Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 788 results

7OFX
DownloadVisualize
BU of 7ofx by Molmil
Crystal structure of a GH31 family sulfoquinovosidase mutant D455N from Agrobacterium tumefaciens in complex with sulfoquinovosyl glycerol (SQGro)
Descriptor: Alpha-glucosidase yihQ, [(2S,3S,4S,5R,6S)-6-[(2R)-2,3-bis(oxidanyl)propoxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic acid
Authors:Sharma, M, Davies, G.J.
Deposit date:2021-05-05
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
2OVW
DownloadVisualize
BU of 2ovw by Molmil
ENDOGLUCANASE I COMPLEXED WITH CELLOBIOSE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDOGLUCANASE I, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Sulzenbacher, G, Davies, G.J, Schulein, M.
Deposit date:1997-04-04
Release date:1998-04-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the endoglucanase I from Fusarium oxysporum: native, cellobiose, and 3,4-epoxybutyl beta-D-cellobioside-inhibited forms, at 2.3 A resolution.
Biochemistry, 36, 1997
6GDT
DownloadVisualize
BU of 6gdt by Molmil
Crystal structure of exo-glucosidase/glucosaminidase VC0615 from Vibrio Cholerae
Descriptor: 1,2-ETHANEDIOL, Endoglucanase-related protein
Authors:Wu, L, Davies, G.J.
Deposit date:2018-04-24
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structure of the GH9 glucosidase/glucosaminidase from Vibrio cholerae.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6GXV
DownloadVisualize
BU of 6gxv by Molmil
Amylase in complex with acarbose
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, A-amylase, CALCIUM ION, ...
Authors:Agirre, J, Moroz, O, Meier, S, Brask, J, Munch, A, Hoff, T, Andersen, C, Wilson, K.S, Davies, G.J.
Deposit date:2018-06-27
Release date:2019-01-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The structure of the AliC GH13 alpha-amylase from Alicyclobacillus sp. reveals the accommodation of starch branching points in the alpha-amylase family.
Acta Crystallogr D Struct Biol, 75, 2019
6T6G
DownloadVisualize
BU of 6t6g by Molmil
Bacteroides salyersiae GH164 beta-mannosidase in complex with noeuromycin
Descriptor: (2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-HYDROXYMETHYL-PIPERIDINE, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-18
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6T75
DownloadVisualize
BU of 6t75 by Molmil
Bacteroides salyersiae GH164 beta-mannosidase 2-deoxy-2-fluoro-beta-D-mannosyl enzyme intermediate
Descriptor: 2-deoxy-2-fluoro-alpha-D-mannopyranose, CHLORIDE ION, Glyco_hydro_42M domain-containing protein
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-21
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
5OHS
DownloadVisualize
BU of 5ohs by Molmil
A GH31 family sulfoquinovosidase mutant D455N in complex with pNPSQ
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 4-nitrophenyl alpha-D-6-sulfoquinovoside, ...
Authors:Jin, Y, Williams, S.J, Goddard-Borger, E, Davies, G.J.
Deposit date:2017-07-18
Release date:2018-08-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and Biochemical Insights into the Function and Evolution of Sulfoquinovosidases.
ACS Cent Sci, 4, 2018
7OVA
DownloadVisualize
BU of 7ova by Molmil
Crystal structure of an AA9 LPMO
Descriptor: (2S)-2-hydroxybutanedioic acid, COPPER (II) ION, Endoglucanase, ...
Authors:Males, A, Correa, T.L.R, Murakami, M.T, Walton, P.H, Davies, G.J.
Deposit date:2021-06-14
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of an AA9 LPMO
To Be Published
6T5O
DownloadVisualize
BU of 6t5o by Molmil
Bacteroides salyersiae GH164 beta-mannosidase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, D(-)-TARTARIC ACID, ...
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-16
Release date:2020-01-01
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6T7G
DownloadVisualize
BU of 6t7g by Molmil
Bacteroides salyersiae GH164 beta-mannosidase in complex with mannoimidazole
Descriptor: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-21
Release date:2019-12-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6HZY
DownloadVisualize
BU of 6hzy by Molmil
Crystal structure of a bacterial fucosidase with inhibitor FucPUG
Descriptor: 1,2-ETHANEDIOL, Alpha-L-fucosidase, SULFATE ION, ...
