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PDB: 2998 results

1R1F
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Solution Structure of the Cyclotide Palicourein: Implications for the development of pharmaceutical and agricultural applications
Descriptor: Palicourein
Authors:Barry, D.G, Daly, N.L, Bokesch, H.R, Gustafson, K.R, Craik, D.J.
Deposit date:2003-09-23
Release date:2004-04-06
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Solution structure of the cyclotide palicourein: implications for the development of a pharmaceutical framework.
STRUCTURE, 12, 2004
1Q7R
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X-ray crystallographic analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Miller, D.J, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2003-08-19
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structure analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
To be Published
4G6B
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BU of 4g6b by Molmil
Three dimensional structure analysis of the type II citrate synthase from e.coli
Descriptor: Citrate synthase, SULFATE ION
Authors:Nguyen, N.T, Maurus, R, Stokell, D.J, Ayed, A, Duckworth, H.W, Brayer, G.D.
Deposit date:2012-07-18
Release date:2013-11-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Comparative Analysis of Folding and Substrate Binding Sites between Regulated Hexameric Type II Citrate Synthases and Unregulated Dimeric Type I Enzymes.
Biochemistry, 40, 2001
4GBA
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BU of 4gba by Molmil
DCNL complex with N-terminally acetylated NEDD8 E2 peptide
Descriptor: DCN1-like protein 3, NEDD8-conjugating enzyme UBE2F
Authors:Monda, J.K, Scott, D.C, Miller, D.J, Harper, J.W, Bennett, E.J, Schulman, B.A.
Deposit date:2012-07-26
Release date:2012-11-28
Last modified:2013-01-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Conservation of Distinctive N-terminal Acetylation-Dependent Interactions across a Family of Mammalian NEDD8 Ligation Enzymes.
Structure, 21, 2013
2BRV
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BU of 2brv by Molmil
Crystal structure of Streptococcus Pneumoniae Hyaluronate Lyase from 70percent saturated malonate.
Descriptor: HYALURONATE LYASE, MALONIC ACID
Authors:Rigden, D.J, Jedrzejas, M.J.
Deposit date:2005-05-11
Release date:2006-04-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Alternate Structural Conformations of Streptococcus Pneumoniae Hyaluronan Lyase: Insights Into Enzyme Flexibility and Underlying Molecular Mechanism of Action.
J.Mol.Biol., 358, 2006
2BET
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BU of 2bet by Molmil
Structure of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, in complex with 4-phospho-D-erythronate.
Descriptor: 4-PHOSPHO-D-ERYTHRONATE, CARBOHYDRATE-PHOSPHATE ISOMERASE
Authors:Roos, A.K, Ericsson, D.J, Mowbray, S.L.
Deposit date:2004-11-30
Release date:2004-12-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Competitive Inhibitors of Mycobacterium Tuberculosis Ribose-5-Phosphate Isomerase B Reveal New Information About the Reaction Mechanism
J.Biol.Chem., 280, 2005
4FT4
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BU of 4ft4 by Molmil
crystal structure of Zea mays ZMET2 in complex H3(1-32)K9me2 peptide and SAH
Descriptor: DNA (cytosine-5)-methyltransferase 1, H3(1-32)K9me2 peptide, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Du, J, Patel, D.J.
Deposit date:2012-06-27
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants.
Cell(Cambridge,Mass.), 151, 2012
1QIB
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CRYSTAL STRUCTURE OF GELATINASE A CATALYTIC DOMAIN
Descriptor: 72 kDa type IV collagenase, CALCIUM ION, ZINC ION
Authors:Dhanaraj, V, Williams, M.G, Ye, Q.-Z, Molina, F, Johnson, L.L, Ortwine, D.F, Pavlovsky, A, Rubin, J.R, Skeean, R.W, White, A.D, Humblet, C, Hupe, D.J, Blundell, T.L.
Deposit date:1999-06-11
Release date:1999-11-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray structure of gelatinase A catalytic domain complexed with a hydroxamate inhibitor
Croatica Chemica Acta, 72, 1999
1ZFS
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BU of 1zfs by Molmil
Solution structure of S100A1 bound to calcium
Descriptor: CALCIUM ION, S-100 protein, alpha chain
Authors:Wright, N.T, Varney, K.M, Weber, D.J.
