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PDB: 132 件
5U8I
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DNA Polymerase Beta S229L crystallized in PEG 400
分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ...
著者Eckenroth, B.E, Doublie, S.
登録日2016-12-14
公開日2017-04-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta.
Biochemistry, 56, 2017
8SYJ
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Structure of apurinic/apyrimidinic DNA lyase TK0353 from Thermococcus kodakarensis (Iodide crystal form)
分子名称: GLYCEROL, IODIDE ION, SULFATE ION, ...
著者Eckenroth, B.E, Gardner, A.F, Doublie, S.
登録日2023-05-25
公開日2023-12-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.
J.Biol.Chem., 300, 2023
5U8H
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DNA Polymerase Beta G231D crystallized in PEG 400
分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ...
著者Eckenroth, B.E, Doublie, S.
登録日2016-12-14
公開日2017-04-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.155 Å)
主引用文献Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta.
Biochemistry, 56, 2017
1F5A
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BU of 1f5a by Molmil
CRYSTAL STRUCTURE OF MAMMALIAN POLY(A) POLYMERASE
分子名称: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, POLY(A) POLYMERASE, ...
著者Martin, G, Keller, W, Doublie, S.
登録日2000-06-13
公開日2000-09-13
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP.
EMBO J., 19, 2000
6MP0
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BU of 6mp0 by Molmil
Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with the TRP1-M9 peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, TRP1-M9 peptide, Beta-2-microglobulin,H-2 class I histocompatibility antigen, ...
著者Clancy-Thompson, E, Devlin, C.A, Birnbaum, M.E, Dougan, S.K.
登録日2018-10-05
公開日2018-11-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Altered Binding of Tumor Antigenic Peptides to MHC Class I Affects CD8+T Cell-Effector Responses.
Cancer Immunol Res, 6, 2018
6MW4
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BU of 6mw4 by Molmil
Structure of pseudoprotease CspC from Clostridioides difficile
分子名称: Putative germination-specific protease, SULFATE ION
著者Eckenroth, B.E, Doublie, S.
登録日2018-10-29
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献The CspC pseudoprotease regulates germination of Clostridioides difficile spores in response to multiple environmental signals.
Plos Genet., 15, 2019
6MP1
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BU of 6mp1 by Molmil
Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with the mutant TRP1-K8 peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, TRP1-K8 peptide, Beta-2-microglobulin,H-2 class I histocompatibility antigen, ...
著者Clancy-Thompson, E, Devlin, C.A, Birnbaum, M.E, Dougan, S.K.
登録日2018-10-05
公開日2018-11-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.211 Å)
主引用文献Altered Binding of Tumor Antigenic Peptides to MHC Class I Affects CD8+T Cell-Effector Responses.
Cancer Immunol Res, 6, 2018
6GEU
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BU of 6geu by Molmil
Crystal structure of the C230A mutant of human IBA57
分子名称: Putative transferase CAF17, mitochondrial
著者Calderone, V, Ciofi-Baffoni, S, Gourdoupis, S, Banci, L, Nasta, V.
登録日2018-04-27
公開日2019-04-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献IBA57 Recruits ISCA2 to Form a [2Fe-2S] Cluster-Mediated Complex.
J.Am.Chem.Soc., 140, 2018
4YUA
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Glycogen phosphorylase in complex with ellagic acid
分子名称: 2,3,7,8-tetrahydroxychromeno[5,4,3-cde]chromene-5,10-dione, Glycogen phosphorylase, muscle form, ...
著者Kyriakis, E, Kantsadi, L.A, Stravodimos, A.G, Chatzileontiadou, S.M.D, Leonidas, D.D.
登録日2015-03-18
公開日2015-05-13
最終更新日2018-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Natural flavonoids as antidiabetic agents. The binding of gallic and ellagic acids to glycogen phosphorylase b.
Febs Lett., 589, 2015
6QE4
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BU of 6qe4 by Molmil
Re-refinement of 5OLI human IBA57-I3C
分子名称: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, Putative transferase CAF17, mitochondrial
著者Calderone, V, Ciofi-Baffoni, S, Gourdoupis, S, Banci, L, Nasta, V.
登録日2019-01-04
公開日2019-03-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献In-house high-energy-remote SAD phasing using the magic triangle: how to tackle the P1 low symmetry using multiple orientations of the same crystal of human IBA57 to increase the multiplicity.
Acta Crystallogr D Struct Biol, 75, 2019
6QE3
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BU of 6qe3 by Molmil
Re-refinement of 6ESR human IBA57 at 1.75 A resolution
分子名称: Putative transferase CAF17, mitochondrial
著者Calderone, V, Ciofi-Baffoni, S, Gourdoupis, S, Banci, L.
登録日2019-01-04
公開日2019-03-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献In-house high-energy-remote SAD phasing using the magic triangle: how to tackle the P1 low symmetry using multiple orientations of the same crystal of human IBA57 to increase the multiplicity.
