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PDB: 144 件
7YKN
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Crystal structure of (6-4) photolyase from Vibrio cholerae
分子名称: 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, Cryptochrome/photolyase family protein, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Cakilkaya, B, Kavakli, I.H, DeMirci, H.
登録日2022-07-23
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The crystal structure of Vibrio cholerae (6-4) photolyase reveals interactions with cofactors and a DNA-binding region.
J.Biol.Chem., 299, 2023
9IIE
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BU of 9iie by Molmil
Cryogenic Temperature Crystal Structure of Fc Fragment of Human IgG1 from Biosimilar VEGF-Trap
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
著者Destan, E, DeMirci, H.
登録日2024-06-20
公開日2024-08-07
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Cryogenic Temperature Crystal Structure of Fc Fragment of Human IgG1 from Biosimilar VEGF-Trap
To Be Published
8Z4B
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BU of 8z4b by Molmil
Crystal structure of LysB22-AspB28 insulin analog at ambient structure
分子名称: CHLORIDE ION, Insulin A chain, Insulin B chain, ...
著者Ayan, E, Demirci, H.
登録日2024-04-17
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of LysB22-AspB28 insulin analog at ambient structure
To Be Published
8X34
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BU of 8x34 by Molmil
Human Kelch like-ECH Associated Protein 1 (Keap1)
分子名称: Kelch-like ECH-associated protein 1
著者Yilmaz, M, Gul, M, DeMirci, H.
登録日2023-11-11
公開日2023-11-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Human KEAP1 Kelch domain at ambient temperature
To Be Published
8X6P
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Isomerase Protein
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, SULFATE ION
著者Guven, O, Demirci, H.
登録日2023-11-21
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Isomerase Protein
To Be Published
8WZU
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BU of 8wzu by Molmil
4-hydroxybutyryl-CoA Synthetase (ADP-forming) from Nitrosopumilus maritimus.
分子名称: 4-hydroxybutyrate--CoA ligase [ADP-forming], SULFATE ION
著者Johnson, J, Demirci, H.
登録日2023-11-02
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of 4-hydroxybutyryl CoA synthetase (ADP-forming): A Key Enzyme in the Thaumarchaeal Hydroxypropionate/Hydroxybutyrate cycle.
To Be Published
8HZ2
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Tumor Necrosis Factor Receptor Associated Factor 6 (TRAF6) N-terminal Domain
分子名称: TNF receptor-associated factor 6, ZINC ION
著者Guven, O, Ciftci, H, DeMirci, H.
登録日2023-01-07
公開日2023-01-25
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Tumor Necrosis Factor Receptor Associated Factor 6 (TRAF6) N-terminal Domain
To Be Published
8HTY
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BU of 8hty by Molmil
Candida boidinii Formate Dehydrogenase Crystal Structure at 1.4 Angstrom Resolution
分子名称: Formate dehydrogenase, SULFATE ION
著者Gul, M, Yuksel, B, Bulut, H, DeMirci, H.
登録日2022-12-22
公開日2023-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
8IVJ
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Candida boidinii Formate Dehydrogenase V120T Mutant
分子名称: Formate dehydrogenase
著者Gul, M, Yuksel, B, Bulut, H, DeMirci, H.
登録日2023-03-28
公開日2023-05-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
8IQ7
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Ambient Temperature Crystal Structure of Candida boidinii Formate Dehydrogenase
分子名称: Formate dehydrogenase
著者Gul, M, DeMirci, H.
登録日2023-03-16
公開日2023-03-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
6MPI
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BU of 6mpi by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, DeMirci, H, Agris, P.F.
登録日2018-10-07
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
J.Mol.Biol., 432, 2020
6MKN
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BU of 6mkn by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, DeMirci, H, Agris, P.F.
登録日2018-09-25
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.46 Å)
主引用文献A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
J.Mol.Biol., 432, 2020
6MPF
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BU of 6mpf by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, DeMirci, H, Agris, P.F.
登録日2018-10-05
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
J.Mol.Biol., 432, 2020
8HZ1
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BU of 8hz1 by Molmil
Ambient temperature crystal structure of Escherichia coli CyaY
分子名称: Iron-sulfur cluster assembly protein CyaY
著者Shafiei, A, DeMirci, H.
登録日2023-01-07
公開日2023-01-25
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ambient temperature crystal structure of Escherichia coli CyaY
To Be Published
8IWI
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BU of 8iwi by Molmil
Cryogenic Temperature Crystal Structure of Escherichia coli CyaY protein at pH 5
分子名称: Iron-sulfur cluster assembly protein CyaY
著者Shafiei, A, DeMirci, H.
登録日2023-03-30
公開日2023-05-10
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Cryogenic Temperature Crystal Structure of Escherichia coli CyaY protein at pH 5
To Be Published
8IVK
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BU of 8ivk by Molmil
Cryogenic temperature crystal structure of Escherichia coli CyaY
分子名称: Iron-sulfur cluster assembly protein CyaY
著者Shafiei, A, DeMirci, H.
登録日2023-03-28
公開日2023-05-10
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Cryogenic temperature crystal structure of Escherichia coli CyaY
To Be Published
6DTI
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BU of 6dti by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
分子名称: 16s rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, DeMirci, H, Agris, P.F.
登録日2018-06-16
公開日2019-04-24
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.54 Å)
主引用文献A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
J.Mol.Biol., 432, 2020
4GKK
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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, Murphy IV, F.V, Spears, J.L, Demirci, H, Agris, P.F.
登録日2012-08-11
公開日2013-06-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013
4GKJ
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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, Murphy IV, F.V, Spears, J.L, Demirci, H, Agris, P.F.
登録日2012-08-11
公開日2013-06-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.298 Å)
主引用文献Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013

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