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PDB: 31 results

8BGF
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NMR solution structure of the N-terminal RRM and flanking linker regions of Polypyrimidine tract binding protein 1 using the CYANA CONSENSUS method.
Descriptor: Polypyrimidine tract-binding protein 1
Authors:Damberger, F.D, Beusch, I, Allain, F.H.-T.
Deposit date:2022-10-27
Release date:2023-11-08
Method:SOLUTION NMR
Cite:N-terminal domain of Polypyrimidine-tract binding protein is a dynamic folding platform for adaptive RNA recognition
To Be Published
3HSF
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HEAT SHOCK TRANSCRIPTION FACTOR (HSF)
Descriptor: HEAT SHOCK TRANSCRIPTION FACTOR
Authors:Damberger, F.F, Pelton, J.G, Liu, C, Cho, H, Harrison, C.J, Nelson, H.C.M, Wemmer, D.E.
Deposit date:1995-08-07
Release date:1995-11-14
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis.
J.Mol.Biol., 254, 1995
2L52
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Solution structure of the small archaeal modifier protein 1 (SAMP1) from Methanosarcina acetivorans
Descriptor: METHANOSARCINA ACETIVORANS SAMP1 HOMOLOG
Authors:Damberger, F.F, Ranjan, N, Sutter, M, Allain, F.H.-T, Weber-Ban, E.
Deposit date:2010-10-24
Release date:2011-02-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins.
J.Mol.Biol., 405, 2011
2JPO
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NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5
Descriptor: Pheromone-binding protein
Authors:Damberger, F.F, Wuthrich, K, Leal, W.S, Ishida, Y.
Deposit date:2007-05-20
Release date:2007-10-30
Last modified:2011-10-12
Method:SOLUTION NMR
Cite:Structural Basis of Ligand Binding and Release in Insect Pheromone-Binding Proteins: NMR Structure of Antheraea polyphemus PBP1 at pH 4.5
J.Mol.Biol., 373, 2007
5M8I
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Solution structure of CUG-BP2 RRM3 in complex with 5'-UUUAA-3' RNA
Descriptor: CUGBP Elav-like family member 2, RNA (5'-R(*UP*UP*UP*AP*A)-3')
Authors:Diarra dit Konte, N, Damberger, F.F, Allain, F.H.T.
Deposit date:2016-10-28
Release date:2017-10-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Aromatic side-chain conformational switch on the surface of the RNA Recognition Motif enables RNA discrimination.
Nat Commun, 8, 2017
1XFR
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Solution structure of the Bombyx mori pheromone-binding protein fragment BmPBP(1-128) at pH 6.5
Descriptor: Pheromone-binding protein
Authors:Michel, E, Damberger, F.F, Leal, W.S, Wuthrich, K.
Deposit date:2004-09-15
Release date:2005-09-27
Last modified:2018-09-05
Method:SOLUTION NMR
Cite:Dynamic conformational equilibria in the physiological function of the Bombyx mori pheromone-binding protein.
J. Mol. Biol., 408, 2011
1GM0
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A Form of the Pheromone-Binding Protein from Bombyx mori
Descriptor: PHEROMONE-BINDING PROTEIN
Authors:Horst, R, Damberger, F, Guntert, P, Luginbuhl, P, Nikonova, L, Peng, G, Leal, W.S, Wuthrich, K.
Deposit date:2001-09-05
Release date:2001-11-30
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:NMR Structure Reveals Novel Intramolecular Regulation Mechanism for Pheromone-Binding and Release
Proc.Natl.Acad.Sci.USA, 98, 2001
1LS8
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NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH
Descriptor: pheromone binding protein
Authors:Lee, D, Damberger, F, Horst, R, Guntert, P, Leal, W.S, Wuthrich, K.
Deposit date:2002-05-17
Release date:2002-11-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH
FEBS Lett., 531, 2002
6G04
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NMR Solution Structure of Yeast TSR2(1-152) in Complex with S26A(100-119)
Descriptor: 40S ribosomal protein S26-A, Pre-rRNA-processing protein TSR2
Authors:Michel, E, Schuetz, S, Damberger, F.F, Allain, F.H.-T, Panse, V.G.
Deposit date:2018-03-16
Release date:2018-09-19
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2.