Acta Crystallogr D Struct Biol, 75, 2019
6BTE
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BU of 6bte by Molmil
DNA Polymerase Beta I260Q Binary Complex
分子名称: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2017-12-06
公開日2018-09-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res., 46, 2018
6BTF
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BU of 6btf by Molmil
DNA Polymerase Beta I260Q Ternary Complex
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA Downstream Strand, DNA Primer Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2017-12-06
公開日2018-09-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res., 46, 2018
2BZS
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BU of 2bzs by Molmil
Binding of anti-cancer prodrug CB1954 to the activating enzyme NQO2 revealed by the crystal structure of their complex.
分子名称: 5-(AZIRIDIN-1-YL)-2,4-DINITROBENZAMIDE, FLAVIN-ADENINE DINUCLEOTIDE, NRH DEHYDROGENASE [QUINONE] 2, ...
著者Abu Khader, M.M, Heap, J.T, De Matteis, C, Kellam, B, Doughty, S.W, Minton, N, Paoli, M.
登録日2005-08-22
公開日2005-09-23
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of the Anticancer Prodrug Cb1954 to the Activating Enzyme Nqo2 Revealed by the Crystal Structure of Their Complex.
J.Med.Chem., 48, 2005
4M9J
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BU of 4m9j by Molmil
DNA Polymerase Beta E295K Soaked with dUMPNPP
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA Downstream Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2013-08-14
公開日2013-10-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.038 Å)
主引用文献The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4M9L
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BU of 4m9l by Molmil
DNA Polymerase Beta E295K Soaked with dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA Downstream Strand, DNA Primer Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2013-08-14
公開日2013-10-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.091 Å)
主引用文献The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4M9G
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BU of 4m9g by Molmil
DNA Polymerase Beta E295K Binary Complex
分子名称: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2013-08-14
公開日2013-10-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4LT6
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BU of 4lt6 by Molmil
Crystal Structure of human poly(A) polymerase gamma
分子名称: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Poly(A) polymerase gamma
著者Yang, Q, Nausch, L, Martin, G, Keller, W, Doublie, S.
登録日2013-07-23
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Crystal structure of human poly(a) polymerase gamma reveals a conserved catalytic core for canonical poly(a) polymerases.
J.Mol.Biol., 426, 2014
4M9H
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BU of 4m9h by Molmil
DNA Polymerase Beta E295K Soaked with dTTP
分子名称: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2013-08-14
公開日2013-10-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.394 Å)
主引用文献The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4Z5X
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BU of 4z5x by Molmil
Glycogen phosphorylase in complex with gallic acid
分子名称: 3,4,5-trihydroxybenzoic acid, Glycogen phosphorylase, muscle form, ...
著者Kyriakis, E, Kantsadi, L.A, Stravodimos, A.G, Chatzileontiadou, S.M.D, Leonidas, D.D.
登録日2015-04-03
公開日2015-05-13
最終更新日2018-03-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Natural flavonoids as antidiabetic agents. The binding of gallic and ellagic acids to glycogen phosphorylase b.
Febs Lett., 589, 2015
3Q2S
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BU of 3q2s by Molmil
Crystal Structure of CFIm68 RRM/CFIm25 complex
分子名称: Cleavage and polyadenylation specificity factor subunit 5, Cleavage and polyadenylation specificity factor subunit 6
著者Yang, Q, Coseno, M, Gilmartin, G.M, Doublie, S.
登録日2010-12-20
公開日2011-02-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of a Human Cleavage Factor CFI(m)25/CFI(m)68/RNA Complex Provides an Insight into Poly(A) Site Recognition and RNA Looping.
Structure, 19, 2011
4PPX
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BU of 4ppx by Molmil
DNA Polymerase Beta E295K with Spiroiminodihydantoin in Templating Position
分子名称: 5'-D(*CP*CP*GP*AP*CP*(SDH)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*G)-3', ...
著者Eckenroth, B.E, Doublie, S.
登録日2014-02-27
公開日2014-04-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Crystal Structure of DNA Polymerase beta with DNA Containing the Base Lesion Spiroiminodihydantoin in a Templating Position.
Biochemistry, 53, 2014
3Q2T
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BU of 3q2t by Molmil
Crystal Structure of CFIm68 RRM/CFIm25/RNA complex
分子名称: Cleavage and polyadenylation specificity factor subunit 5, Cleavage and polyadenylation specificity factor subunit 6, RNA
著者Yang, Q, Coseno, M, Gilmartin, G.M, Doublie, S.
登録日2010-12-20
公開日2011-02-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.061 Å)
主引用文献Crystal Structure of a Human Cleavage Factor CFI(m)25/CFI(m)68/RNA Complex Provides an Insight into Poly(A) Site Recognition and RNA Looping.
Structure, 19, 2011
8TH9
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Structure of mammalian NEIL2 from Monodelphis domestica in complex with THF-containing DNA
分子名称: DIMETHYL SULFOXIDE, DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'), ...
著者Eckenroth, B.E, Doublie, S.
登録日2023-07-14
公開日2023-11-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural and biochemical insights into NEIL2's preference for abasic sites.
Nucleic Acids Res., 51, 2023
3BHO
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Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im with Ap4A
分子名称: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Cleavage and polyadenylation specificity factor subunit 5
著者Coseno, M, Doublie, S.
登録日2007-11-28
公開日2008-02-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the 25 kDa subunit of human cleavage factor Im.
Nucleic Acids Res., 36, 2008

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