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PDB: 85 results

5XFU
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Domain swapped dimer crystal structure of loop1 deletion mutant in Single-chain Monellin
Descriptor: Monellin chain B,Monellin chain A
Authors:Surana, P, Nandwani, N, Udgaonkar, J, Gosavi, S, Das, R.
Deposit date:2017-04-11
Release date:2017-07-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Amino-acid composition after loop deletion drives domain swapping
Protein Sci., 26, 2017
5XQM
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BU of 5xqm by Molmil
NMR solution structure of SMO1, Sumo homologue in Caenorhabditis elegans
Descriptor: Small ubiquitin-related modifier
Authors:Gowda, C.M, Surana, P, Das, R.
Deposit date:2017-06-07
Release date:2017-11-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans
PLoS ONE, 12, 2017
7C1M
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BU of 7c1m by Molmil
Complex structure of tyrosinated alpha-tubulin carboxy-terminal peptide and A1aY1 binder
Descriptor: Carboxy-terminal peptide from tyrosinated alpha-tubulin, Nanobody binder from SSO7d library
Authors:Kesarwani, S, Reddy, P.P, Sirajuddin, M, Das, R.
Deposit date:2020-05-05
Release date:2020-09-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Genetically encoded live-cell sensor for tyrosinated microtubules.
J.Cell Biol., 219, 2020
6DVK
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BU of 6dvk by Molmil
Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program - construct 6 (miniTTR 6)
Descriptor: COBALT (II) ION, MAGNESIUM ION, RNA (95-MER)
Authors:Eiler, D.R, Yesselman, J.D, Costantino, D.A, Das, R, Kieft, J.S.
Deposit date:2018-06-24
Release date:2019-06-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Computational design of three-dimensional RNA structure and function.
Nat Nanotechnol, 14, 2019
6J4I
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BU of 6j4i by Molmil
A conserved and buried edge-to-face aromatic interaction in SUMO is vital for the SUMO pathway
Descriptor: Small ubiquitin-related modifier 1
Authors:Chatterjee, K.S, Das, R.
Deposit date:2019-01-09
Release date:2019-03-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A conserved and buried edge-to-face aromatic interaction in small ubiquitin-like modifier (SUMO) has a role in SUMO stability and function.
J.Biol.Chem., 294, 2019
6K5R
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BU of 6k5r by Molmil
Complex of SUMO2 with Phosphorylated viral SIM IE2
Descriptor: ASP-THR-ALA-GLY-CYS-ILE-VAL-ILE-SEP-ASP-SEP-GLU, Small ubiquitin-related modifier 3
Authors:Chatterjee, K.S, Das, R.
Deposit date:2019-05-30
Release date:2019-08-07
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:Casein kinase-2-mediated phosphorylation increases the SUMO-dependent activity of the cytomegalovirus transactivator IE2.
J.Biol.Chem., 294, 2019
6JXV
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BU of 6jxv by Molmil
SUMO1 bound to phosphorylated SLS4-SIM peptide from ICP0
Descriptor: Phosphorylated SLS4-SIM from ubiquitin E3 ligase ICP0, Small ubiquitin-related modifier
Authors:Hembram, D.S.S, Negi, H, Shet, D, Das, R.
Deposit date:2019-04-25
Release date:2020-02-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Viral SUMO-Targeted Ubiquitin Ligase ICP0 is Phosphorylated and Activated by Host Kinase Chk2.
J.Mol.Biol., 432, 2020
6JXU
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BU of 6jxu by Molmil
SUMO1 bound to SLS4-SIM peptide from ICP0
Descriptor: Small ubiquitin-related modifier, viral protein
Authors:Hembram, D.S.S, Negi, H, Shet, D, Das, R.
Deposit date:2019-04-25
Release date:2020-02-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Viral SUMO-Targeted Ubiquitin Ligase ICP0 is Phosphorylated and Activated by Host Kinase Chk2.
J.Mol.Biol., 432, 2020
6KNA
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BU of 6kna by Molmil
Viral Ubiquitin from Autographa californica Nucleo Polyhedrosis Virus
Descriptor: Viral ubiquitin
Authors:Negi, H, Reddy, P.P, Das, R.
Deposit date:2019-08-05
Release date:2020-06-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes.
Biochem.J., 477, 2020
6JXW
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BU of 6jxw by Molmil
Complex of SUMO2 bound SLS4 from ICP0.
Descriptor: SLS4-SIM from Ubiquitin E3 ligase ICP0, Small ubiquitin-related modifier 2
Authors:Hembram, D.S.S, Negi, H, Shet, D, Das, R.
Deposit date:2019-04-25
Release date:2020-02-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Viral SUMO-Targeted Ubiquitin Ligase ICP0 is Phosphorylated and Activated by Host Kinase Chk2.
J.Mol.Biol., 432, 2020
6JXX
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BU of 6jxx by Molmil
SUMO2 bound to phosphorylated SLS4-SIM peptide from ICP0
Descriptor: Phosphorylated SLS4 from E3 ubiquitin ligase ICP0, Small ubiquitin-related modifier 2
Authors:Hembram, D.S.S, Negi, H, Shet, D, Das, R.
Deposit date:2019-04-25
Release date:2020-02-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Viral SUMO-Targeted Ubiquitin Ligase ICP0 is Phosphorylated and Activated by Host Kinase Chk2.
J.Mol.Biol., 432, 2020
6MJ0
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BU of 6mj0 by Molmil
Crystal structure of the complete turnip yellow mosaic virus 3'UTR
Descriptor: RNA (101-MER)
Authors:Hartwick, E.W, Costantino, D.A, MacFadden, A, Nix, J.C, Tian, S, Das, R, Kieft, J.S.