Nat Commun, 9, 2018
6G03
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NMR Solution Structure of yeast TSR2(1-152)
Descriptor: Pre-rRNA-processing protein TSR2
Authors:Michel, E, Schuetz, S, Damberger, F.F, Allain, F.H.-T, Panse, V.G.
Deposit date:2018-03-16
Release date:2018-09-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2.
Nat Commun, 9, 2018
4B0S
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Structure of the Deamidase-Depupylase Dop of the Prokaryotic Ubiquitin-like Modification Pathway in Complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DEAMIDASE-DEPUPYLASE DOP, MAGNESIUM ION
Authors:Ozcelik, D, Barandun, J, Schmitz, N, Sutter, M, Guth, E, Damberger, F.F, Allain, F.H.-T, Ban, N, Weber-Ban, E.
Deposit date:2012-07-04
Release date:2012-09-12
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structures of Pup Ligase Pafa and Depupylase Dop from the Prokaryotic Ubiquitin-Like Modification Pathway.
Nat.Commun., 3, 2012
4B0R
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Structure of the Deamidase-Depupylase Dop of the Prokaryotic Ubiquitin-like Modification Pathway
Descriptor: DEAMIDASE-DEPUPYLASE DOP
Authors:Ozcelik, D, Barandun, J, Schmitz, N, Sutter, M, Guth, E, Damberger, F.F, Allain, F.H.-T, Ban, N, Weber-Ban, E.
Deposit date:2012-07-04
Release date:2012-09-12
Last modified:2019-02-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway.
Nat Commun, 3, 2012
4B0T
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Structure of the Pup Ligase PafA of the Prokaryotic Ubiquitin-like Modification Pathway in Complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PUP--PROTEIN LIGASE
Authors:Ozcelik, D, Barandun, J, Schmitz, N, Sutter, M, Guth, E, Damberger, F.F, Allain, F.H.-T, Ban, N, Weber-Ban, E.
Deposit date:2012-07-04
Release date:2012-09-12
Method:X-RAY DIFFRACTION (2.159 Å)
Cite:Structures of Pup Ligase Pafa and Depupylase Dop from the Prokaryotic Ubiquitin-Like Modification Pathway.
Nat.Commun., 3, 2012
4BS2
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BU of 4bs2 by Molmil
NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA
Descriptor: 5'-R(*GP*UP*GP*UP*GP*AP*AP*UP*GP*AP*AP*UP)-3', TAR DNA-BINDING PROTEIN 43
Authors:Lukavsky, P.J, Daujotyte, D, Tollervey, J.R, Ule, J, Stuani, C, Buratti, E, Baralle, F.E, Damberger, F.F, Allain, F.H.T.
Deposit date:2013-06-06
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Molecular Basis of Ug-Rich RNA Recognition by the Human Splicing Factor Tdp-43
Nat.Struct.Mol.Biol., 20, 2013
1HA8
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BU of 1ha8 by Molmil
Pheromone Er-23 from Euplotes raikovi
Descriptor: PHEROMONE
Authors:Zahn, R, Damberger, F, Luporini, P, Wuthrich, K.
Deposit date:2001-03-30
Release date:2001-11-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR Structure of the Euplotes Raikovi Pheromone Er- 23 and Identification of its Five Disulfide Bonds
J.Mol.Biol., 313, 2001
2N3O
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BU of 2n3o by Molmil
Structure of PTB RRM1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA
Descriptor: Polypyrimidine tract-binding protein 1, RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*GP*GP*UP*CP*UP*UP*UP*CP*CP*AP*GP*GP*UP*CP*CP*C)-3')
Authors:Maris, C, Jayne, S.F, Damberger, F.F, Ravindranathan, S, Allain, F.H.-T.
Deposit date:2015-06-08
Release date:2016-08-10
Method:SOLUTION NMR
Cite:C-terminal helix folding upon pyrimidine-rich hairpin binding to PTB RRM1. Implications for PTB function in Encephalomyocarditis virus IRES activity.
