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PDB: 996 results

2KMY
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BU of 2kmy by Molmil
NMR Solution structures of fully oxidised cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774
Descriptor: Cytochrome c3, HEME C
Authors:Turner, D.L, Paixao, V.B, Vis, H.
Deposit date:2009-08-05
Release date:2010-08-11
Last modified:2019-10-02
Method:SOLUTION NMR
Cite:Redox linked conformational changes in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774
Biochemistry, 49, 2010
2NXH
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BU of 2nxh by Molmil
Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase.
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHATE ION, PHOSPHOENOLPYRUVATE
Authors:Kona, F, Xu, X, Martin, P, Kuzmic, P, Gatti, D.L.
Deposit date:2006-11-17
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural and Mechanistic Changes along an Engineered Path from Metallo to Nonmetallo 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthases.
Biochemistry, 46, 2007
2K9G
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BU of 2k9g by Molmil
Solution structure of the third SH3 domain of the Cin85 adapter protein
Descriptor: SH3 domain-containing kinase-binding protein 1
Authors:Philippe, D.L, Ladbury, J.E, Pfuhl, M.
Deposit date:2008-10-10
Release date:2009-10-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the Sh3-C domain of Cin85
To be Published
2NX3
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BU of 2nx3 by Molmil
Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase
Descriptor: (2R,4R,5R,6R,7R)-2,4,5,6,7-PENTAHYDROXY-2,8-BIS(PHOSPHONOOXY)OCTANOIC ACID, 2-dehydro-3-deoxyphosphooctonate aldolase, ARABINOSE-5-PHOSPHATE, ...
Authors:Kona, F, Xu, X, Martin, P, Kuzmic, P, Gatti, D.L.
Deposit date:2006-11-16
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Mechanistic Changes along an Engineered Path from Metallo to Nonmetallo 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthases.
Biochemistry, 46, 2007
2LZZ
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BU of 2lzz by Molmil
Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15
Descriptor: Cytochrome c, 3 heme-binding sites, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dantas, J.M, Morgado, L, Turner, D.L, Salgueiro, C.A.
Deposit date:2012-10-12
Release date:2013-01-30
Last modified:2013-03-13
Method:SOLUTION NMR
Cite:Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15.
Biochim.Biophys.Acta, 1827, 2013
2MS3
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BU of 2ms3 by Molmil
The NMR structure of the rubredoxin domain of the NO Reductase Flavorubredoxin from Escherichia coli
Descriptor: Anaerobic nitric oxide reductase flavorubredoxin, ZINC ION
Authors:Turner, D.L, Silva, E, Lamosa, P.M, Teixeira, M.
Deposit date:2014-07-22
Release date:2015-07-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The NMR structure of the rubredoxin domain of the NO Reductase Flavorubredoxin from Escherichia coli
To be Published
2NUG
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BU of 2nug by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom Resolution
Descriptor: 5'-R(P*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*G)-3', 5'-R(P*AP*GP*UP*GP*GP*CP*CP*UP*UP*GP*C)-3', MAGNESIUM ION, ...
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
2O94
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BU of 2o94 by Molmil
The 97H/F mutant Structure of a glutamine-rich domain from histone deacetylase 4
Descriptor: Histone deacetylase 4
Authors:Guo, L, Han, A, Bates, D.L, Chen, L.
Deposit date:2006-12-13
Release date:2007-02-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of a conserved N-terminal domain of histone deacetylase 4 reveals functional insights into glutamine-rich domains.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2KSU
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BU of 2ksu by Molmil
Redox linked conformational changes in cytochrome C3 from Desulfovibrio desulfuricans ATCC 27774
Descriptor: Cytochrome c3, HEME C
Authors:Turner, D.L, Paixao, V.B.
Deposit date:2010-01-13
Release date:2010-09-15
Last modified:2019-10-02
Method:SOLUTION NMR
Cite:Redox linked conformational changes in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774
Biochemistry, 49, 2010
2NWS
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BU of 2nws by Molmil
Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, ARABINOSE-5-PHOSPHATE, PHOSPHOENOLPYRUVATE
Authors:Kona, F, Xu, X, Martin, P, Kuzmic, P, Gatti, D.L.
Deposit date:2006-11-16
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Mechanistic Changes along an Engineered Path from Metallo to Nonmetallo 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthases.
Biochemistry, 46, 2007
2NUF
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BU of 2nuf by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.5-Angstrom Resolution
Descriptor: 28-MER, MAGNESIUM ION, Ribonuclease III
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
2NWR
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BU of 2nwr by Molmil
Crystal structure of C11N mutant of KDO8P Synthase in complex with PEP
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHATE ION, PHOSPHOENOLPYRUVATE
Authors:Kona, F, Xu, X, Martin, P, Kuzmic, P, Gatti, D.L.
Deposit date:2006-11-16
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Mechanistic Changes along an Engineered Path from Metallo to Nonmetallo 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthases.
Biochemistry, 46, 2007
2NXI