Deposit date:2005-04-20
Release date:2006-04-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The three-dimensional solution structure of Ca(2+)-bound S100A1 as determined by NMR spectroscopy
J.Mol.Biol., 353, 2006
1S7P
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BU of 1s7p by Molmil
Solution structure of thermolysin digested microcin J25
Descriptor: microcin J25
Authors:Rosengren, K.J, Blond, A, Afonso, C, Tabet, J.C, Rebuffat, S, Craik, D.J.
Deposit date:2004-01-30
Release date:2004-06-15
Last modified:2011-07-27
Method:SOLUTION NMR
Cite:Structure of thermolysin cleaved microcin J25: extreme stability of a two-chain antimicrobial peptide devoid of covalent links
Biochemistry, 43, 2004
4FT2
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BU of 4ft2 by Molmil
crystal structure of Zea mays ZMET2 in complex H3(1-15)K9me2 peptide and SAH
Descriptor: DNA (cytosine-5)-methyltransferase 1, H3 peptide, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Du, J, Patel, D.J.
Deposit date:2012-06-27
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants.
Cell(Cambridge,Mass.), 151, 2012
1YVU
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BU of 1yvu by Molmil
Crystal structure of A. aeolicus Argonaute
Descriptor: CALCIUM ION, hypothetical protein aq_1447
Authors:Yuan, Y.R, Pei, Y, Ma, J.B, Kuryavyi, V, Zhadina, M, Meister, G, Chen, H.Y, Dauter, Z, Tuschl, T, Patel, D.J.
Deposit date:2005-02-16
Release date:2005-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of A. aeolicus Argonaute provides unique perspectives into the mechanism of guide strand-mediated mRNA cleavage
Mol.Cell, 19, 2005
1RTR
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BU of 1rtr by Molmil
Crystal Structure of S. Aureus Farnesyl Pyrophosphate Synthase
Descriptor: geranyltranstransferase
Authors:Hosfield, D.J, Zhang, Y, Dougan, D.R, Brooun, A, Tari, L.W, Swanson, R.V, Finn, J.
Deposit date:2003-12-10
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for bisphosphonate-mediated inhibition of isoprenoid biosynthesis
J.Mol.Biol., 279, 2004
2BMR
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BU of 2bmr by Molmil
The Crystal Structure of Nitrobenzene Dioxygenase in complex with 3- nitrotoluene
Descriptor: 1,2-ETHANEDIOL, 3-NITROTOLUENE, ETHANOL, ...
Authors:Friemann, R, Ivkovic-Jensen, M.M, Lessner, D.J, Yu, C, Gibson, D.T, Parales, R.E, Eklund, H, Ramaswamy, S.
Deposit date:2005-03-15
Release date:2005-05-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
J. Mol. Biol., 348, 2005
2BRW
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BU of 2brw by Molmil
Crystal structure of Streptococcus Pneumoniae Hyaluronate Lyase from 30percent PEGMME.
Descriptor: HYALURONATE LYASE, SULFATE ION
Authors:Rigden, D.J, Littlejohn, J.E, Jedrzejas, M.J.
Deposit date:2005-05-11
Release date:2006-04-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Alternate Structural Conformations of Streptococcus Pneumoniae Hyaluronan Lyase: Insights Into Enzyme Flexibility and Underlying Molecular Mechanism of Action.
J.Mol.Biol., 358, 2006
2BW0
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BU of 2bw0 by Molmil
Crystal Structure of the hydrolase domain of Human 10-Formyltetrahydrofolate 2 dehydrogenase
Descriptor: 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE, SULFATE ION
Authors:Ogg, D.J, Stenmark, P, Arrowsmith, C, Edwards, A, Ehn, M, Graslund, S, Hammarstrom, M, Hallberg, M, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Persson, C, Sagemark, J, Schuler, H, Sundstrom, M, Thorsell, A, Dobritzsch, D, Weigelt, J.
Deposit date:2005-07-07
Release date:2005-07-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of the Hydrolase Domain of Human 10-Formyltetrahydrofolate Dehydrogenase and its Complex with a Substrate Analogue.
Acta Crystallogr.,Sect.D, 62, 2006
1RQJ
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BU of 1rqj by Molmil
Active Conformation of Farnesyl Pyrophosphate Synthase Bound to Isopentyl Pyrophosphate and Risedronate
Descriptor: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Geranyltranstransferase, ...