To be Published
2MXY
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BU of 2mxy by Molmil
Solution structure of hnRNP C RRM in complex with 5'-AUUUUUC-3' RNA
Descriptor: 5'-R(*AP*UP*UP*UP*UP*UP*C)-3', Heterogeneous nuclear ribonucleoproteins C1/C2
Authors:Cienikova, Z, Damberger, F.F, Hall, J, Allain, F.H.-T, Maris, C.
Deposit date:2015-01-19
Release date:2015-02-25
Method:SOLUTION NMR
Cite:Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif.
J.Am.Chem.Soc., 136, 2014
2MZ1
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BU of 2mz1 by Molmil
Solution structure of hnRNP C RRM in complex with 5'-UUUUC-3' RNA
Descriptor: 5'-R(*UP*UP*UP*UP*C)-3', Heterogeneous nuclear ribonucleoproteins C1/C2
Authors:Cienikova, Z, Damberger, F.F, Hall, J, Allain, F.H.-T, Maris, C.
Deposit date:2015-02-05
Release date:2015-04-08
Method:SOLUTION NMR
Cite:Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif.
J.Am.Chem.Soc., 136, 2014
2L1K
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BU of 2l1k by Molmil
Mouse prion protein (121-231) containing the substitutions Y169A, Y225A, and Y226A
Descriptor: Major prion protein
Authors:Christen, B, Damberger, F.F, Perez, D.R, Hornemann, S, Wuthrich, K.
Deposit date:2010-07-28
Release date:2011-08-10
Last modified:2012-02-01
Method:SOLUTION NMR
Cite:Temperature-dependent conformational exchange in the cellular form of prion proteins
To be Published
2L40
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Mouse prion protein (121-231) containing the substitution Y169A
Descriptor: Major prion protein
Authors:Christen, B, Damberger, F.F, Perez, D.R, Hornemann, S, Wuthrich, K.
Deposit date:2010-09-28
Release date:2011-08-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Cellular prion protein conformation and function.
Proc.Natl.Acad.Sci.USA, 108, 2011
2LFW
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BU of 2lfw by Molmil
NMR structure of the PhyRSL-NepR complex from Sphingomonas sp. Fr1
Descriptor: NepR anti sigma factor, PhyR sigma-like domain
Authors:Campagne, S, Damberger, F.F, Vorholt, J.A, Allain, F.H.-T.
Deposit date:2011-07-18
Release date:2012-04-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria.
Proc.Natl.Acad.Sci.USA, 109, 2012
2KFM
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BU of 2kfm by Molmil
Mouse Prion Protein (121-231) with Mutations Y225A and Y226A
Descriptor: Major prion protein
Authors:Christen, B, Hornemann, S, Damberger, F.F, Wuthrich, K.
Deposit date:2009-02-24
Release date:2009-06-16
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Prion Protein NMR Structure from Tammar Wallaby (Macropus eugenii) Shows that the beta2-alpha2 Loop Is Modulated by Long-Range Sequence Effects.
J.Mol.Biol., 389, 2009
2KFL
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BU of 2kfl by Molmil
Tammar Wallaby Prion Protein (121-230)
Descriptor: Major prion protein
Authors:Christen, B, Hornemann, S, Damberger, F.F, Wuthrich, K.
Deposit date:2009-02-24
Release date:2009-06-16
Last modified:2020-02-19
Method:SOLUTION NMR
Cite:Prion Protein NMR Structure from Tammar Wallaby (Macropus eugenii) Shows that the beta2-alpha2 Loop Is Modulated by Long-Range Sequence Effects.
J.Mol.Biol., 389, 2009
2KFO
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Mouse Prion Protein (121-231) with Mutation V166A
Descriptor: Major prion protein
Authors:Christen, B, Hornemann, S, Damberger, F.F, Wuthrich, K.
Deposit date:2009-02-24
Release date:2009-06-16
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Prion Protein NMR Structure from Tammar Wallaby (Macropus eugenii) Shows that the beta2-alpha2 Loop Is Modulated by Long-Range Sequence Effects.
J.Mol.Biol., 389, 2009
2KU4
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Horse prion protein
Descriptor: Major prion protein
Authors:Perez, D.R, Damberger, F.F, Wuthrich, K.
Deposit date:2010-02-12
Release date:2010-06-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Horse prion protein NMR structure and comparisons with related variants of the mouse prion protein.
J.Mol.Biol., 400, 2010

 

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