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BU of 2nxi by Molmil
Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase.
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHATE ION, PHOSPHOENOLPYRUVATE
Authors:Kona, F, Xu, X, Martin, P, Kuzmic, P, Gatti, D.L.
Deposit date:2006-11-17
Release date:2007-07-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and mechanistic changes along an engineered path from metallo to nonmetallo 3-deoxy-D-manno-octulosonate 8-phosphate synthases
Biochemistry, 46, 2007
2NX1
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BU of 2nx1 by Molmil
Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, 5-O-phosphono-beta-D-ribofuranose, PHOSPHOENOLPYRUVATE
Authors:Kona, F, Xu, X, Martin, P, Kuzmic, P, Gatti, D.L.
Deposit date:2006-11-16
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Mechanistic Changes along an Engineered Path from Metallo to Nonmetallo 3-Deoxy-d-manno-octulosonate 8-Phosphate Synthases.
Biochemistry, 46, 2007
6U4S
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BU of 6u4s by Molmil
wild type cysteine dioxygenase
Descriptor: Cysteine dioxygenase type 1, FE (III) ION
Authors:Meneely, K.M, Chilton, A.S, Forbes, D.L, Ellis, H.R, Lamb, A.L.
Deposit date:2019-08-26
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The 3-His Metal Coordination Site Promotes the Coupling of Oxygen Activation to Cysteine Oxidation in Cysteine Dioxygenase.
Biochemistry, 59, 2020
6U9E
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BU of 6u9e by Molmil
Structure of PdpA-VgrG Complex, Lidless
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y, Zhou, Z.H, Horwitz, M.A.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.21 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6U4L
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BU of 6u4l by Molmil
cysteine dioxygenase variant - C93E
Descriptor: ACETATE ION, Cysteine dioxygenase type 1, FE (III) ION
Authors:Meneely, K.M, Chilton, A.S, Forbes, D.L, Ellis, H.R, Lamb, A.L.
Deposit date:2019-08-26
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.911 Å)
Cite:The 3-His Metal Coordination Site Promotes the Coupling of Oxygen Activation to Cysteine Oxidation in Cysteine Dioxygenase.
Biochemistry, 59, 2020
6U9G
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BU of 6u9g by Molmil
Structure of Francisella PdpA-VgrG Complex, half-lidded
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y, Zhou, Z.H, Horwitz, M.A.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6U9F
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BU of 6u9f by Molmil
Structure of Francisella PdpA-VgrG Complex, Lidded
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y.X, Horwitz, M.A, Zhou, Z.H.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6U4V
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BU of 6u4v by Molmil
Non-crosslinked wild type cysteine dioxygenase
Descriptor: Cysteine dioxygenase type 1, FE (III) ION
Authors:Meneely, K.M, Chilton, A.S, Forbes, D.L, Ellis, H.R, Lamb, A.L.
Deposit date:2019-08-26
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The 3-His Metal Coordination Site Promotes the Coupling of Oxygen Activation to Cysteine Oxidation in Cysteine Dioxygenase.
Biochemistry, 59, 2020
6VDH
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BU of 6vdh by Molmil
Crystal structure of ancestral apicomplexan lactate dehydrogenase in alternate dimer configuration with sulfate.
Descriptor: SULFATE ION, lactate dehydrogenase
Authors:Theobald, D.L, Wirth, J.D, Classen, S, Perlmutter, N.
Deposit date:2019-12-27
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mechanism of Bifunctionality in an Ancestral Apicomplexan Malate/Lactate Dehydrogenase
To Be Published
6VDI
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BU of 6vdi by Molmil
Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate.
Descriptor: SULFATE ION, lactate dehydrogenase
Authors:Theobald, D.L, Wirth, J.D, Classen, S, Perlmutter, N.
Deposit date:2019-12-27
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanism of Bifunctionality in an Ancestral Apicomplexan Malate/Lactate Dehydrogenase
To Be Published
6VDJ
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BU of 6vdj by Molmil
Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate and NADH4.
Descriptor: 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, SULFATE ION, lactate dehydrogenase
Authors:Theobald, D.L, Wirth, J.D, Classen, S, Perlmutter, N.
Deposit date:2019-12-27
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of Bifunctionality in an Ancestral Apicomplexan Malate/Lactate Dehydrogenase
To Be Published
6WER
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BU of 6wer by Molmil
DENV2 NS1 in complex with neutralizing 2B7 Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2B7 Fab heavy chain, 2B7 Fab light chain, ...
Authors:Akey, D.L, Smith, J.L.
Deposit date:2020-04-02
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.96 Å)
Cite:Structural basis for antibody inhibition of flavivirus NS1-triggered endothelial dysfunction.
Science, 371, 2021
5YGU
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BU of 5ygu by Molmil
Crystal structure of Escherichia coli (strain K12) mRNA Decapping Complex RppH-DapF
Descriptor: Diaminopimelate epimerase, IODIDE ION, L(+)-TARTARIC ACID, ...
Authors:Wang, Q, Guan, Z.Y, Zhang, D.L, Zou, T.T, Yin, P.
Deposit date:2017-09-27
Release date:2018-06-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli.
Nucleic Acids Res., 46, 2018

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PDB entries from 2024-09-11

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