Authors:Wu, L, Davies, G.J, Stubbs, K.A, Coyle, T, Debowski, A.W.
Deposit date:2018-10-24
Release date:2019-02-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthetic and Crystallographic Insight into Exploiting sp2Hybridization in the Development of alpha-l-Fucosidase Inhibitors.
Chembiochem, 20, 2019
5FOO
DownloadVisualize
BU of 5foo by Molmil
6-phospho-beta-glucosidase
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-PHOSPHO-BETA-D GLYCOSIDASE, ...
Authors:Jin, Y, Kwan, D.H, Withers, S.G, Davies, G.J.
Deposit date:2015-11-24
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Chemoenzymatic Synthesis of 6-Phospho-Cyclophellitol as a Novel Probe of 6-Phospho-Beta-Glucosidases.
FEBS Lett., 590, 2016
6HA9
DownloadVisualize
BU of 6ha9 by Molmil
Structure of an endo-Xyloglucanase from Cellvibrio japonicus complexed with XXXG(2F)-beta-DNP
Descriptor: Cellulase, putative, cel5D, ...
Authors:Offen, W.A, Davies, G.J.
Deposit date:2018-08-07
Release date:2018-10-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Synthesis and application of a highly branched, mechanism-based 2-deoxy-2-fluoro-oligosaccharide inhibitor of endo-xyloglucanases.
Org. Biomol. Chem., 16, 2018
7PM4
DownloadVisualize
BU of 7pm4 by Molmil
Cryo-EM structures of human fucosidase FucA1 reveal insight into substate recognition and catalysis.
Descriptor: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Tissue alpha-L-fucosidase
Authors:Armstrong, Z, Meek, R.W, Wu, L, Blaza, J.N, Davies, G.J.
Deposit date:2021-09-01
Release date:2022-08-10
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (2.49 Å)
Cite:Cryo-EM structures of human fucosidase FucA1 reveal insight into substrate recognition and catalysis.
Structure, 30, 2022
7PLS
DownloadVisualize
BU of 7pls by Molmil
Cryo-EM structures of human fucosidase FucA1 reveal insight into substate recognition and catalysis.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tissue alpha-L-fucosidase
Authors:Armstrong, Z, Meek, R.W, Wu, L, Blaza, J.N, Davies, G.J.
Deposit date:2021-09-01
Release date:2022-08-10
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (2.49 Å)
Cite:Cryo-EM structures of human fucosidase FucA1 reveal insight into substrate recognition and catalysis.
Structure, 30, 2022
6HAA
DownloadVisualize
BU of 6haa by Molmil
Structure of a covalent complex of endo-Xyloglucanase from Cellvibrio japonicus after reacting with XXXG(2F)-beta-DNP
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cellulase, putative, ...
Authors:Offen, W, Davies, G.J.
Deposit date:2018-08-07
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthesis and application of a highly branched, mechanism-based 2-deoxy-2-fluoro-oligosaccharide inhibitor of endo-xyloglucanases.
Org. Biomol. Chem., 16, 2018
6HPF
DownloadVisualize
BU of 6hpf by Molmil
Structure of Inactive E165Q mutant of fungal non-CBM carrying GH26 endo-b-mannanase from Yunnania penicillata in complex with alpha-62-61-di-galactosyl-mannotriose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, CHLORIDE ION, ...
Authors:von Freiesleben, P, Moroz, O.V, Blagova, E, Wiemann, M, Spodsberg, N, Agger, J.W, Davies, G.J, Wilson, K.S, Stalbrand, H, Meyer, A.S, Krogh, K.B.R.M.
Deposit date:2018-09-20
Release date:2019-03-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure and substrate interactions of an unusual fungal non-CBM carrying GH26 endo-beta-mannanase from Yunnania penicillata.
Sci Rep, 9, 2019
5G0Q
DownloadVisualize
BU of 5g0q by Molmil
beta-glucuronidase with an activity-based probe (N-alkyl cyclophellitol aziridine) bound
Descriptor: (1R,2S,3R,4S,5S,6R)-7-(8-AZIDOOCTYL)-3,4,5-TRIHYDROXY-, BETA-GLUCURONIDASE, GLYCEROL
Authors:Jin, Y, Wu, L, Jiang, J.B, Overkleeft, H.S, Davies, G.J.
