Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 96 results

3C0J
DownloadVisualize
BU of 3c0j by Molmil
Structure of E. coli dihydrodipicolinate synthase complexed with hydroxypyruvate
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, PHOSPHATE ION, ...
Authors:Dobson, R.C.J.
Deposit date:2008-01-21
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conserved main-chain peptide distortions: A proposed role for Ile203 in catalysis by dihydrodipicolinate synthase
Protein Sci., 17, 2008
2PUR
DownloadVisualize
BU of 2pur by Molmil
Structure of dihydrodipicolinate synthase mutant Thr44Ser at 1.7 A.
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, PHOSPHATE ION, ...
Authors:Dobson, R.C.J, Jameson, G.B, Gerrard, J.A.
Deposit date:2007-05-09
Release date:2008-05-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Specificity versus catalytic potency: The role of threonine 44 in Escherichia coli dihydrodipicolinate synthase mediated catalysis.
Biochimie, 91, 2009
1YXD
DownloadVisualize
BU of 1yxd by Molmil
Structure of E. coli dihydrodipicolinate synthase bound with allosteric inhibitor (S)-lysine to 2.0 A
Descriptor: CHLORIDE ION, LYSINE, POTASSIUM ION, ...
Authors:Dobson, R.C.J, Griffin, M.D.W, Jameson, G.B, Gerrard, J.A.
Deposit date:2005-02-20
Release date:2005-08-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance.
Acta Crystallogr.,Sect.D, 61, 2005
1YXC
DownloadVisualize
BU of 1yxc by Molmil
Structure of E. coli dihydrodipicolinate synthase to 1.9 A
Descriptor: CHLORIDE ION, POTASSIUM ION, dihydrodipicolinate synthase
Authors:Dobson, R.C.J, Griffin, M.D.W, Jameson, G.B, Gerrard, J.A.
Deposit date:2005-02-20
Release date:2005-08-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance.
Acta Crystallogr.,Sect.D, 61, 2005
2A6L
DownloadVisualize
BU of 2a6l by Molmil
Dihydrodipicolinate synthase (E. coli)- mutant R138H
Descriptor: Dihydrodipicolinate synthase, POTASSIUM ION
Authors:Dobson, R.C, Devenish, S.R, Turner, L.A, Clifford, V.R, Pearce, F.G, Jameson, G.B, Gerrard, J.A.
Deposit date:2005-07-03
Release date:2005-10-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Role of Arginine 138 in the Catalysis and Regulation of Escherichia coli Dihydrodipicolinate Synthase.
Biochemistry, 44, 2005
2A6N
DownloadVisualize
BU of 2a6n by Molmil
Dihydrodipicolinate synthase (E. coli)- mutant R138A
Descriptor: Dihydrodipicolinate synthase, POTASSIUM ION
Authors:Dobson, R.C, Devenish, S.R, Turner, L.A, Clifford, V.R, Pearce, F.G, Jameson, G.B, Gerrard, J.A.
Deposit date:2005-07-03
Release date:2005-10-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Role of Arginine 138 in the Catalysis and Regulation of Escherichia coli Dihydrodipicolinate Synthase.
Biochemistry, 44, 2005
1S5T
DownloadVisualize
BU of 1s5t by Molmil
Crystal Structure Analysis of a mutant of DIHYDRODIPICOLINATE SYNTHASE--residue thr44 to val44
Descriptor: Dihydrodipicolinate synthase
Authors:Dobson, R.C.J, Valegard, K, Gerrard, J.A.
Deposit date:2004-01-21
Release date:2004-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of Three Site-directed Mutants of Escherichia coli Dihydrodipicolinate Synthase: Further Evidence for a Catalytic Triad
J.MOL.BIOL., 338, 2004
1S5V
DownloadVisualize
BU of 1s5v by Molmil
Crystal Structure Analysis of a mutant of DIHYDRODIPICOLINATE SYNTHASE--residue Tyr107 to Phe107
Descriptor: Dihydrodipicolinate synthase
Authors:Dobson, R.C.J, Valegard, K, Gerrard, J.A.