Authors:Hosfield, D.J, Zhang, Y, Dougan, D.R, Brooun, A, Tari, L.W, Swanson, R.V, Finn, J.
Deposit date:2003-12-05
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for bisphosphonate-mediated inhibition of isoprenoid biosynthesis
J.Biol.Chem., 279, 2004
4HM1
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BU of 4hm1 by Molmil
Naphthalene 1,2-Dioxygenase bound to 1-indanone
Descriptor: 1,2-ETHANEDIOL, 2,3-dihydro-1H-inden-1-one, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-17
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Naphthalene 1,2-Dioxygenase bound to 1-indanone
To be Published
1RPV
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BU of 1rpv by Molmil
HIV-1 REV PROTEIN (RESIDUES 34-50)
Descriptor: HIV-1 REV PROTEIN
Authors:Scanlon, M.J, Fairlie, D.P, Craik, D.J, Englebretsen, D.R, West, M.L.
Deposit date:1995-05-04
Release date:1995-10-15
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR solution structure of the RNA-binding peptide from human immunodeficiency virus (type 1) Rev.
Biochemistry, 34, 1995
4HKV
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BU of 4hkv by Molmil
Naphthalene 1,2-Dioxygenase bound to benzamide
Descriptor: 1,2-ETHANEDIOL, BENZAMIDE, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-15
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Naphthalene 1,2-Dioxygenase bound to benzamide
TO BE PUBLISHED
4HM0
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Naphthalene 1,2-Dioxygenase bound to indole-3-acetate
Descriptor: 1,2-ETHANEDIOL, 1H-INDOL-3-YLACETIC ACID, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-17
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Naphthalene 1,2-Dioxygenase bound to indole-3-acetate
To be Published
2BGE
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BU of 2bge by Molmil
Structure-based design of Protein Tyrosine Phosphatase-1B Inhibitors
Descriptor: 1,2,5-THIADIAZOLIDIN-3-ONE-1,1-DIOXIDE, PROTEIN-TYROSINE PHOSPHATASE NON-RECEPTOR TYPE 1
Authors:Black, E, Breed, J, Breeze, A.L, Embrey, K, Garcia, R, Gero, T.W, Godfrey, L, Kenny, P.W, Morley, A.D, Minshull, C.A, Pannifer, A.D, Read, J, Rees, A, Russell, D.J, Toader, D, Tucker, J.
Deposit date:2004-12-21
Release date:2005-05-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Based Design of Protein Tyrosine Phosphatase-1B Inhibitors
Bioorg.Med.Chem.Lett., 15, 2005
2BGD
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Structure-based design of Protein Tyrosine Phosphatase-1B Inhibitors
Descriptor: 5-(4-METHOXYBIPHENYL-3-YL)-1,2,5-THIADIAZOLIDIN-3-ONE 1,1-DIOXIDE, CHLORIDE ION, PHOSPHATE ION, ...
Authors:Black, E, Breed, J, Breeze, A.L, Embrey, K, Garcia, R, Gero, T.W, Godfrey, L, Kenny, P.W, Morley, A.D, Minshull, C.A, Pannifer, A.D, Read, J, Rees, A, Russell, D.J, Toader, D, Tucker, J.
Deposit date:2004-12-21
Release date:2005-05-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-Based Design of Protein Tyrosine Phosphatase-1B Inhibitors
Bioorg.Med.Chem.Lett., 15, 2005
2C1Z
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Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification
Descriptor: 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE, UDP-GLUCOSE FLAVONOID 3-O GLYCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE
Authors:Offen, W, Martinez-Fleites, C, Kiat-Lim, E, Yang, M, Davis, B.G, Tarling, C.A, Ford, C.M, Bowles, D.J, Davies, G.J.
Deposit date:2005-09-22
Release date:2006-01-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Flavonoid Glucosyltransferase Reveals the Basis for Plant Natural Product Modification.
Embo J., 25, 2006
2C1X
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Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, UDP-GLUCOSE FLAVONOID 3-O GLYCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE
Authors:Offen, W, Martinez-Fleites, C, Kiat-Lim, E, Yang, M, Davis, B.G, Tarling, C.A, Ford, C.M, Bowles, D.J, Davies, G.J.
Deposit date:2005-09-22
Release date:2006-01-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Flavonoid Glucosyltransferase Reveals the Basis for Plant Natural Product Modification.
Embo J., 25, 2006

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