P.
登録日2022-07-04
公開日2022-12-28
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Decoding virus maturation with cryo-EM structures of intermediates
To be published
6D31
DownloadVisualize
BU of 6d31 by Molmil
Structure of human Usb1 with adenosine 5'-monophosphate
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6HVC
DownloadVisualize
BU of 6hvc by Molmil
NMR structure of Urotensin Peptide Asp-c[Cys-Phe-Trp-(N-Me)Lys-Tyr-Cys]-Val in SDS solution
分子名称: Urotensin-2
著者Brancaccio, D, Carotenuto, A, Merlino, F, Billard, E, Yousif, A.M, Di Maro, S, Abate, L, Bellavita, R, D'Emmanuele di Villa Bianca, R, Santicioli, P, Marinelli, L, Novellino, E, Hebert, T.E, Lubell, W.D, Chatenet, D, Grieco, P.
登録日2018-10-10
公開日2019-01-16
最終更新日2019-04-24
実験手法SOLUTION NMR
主引用文献Functional Selectivity Revealed by N-Methylation Scanning of Human Urotensin II and Related Peptides.
J.Med.Chem., 62, 2019
3HPT
DownloadVisualize
BU of 3hpt by Molmil
Crystal structure of human FxA in complex with (S)-2-cyano-1-(2-methylbenzofuran-5-yl)-3-(2-oxo-1-(2-oxo-2-(pyrrolidin-1-yl)ethyl)azepan-3-yl)guanidine
分子名称: 1-cyano-2-(2-methyl-1-benzofuran-5-yl)-3-[(3S)-2-oxo-1-(2-oxo-2-pyrrolidin-1-ylethyl)azepan-3-yl]guanidine, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, ...
著者Klei, H.E, Ghosh, K, Rushith, A, Kish, K.
登録日2009-06-04
公開日2009-11-17
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Cyanoguanidine-based lactam derivatives as a novel class of orally bioavailable factor Xa inhibitors.
Bioorg.Med.Chem.Lett., 19, 2009
7QFN
DownloadVisualize
BU of 7qfn by Molmil
Human Topoisomerase II Beta ATPase ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, MAGNESIUM ION, ...
著者Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
登録日2021-12-06
公開日2022-05-25
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.621 Å)
主引用文献A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
1JP7
DownloadVisualize
BU of 1jp7 by Molmil
Crystal Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase
分子名称: 5'-deoxy-5'-methylthioadenosine phosphorylase, SULFATE ION
著者Appleby, T.C, Mathews, I.I, Porcelli, M, Cacciapuoti, G, Ealick, S.E.
登録日2001-08-01
公開日2001-10-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus.
J.Biol.Chem., 276, 2001
7QO4
DownloadVisualize
BU of 7qo4 by Molmil
26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)
分子名称: 26S proteasome regulatory subunit RPN1, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Hung, K.Y.S, Klumpe, S, Eisele, M.R, Elsasser, S, Geng, T.T, Cheng, C, Joshi, T, Rudack, T, Sakata, E, Finley, D.
登録日2021-12-23
公開日2022-06-01
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Allosteric control of Ubp6 and the proteasome via a bidirectional switch.
Nat Commun, 13, 2022
7QFO
DownloadVisualize
BU of 7qfo by Molmil
Human Topoisomerase II Beta ATPase AMPPNP
分子名称: ALANINE, DNA topoisomerase 2-beta, MAGNESIUM ION, ...
著者Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
登録日2021-12-06
公開日2022-05-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
6W8X
DownloadVisualize
BU of 6w8x by Molmil
Cryo-EM of the S. solfataricus pilus
分子名称: pilin
著者Wang, F, Baquero, D.P, Su, Z, Beltran, L.C, Prangishvili, D, Krupovic, M, Egelman, E.H.
登録日2020-03-21
公開日2020-07-08
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献The structures of two archaeal type IV pili illuminate evolutionary relationships.
Nat Commun, 11, 2020

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon