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PDB: 3016 件

7PUA
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BU of 7pua by Molmil
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
分子名称: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
著者Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
登録日2021-09-29
公開日2022-03-02
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
4ONJ
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BU of 4onj by Molmil
Crystal structure of the catalytic domain of ntDRM
分子名称: DNA methyltransferase, SINEFUNGIN
著者Du, J, Patel, D.J.
登録日2014-01-28
公開日2014-06-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.807 Å)
主引用文献Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases.
Cell(Cambridge,Mass.), 157, 2014
6J23
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BU of 6j23 by Molmil
Crystal structure of arabidopsis ADAL complexed with GMP
分子名称: Adenosine/AMP deaminase family protein, GUANOSINE-5'-MONOPHOSPHATE, ZINC ION
著者Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J.
登録日2018-12-30
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing.
Rna Biol., 16, 2019
6F24
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BU of 6f24 by Molmil
PH domain from PfAPH
分子名称: C-terminal PH domain from PfAPH
著者Darvill, N, Liu, B, Matthews, S, Soldati-Favre, D, Rouse, S, Benjamin, S, Blake, T, Dubois, D.J, Hammoudi, P.M, Pino, P.
登録日2017-11-23
公開日2018-12-12
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献C-terminal PH domain from P. falciparum acylated plekstrin homology domain containing protein (APH)
To Be Published
4ONQ
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BU of 4onq by Molmil
Crystal structure of ntDRM E283S/R309S/F310S/Y590S/D591S mutant
分子名称: DNA methyltransferase, SINEFUNGIN
著者Du, J, Patel, D.J.
登録日2014-01-28
公開日2014-06-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases.
Cell(Cambridge,Mass.), 157, 2014
6J4T
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BU of 6j4t by Molmil
Crystal structure of arabidopsis ADAL complexed with IMP
分子名称: Adenosine/AMP deaminase family protein, INOSINIC ACID, ZINC ION
著者Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J.
登録日2019-01-10
公開日2019-07-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing.
Rna Biol., 16, 2019
6JFV
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BU of 6jfv by Molmil
The crystal structure of 2B-2B complex from keratins 5 and 14 (C367A mutant of K14)
分子名称: Keratin, type I cytoskeletal 14, type II cytoskeletal 5
著者Kim, M.S, Lee, C.H, Coulombe, P.A, Leahy, D.J.
登録日2019-02-12
公開日2020-01-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure-Function Analyses of a Keratin Heterotypic Complex Identify Specific Keratin Regions Involved in Intermediate Filament Assembly.
Structure, 28, 2020
6F36
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BU of 6f36 by Molmil
Polytomella Fo model
分子名称: Mitochondrial ATP synthase subunit 6, Mitochondrial ATP synthase subunit ASA6, Mitochondrial ATP synthase subunit c
著者Yildiz, O, Kuehlbrandt, W, Klusch, N, Murphy, B.J, Mills, D.J.
登録日2017-11-28
公開日2017-12-20
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of proton translocation and force generation in mitochondrial ATP synthase.
Elife, 6, 2017
7AM3
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BU of 7am3 by Molmil
Crystal structure of Peptiligase mutant - M222P
分子名称: GLYCEROL, SULFATE ION, Subtilisin BPN'
著者Rozeboom, H.J, Janssen, D.J.
登録日2020-10-08
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
7AM6
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BU of 7am6 by Molmil
Crystal structure of Peptiligase mutant - L217H/M222P/A225N/F189W
分子名称: D(-)-TARTARIC ACID, GLYCEROL, LEU-PRO-GLU-GLY-SER-PRO-VAL-THR-ASP-LEU-ARG-TYR, ...
著者Rozeboom, H.J, Janssen, D.J.
登録日2020-10-08
公開日2021-02-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
7AM8
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BU of 7am8 by Molmil
Crystal structure of Omniligase mutant W189F
分子名称: ACRYLIC ACID, CHLORIDE ION, HISTIDINE, ...
著者Rozeboom, H.J, Janssen, D.J.
登録日2020-10-08
公開日2021-02-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
7AM4
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BU of 7am4 by Molmil
Crystal structure of Peptiligase mutant - L217H/M222P
分子名称: GLYCEROL, SULFATE ION, Subtilisin BPN'
著者Rozeboom, H.J, Janssen, D.J.
登録日2020-10-08
公開日2021-02-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
7AM5
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BU of 7am5 by Molmil
Crystal structure of Peptiligase mutant - L217H/M222P/A225N
分子名称: SODIUM ION, Subtilisin BPN'
著者Rozeboom, H.J, Janssen, D.J.
登録日2020-10-08
公開日2021-02-17
最終更新日2021-03-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
7AM7
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BU of 7am7 by Molmil
Crystal structure of Peptiligase mutant - M222P/L217H/A225N/F189W/N218D
分子名称: Eglin C fragment, GLYCEROL, SULFATE ION, ...
著者Rozeboom, H.J, Janssen, D.J.
登録日2020-10-08
公開日2021-02-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
4OUD
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BU of 4oud by Molmil
Engineered tyrosyl-tRNA synthetase with the nonstandard amino acid L-4,4-biphenylalanine
分子名称: TYROSINE, Tyrosyl-tRNA synthetase
著者Takeuchi, R, Mandell, D.J, Lajoie, M.J, Church, G.M, Stoddard, B.L.
登録日2014-02-16
公開日2015-01-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Biocontainment of genetically modified organisms by synthetic protein design.
Nature, 518, 2015
4OEC
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BU of 4oec by Molmil
Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
分子名称: Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION
著者Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
登録日2014-01-13
公開日2015-01-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
To be Published
6F8E
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BU of 6f8e by Molmil
PH domain from TgAPH
分子名称: Pleckstrin homology domain
著者Darvill, N, Liu, B, Matthews, S, Soldati-Favre, D, Rouse, S, Benjamin, S, Blake, T, Dubois, D.J, Hammoudi, P.M, Pino, P.
登録日2017-12-13
公開日2019-01-30
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Structural Basis of Phosphatidic Acid Sensing by APH in Apicomplexan Parasites.
Structure, 26, 2018
4P32
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BU of 4p32 by Molmil
Crystal structure of E. coli LptB in complex with ADP-magnesium
分子名称: ADENOSINE-5'-DIPHOSPHATE, Lipopolysaccharide export system ATP-binding protein LptB, MAGNESIUM ION
著者Sherman, D.J, Lazarus, M.B, Murphy, L, Liu, C, Walker, S, Ruiz, N, Kahne, D.
登録日2014-03-05
公開日2014-03-26
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Decoupling catalytic activity from biological function of the ATPase that powers lipopolysaccharide transport.
Proc.Natl.Acad.Sci.USA, 111, 2014
4PGF
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BU of 4pgf by Molmil
The structure of mono-acetylated SAHH
分子名称: ADENOSINE, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Kavran, J.M, Wang, Y, Cole, P.A, Leahy, D.J.
登録日2014-05-01
公開日2014-10-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Regulation of s-adenosylhomocysteine hydrolase by lysine acetylation.
J.Biol.Chem., 289, 2014
4P7L
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BU of 4p7l by Molmil
Structure of Escherichia coli PgaB C-terminal domain, P212121 crystal form
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
著者Little, D.J, Li, G, Ing, C, DiFrancesco, B, Bamford, N.C, Robinson, H, Nitz, M, Pomes, R, Howell, P.L.
登録日2014-03-27
公開日2014-07-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine.
Proc.Natl.Acad.Sci.USA, 111, 2014
5CNQ
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BU of 5cnq by Molmil
Crystal structure of the Holliday junction-resolving enzyme GEN1 (WT) in complex with product DNA, Mg2+ and Mn2+ ions
分子名称: DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MANGANESE (II) ION, Nuclease-like protein, ...
著者Liu, Y.J, Freeman, A.D.J, Declais, A.C, Wilson, T.J, Gartner, A, Lilley, D.M.J.
登録日2015-07-17
公開日2015-12-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.602 Å)
主引用文献Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA.
Cell Rep, 13, 2015
6FKH
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BU of 6fkh by Molmil
Chloroplast F1Fo conformation 2
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ...
著者Hahn, A, Vonck, J, Mills, D.J, Meier, T, Kuehlbrandt, W.
登録日2018-01-24
公開日2018-05-23
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structure, mechanism, and regulation of the chloroplast ATP synthase.
Science, 360, 2018
6HIX
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BU of 6hix by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the large mitoribosomal subunit
分子名称: 12S rRNA, 50S ribosomal protein L13, putative, ...
著者Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
登録日2018-08-31
公開日2018-09-26
最終更新日2019-02-06
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
4PEF
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BU of 4pef by Molmil
Dbr1 in complex with sulfate
分子名称: GLYCEROL, MANGANESE (II) ION, RNA lariat debranching enzyme, ...
著者Montemayor, E.J, Katolik, A, Clark, N.E, Taylor, A.B, Schuermann, J.P, Combs, D.J, Johnsson, R, Holloway, S.P, Stevens, S.W, Damha, M.J, Hart, P.J.
登録日2014-04-23
公開日2014-08-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1.
Nucleic Acids Res., 42, 2014
7BNO
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BU of 7bno by Molmil
Open conformation of D614G SARS-CoV-2 spike with 2 Erect RBDs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
登録日2021-01-22
公開日2021-02-03
最終更新日2021-03-10
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献The effect of the D614G substitution on the structure of the spike glycoprotein of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 118, 2021

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件を2024-08-28に公開中

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