Deposit date:2004-01-21
Release date:2004-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Crystal Structure of Three Site-directed Mutants of Escherichia coli Dihydrodipicolinate Synthase: Further Evidence for a Catalytic Triad
J.MOL.BIOL., 338, 2004
1S5W
DownloadVisualize
BU of 1s5w by Molmil
Crystal Structure Analysis of a mutant of DIHYDRODIPICOLINATE SYNTHASE--residue Tyr133 to Phe133
Descriptor: Dihydrodipicolinate synthase
Authors:Dobson, R.C.J, Valegard, K, Gerrard, J.A.
Deposit date:2004-01-21
Release date:2004-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The Crystal Structure of Three Site-directed Mutants of Escherichia coli Dihydrodipicolinate Synthase: Further Evidence for a Catalytic Triad
J.MOL.BIOL., 338, 2004
3QGU
DownloadVisualize
BU of 3qgu by Molmil
L,L-Diaminopimelate aminotransferase from Chlamydomonas reinhardtii
Descriptor: AZIDE ION, GLYCEROL, LL-diaminopimelate aminotransferase, ...
Authors:Dobson, R.C.J, Giron, I, Hudson, A.O.
Deposit date:2011-01-25
Release date:2011-06-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:L,L-Diaminopimelate Aminotransferase from Chlamydomonas reinhardtii: A Target for Algaecide Development
Plos One, 6, 2011
3DU0
DownloadVisualize
BU of 3du0 by Molmil
E. coli dihydrodipicolinate synthase with first substrate, pyruvate, bound in active site
Descriptor: CHLORIDE ION, Dihydrodipicolinate synthase, GLYCEROL, ...
Authors:Dobson, R.C.J, Devenish, S.R.A, Gerrard, J.A, Jameson, G.B.
Deposit date:2008-07-16
Release date:2008-11-18
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:The high-resolution structure of dihydrodipicolinate synthase from Escherichia coli bound to its first substrate, pyruvate.
Acta Crystallogr.,Sect.F, 64, 2008
3DAQ
DownloadVisualize
BU of 3daq by Molmil
Crystal structure of dihydrodipicolinate synthase from methicillin-resistant Staphylococcus aureus
Descriptor: CHLORIDE ION, Dihydrodipicolinate synthase, GLYCEROL
Authors:Dobson, R.C.J, Burgess, B.R, Jameson, G.B, Gerrard, J.A, Parker, M.W, Perugini, M.A.
Deposit date:2008-05-29
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure and evolution of a novel dimeric enzyme from a clinically-important bacterial pathogen.
J.Biol.Chem., 2008
3I7Q
DownloadVisualize
BU of 3i7q by Molmil
Dihydrodipicolinate synthase mutant - K161A
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, PHOSPHATE ION, ...
Authors:Dobson, R.C.J, Jameson, G.B, Gerrard, J.A, Soares da Costa, T.P.
Deposit date:2009-07-08
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?
Biochimie, 92, 2010
3I7R
DownloadVisualize
BU of 3i7r by Molmil
Dihydrodipicolinate synthase - K161R
Descriptor: CHLORIDE ION, Dihydrodipicolinate synthase, GLYCEROL, ...
Authors:Dobson, R.C.J, Jameson, G.B, Gerrard, J.A, Soares da Costa, T.P.
Deposit date:2009-07-08
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?
Biochimie, 92, 2010
3I7S
DownloadVisualize
BU of 3i7s by Molmil
Dihydrodipicolinate synthase mutant - K161A - with the substrate pyruvate bound in the active site.
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, PHOSPHATE ION, ...
Authors:Dobson, R.C.J, Jameson, G.B, Gerrard, J.A, Soares da Costa, T.P.
Deposit date:2009-07-08
Release date:2010-04-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?
Biochimie, 92, 2010
3IRD
DownloadVisualize
BU of 3ird by Molmil
Structure of dihydrodipicolinate synthase from Clostridium botulinum
Descriptor: CHLORIDE ION, D-MALATE, Dihydrodipicolinate synthase, ...
Authors:Dobson, R.C.J, Atkinson, S, Perugini, M.A.
Deposit date:2009-08-22
Release date:2009-09-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structure of Cbot-DHDPS
To be Published
8B01
DownloadVisualize
BU of 8b01 by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Descriptor: DECANE, DOCOSANE, HEXANE, ...