Deposit date:2018-09-20
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels.
Nat Commun, 9, 2018
7XSN
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BU of 7xsn by Molmil
Native Tetrahymena ribozyme conformation
Descriptor: RNA (387-MER)
Authors:Li, S, Palo, M, Pintilie, G, Zhang, X, Su, Z, Kappel, K, Chiu, W, Zhang, K, Das, R.
Deposit date:2022-05-14
Release date:2022-08-03
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XSM
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BU of 7xsm by Molmil
Misfolded Tetrahymena ribozyme conformation 3
Descriptor: RNA (388-MER)
Authors:Li, S, Palo, M, Pintilie, G, Zhang, X, Su, Z, Kappel, K, Chiu, W, Zhang, K, Das, R.
Deposit date:2022-05-14
Release date:2022-08-03
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (4.01 Å)
Cite:Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XSL
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BU of 7xsl by Molmil
Misfolded Tetrahymena ribozyme conformation 2
Descriptor: RNA (388-MER)
Authors:Li, S, Palo, M, Pintilie, G, Zhang, X, Su, Z, Kappel, K, Chiu, W, Zhang, K, Das, R.
Deposit date:2022-05-14
Release date:2022-08-03
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XSK
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BU of 7xsk by Molmil
Misfolded Tetrahymena ribozyme conformation 1
Descriptor: RNA (388-MER)
Authors:Li, S, Palo, M, Pintilie, G, Zhang, X, Su, Z, Kappel, K, Chiu, W, Zhang, K, Das, R.
Deposit date:2022-05-14
Release date:2022-08-03
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM.
Proc.Natl.Acad.Sci.USA, 119, 2022
5CNO
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BU of 5cno by Molmil
Crystal structure of the EGFR kinase domain mutant V924R
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kovacs, E, Das, R, Mirza, A, Jura, N, Barros, T, Kuriyan, J.
Deposit date:2015-07-17
Release date:2015-07-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Analysis of the Role of the C-Terminal Tail in the Regulation of the Epidermal Growth Factor Receptor.
Mol.Cell.Biol., 35, 2015
5CNN
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BU of 5cnn by Molmil
Crystal structure of the EGFR kinase domain mutant I682Q
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kovacs, E, Das, R, Mirza, A, Jura, N, Barros, T, Kuriyan, J.
Deposit date:2015-07-17
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Analysis of the Role of the C-Terminal Tail in the Regulation of the Epidermal Growth Factor Receptor.
Mol.Cell.Biol., 35, 2015
5ZAU
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BU of 5zau by Molmil
Complex of the human FYN SH3 and monobody binder
Descriptor: Monobody Binder, Tyrosine-protein kinase Fyn
Authors:Reddy, P.P, Gulyani, A, Das, R.
Deposit date:2018-02-09
Release date:2019-09-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A Fyn biosensor reveals pulsatile, spatially localized kinase activity and signaling crosstalk in live mammalian cells.
Elife, 9, 2020
5YCU
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BU of 5ycu by Molmil
Domain swapped dimer of engineered hairpin loop1 mutant in Single-chain Monellin
Descriptor: Single chain monellin
Authors:Surana, P, Nandwani, N, Udgaonkar, J.B, Gosavi, S, Das, R.
Deposit date:2017-09-08
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A five-residue motif for the design of domain swapping in proteins.
Nat Commun, 10, 2019
5YCW
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BU of 5ycw by Molmil
Double domain swapped dimer of engineered hairpin loop1 and loop3 mutant in Single-chain Monellin
Descriptor: single chain monellin
Authors:Surana, P, Nandwani, N, Udgaonkar, J.B, Gosavi, S, Das, R.
Deposit date:2017-09-08
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.285 Å)
Cite:A five-residue motif for the design of domain swapping in proteins.
Nat Commun, 10, 2019
5YCT
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BU of 5yct by Molmil
Engineered hairpin loop3 mutant monomer in Single-chain Monellin
Descriptor: Single chain Monellin
Authors:Surana, P, Nandwani, N, Udgaonkar, J.B, Gosavi, S, Das, R.
Deposit date:2017-09-08
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:A five-residue motif for the design of domain swapping in proteins.
Nat Commun, 10, 2019
3GT8
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BU of 3gt8 by Molmil
Crystal structure of the inactive EGFR kinase domain in complex with AMP-PNP
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Jura, N, Endres, N.F, Engel, K, Deindl, S, Das, R, Lamers, M.H, Wemmer, D.E, Zhang, X, Kuriyan, J.
Deposit date:2009-03-27
Release date:2009-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment.
Cell(Cambridge,Mass.), 137, 2009
3H8K
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BU of 3h8k by Molmil
Crystal structure of Ube2g2 complxed with the G2BR domain of gp78 at 1.8-A resolution
Descriptor: Autocrine motility factor receptor, isoform 2, Ubiquitin-conjugating enzyme E2 G2
Authors:Kalathur, R.C, Das, R, Li, J, Byrd, R.A, Ji, X.
Deposit date:2009-04-29
Release date:2009-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78.
Mol.Cell, 34, 2009
4L9U
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BU of 4l9u by Molmil
Structure of C-terminal coiled coil of RasGRP1
Descriptor: GLYCEROL, RAS guanyl-releasing protein 1, SULFATE ION
Authors:Iwig, J.S, Vercoulen, Y, Das, R, Barros, T, Limnander, A, Che, Y, Pelton, J.G, Wemmer, D.E, Roose, J.P, Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6014 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013

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