Deposit date:2016-03-22
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Activity-based probes for functional interrogation of retaining beta-glucuronidases.
Nat. Chem. Biol., 13, 2017
6I6M
DownloadVisualize
BU of 6i6m by Molmil
Papaver somniferum O-methyltransferase 1
Descriptor: (13aS)-3,10-dimethoxy-5,8,13,13a-tetrahydro-6H-isoquino[3,2-a]isoquinoline-2,9-diol, O-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cabry, M.P, Offen, W.A, Winzer, T, Li, Y, Graham, I.A, Davies, G.J, Saleh, P.
Deposit date:2018-11-15
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation
Acs Catalysis, 2019
6I6K
DownloadVisualize
BU of 6i6k by Molmil
Papaver somniferum O-methyltransferase 1
Descriptor: (13aS)-3,10-dimethoxy-5,8,13,13a-tetrahydro-6H-isoquino[3,2-a]isoquinoline-2,9-diol, O-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cabry, M.P, Offen, W.A, Winzer, T, Li, Y, Graham, I.A, Davies, G.J, Saleh, P.
Deposit date:2018-11-15
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation
Acs Catalysis, 2019
6I6L
DownloadVisualize
BU of 6i6l by Molmil
Papaver somniferum O-methyltransferase 1
Descriptor: O-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, Tetrahydrocolumbamine
Authors:Cabry, M.P, Offen, W.A, Winzer, T, Li, Y, Graham, I.A, Davies, G.J, Saleh, P.
Deposit date:2018-11-15
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation
Acs Catalysis, 2019
6I6N
DownloadVisualize
BU of 6i6n by Molmil
Papaver somniferum O-methyltransferase 1
Descriptor: (13aS)-3,10-dimethoxy-5,8,13,13a-tetrahydro-6H-isoquino[3,2-a]isoquinoline-2,9-diol, O-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cabry, M.P, Offen, W.A, Winzer, T, Li, Y, Graham, I.A, Davies, G.J, Saleh, P.
Deposit date:2018-11-15
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation
Acs Catalysis, 2019
1H6M
DownloadVisualize
BU of 1h6m by Molmil
Covalent glycosyl-enzyme intermediate of hen egg white lysozyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-glucopyranose, LYSOZYME C, SODIUM ION
Authors:Vocadlo, D.J, Davies, G.J, Laine, R, Withers, S.G.
Deposit date:2001-06-19
Release date:2001-08-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Catalysis by Hen Egg-White Lysozyme Proceeds Via a Covalent Intermediate
Nature, 412, 2001
3ZUD
DownloadVisualize
BU of 3zud by Molmil
THERMOASCUS GH61 ISOZYME A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Otten, H, Quinlan, R.J, Sweeney, M.D, Poulsen, J.-C.N, Johansen, K.S, Krogh, K.B.R.M, Joergensen, C.I, Tovborg, M, Anthonsen, A, Tryfona, T, Walter, C.P, Dupree, P, Xu, F, Davies, G.J, Walton, P.H, Lo Leggio, L.
Deposit date:2011-07-18
Release date:2011-09-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Insights Into the Oxidative Degradation of Cellulose by a Copper Metalloenzyme that Exploits Biomass Components.
Proc.Natl.Acad.Sci.USA, 108, 2011
3ZSE
DownloadVisualize
BU of 3zse by Molmil
3D Structure of a thermophilic family GH11 xylanase from Thermobifida fusca
Descriptor: 1,2-ETHANEDIOL, ENDO-1,4-BETA-XYLANASE, beta-D-xylopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-xylopyranose
Authors:Lammerts van Bueren, A, Otani, S, Friis, E.P, S Wilson, K, Davies, G.J.
Deposit date:2011-06-27
Release date:2012-02-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Three-Dimensional Structure of a Thermophilic Family Gh11 Xylanase from Thermobifida Fusca.
Acta Crystallogr.,Sect.F, 68, 2012

220472

数据于2024-05-29公开中

PDB statisticsPDBj update infoContact PDBjnumon