Authors:Davies, J.S, North, R.A, Dobson, R.C.J.
Deposit date:2022-09-06
Release date:2023-03-15
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 14, 2023
8GEK
DownloadVisualize
BU of 8gek by Molmil
Dihydrodipicolinate synthase with pyruvate from Candidatus Liberibacter solanacearum
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase
Authors:Gilkes, J.M, Frampton, R.A, Board, A, Sheen, C.R, Smith, G.R, Dobson, R.C.J.
Deposit date:2023-03-06
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Dihydrodipicolinate synthase with pyruvate from the plant pathogen, Candidatus Liberibacter solanacearum
To Be Published
4GRS
DownloadVisualize
BU of 4grs by Molmil
Crystal structure of a chimeric DAH7PS
Descriptor: Phospho-2-dehydro-3-deoxyheptonate aldolase, 2-dehydro-3-deoxyphosphoheptonate aldolase, TYROSINE
Authors:Cross, P.J, Allison, T.M, Dobson, R.C.J, Jameson, G.B, Parker, E.J.
Deposit date:2012-08-26
Release date:2013-02-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Engineering allosteric control to an unregulated enzyme by transfer of a regulatory domain
Proc.Natl.Acad.Sci.USA, 110, 2013
5DPR
DownloadVisualize
BU of 5dpr by Molmil
Crystal structure of PLEKHM1 LIR-fused human LC3A_2-121
Descriptor: Pleckstrin homology domain-containing family M member 1,Microtubule-associated proteins 1A/1B light chain 3A
Authors:Ravichandran, A.C, Suzuki, H, Dobson, R.C.J.
Deposit date:2015-09-14
Release date:2016-09-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional analysis of the GABARAP interaction motif (GIM).
EMBO Rep., 18, 2017
7QHA
DownloadVisualize
BU of 7qha by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in amphipol
Descriptor: Megabody c7HopQ, Putative TRAP-type C4-dicarboxylate transport system, large permease component, ...
Authors:North, R.A, Davies, J.S, Morado, D, Dobson, R.C.J.
Deposit date:2021-12-11
Release date:2022-12-21
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 14, 2023
7T3E
DownloadVisualize
BU of 7t3e by Molmil
Structure of the sialic acid bound Tripartite ATP-independent Periplasmic (TRAP) periplasmic component SiaP from Photobacterium profundum
Descriptor: N-acetyl-beta-neuraminic acid, SULFATE ION, TRAP-type C4-dicarboxylate transport system, ...
Authors:Davies, J.S, Currie, M.J, North, R.A, Dobson, R.C.J.
Deposit date:2021-12-07
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 14, 2023
6O15
DownloadVisualize
BU of 6o15 by Molmil
Crystal structure of a putative oxidoreductase YjhC from Escherichia coli in complex with NAD(H)
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, Uncharacterized oxidoreductase YjhC
Authors:Horne, C.R, Kind, L, Davies, J.S, Dobson, R.C.
Deposit date:2019-02-17
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:On the structure and function of Escherichia coli YjhC: An oxidoreductase involved in bacterial sialic acid metabolism.
Proteins, 88, 2020
4YNG
DownloadVisualize
BU of 4yng by Molmil
Twinned pyruvate kinase from E. coli in the T-state
Descriptor: Pyruvate kinase I, SULFATE ION
Authors:Donovan, K.A, Dobson, R.C.J.
Deposit date:2015-03-10
Release date:2015-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Grappling with anisotropic data, pseudo-merohedral twinning and pseudo-translational noncrystallographic symmetry: a case study involving pyruvate kinase.
Acta Crystallogr D Struct Biol, 72, 2016
4TLJ
DownloadVisualize
BU of 4tlj by Molmil
Ultra-high resolution crystal structure of caprine Beta-lactoglobulin
Descriptor: 1,4-BUTANEDIOL, Beta-lactoglobulin
Authors:Crowther, J.M, Jameson, G.B, Suzuki, H, Dobson, R.C.J.
Deposit date:2014-05-30
Release date:2014-06-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Ultra-high resolution crystal structure of recombinant caprine beta-lactoglobulin.
Febs Lett., 588, 2014

 

1234>

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon