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PDB: 22172 件

7JV2
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SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
分子名称: S2H13 Fab heavy chain, S2H13 Fab light chain, Spike glycoprotein
著者Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
登録日2020-08-20
公開日2020-10-14
最終更新日2021-01-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
1BH7
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A LOW ENERGY STRUCTURE FOR THE FINAL CYTOPLASMIC LOOP OF BAND 3, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: BAND 3
著者Askin, D, Bloomberg, G.B, Chambers, E.J, Tanner, M.J.A.
登録日1998-06-16
公開日1998-11-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR solution structure of a cytoplasmic surface loop of the human red cell anion transporter, band 3.
Biochemistry, 37, 1998
8C1U
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SFX structure of D.m(6-4)photolyase
分子名称: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
登録日2022-12-21
公開日2023-11-01
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Nat.Chem., 16, 2024
8C69
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Light SFX structure of D.m(6-4)photolyase at 100 microsecond time delay
分子名称: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
登録日2023-01-11
公開日2023-11-01
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Nat.Chem., 16, 2024
8C6A
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Light SFX structure of D.m(6-4)photolyase at 1ps time delay
分子名称: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
登録日2023-01-11
公開日2023-11-01
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Nat.Chem., 16, 2024
8C6B
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Light SFX structure of D.m(6-4)photolyase at 20ps time delay
分子名称: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
登録日2023-01-11
公開日2023-11-01
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Nat.Chem., 16, 2024
8C6F
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Light SFX structure of D.m(6-4)photolyase at 400fs time delay
分子名称: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
登録日2023-01-11
公開日2023-11-01
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Nat.Chem., 16, 2024
8CIL
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Crystal structure of Coxiella burnetii Fic protein 2
分子名称: Fic family protein
著者Hoepfner, D, Itzen, A, Pogenberg, V.
登録日2023-02-10
公開日2023-11-15
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3.
Commun Biol, 6, 2023
8C7C
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Double mutant V(M84)C/A(L278)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
分子名称: 1,2-ETHANEDIOL, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
著者Gabdulkhakov, A, Selikhanov, G, Fufina, T, Vasilieva, L, Atamas, A, Uhimchuk, D.
登録日2023-01-14
公開日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Stabilization of Cereibacter sphaeroides Photosynthetic Reaction Center by the Introduction of Disulfide Bonds.
Membranes (Basel), 13, 2023
8C6K
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Double mutant A(L53)C/I(L64)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
分子名称: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, BACTERIOCHLOROPHYLL A, ...
著者Gabdulkhakov, A, Selikhanov, G, Fufina, T, Vasilieva, L, Atamas, A, Uhimchuk, D.
登録日2023-01-12
公開日2023-11-22
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Stabilization of Cereibacter sphaeroides Photosynthetic Reaction Center by the Introduction of Disulfide Bonds.
Membranes (Basel), 13, 2023
8C5X
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BU of 8c5x by Molmil
Double mutant A(L37)C/S(L99)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
分子名称: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, BACTERIOCHLOROPHYLL A, ...
著者Gabdulkhakov, A, Selikhanov, G, Fufina, T, Vasilieva, L, Atamas, A, Uhimchuk, D.
登録日2023-01-10
公開日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Stabilization of Cereibacter sphaeroides Photosynthetic Reaction Center by the Introduction of Disulfide Bonds.
Membranes (Basel), 13, 2023
2M6I
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BU of 2m6i by Molmil
Putative pentameric open-channel structure of full-length transmembrane domains of human glycine receptor alpha1 subunit
分子名称: Full-Length Transmembrane Domains of Human Glycine Receptor alpha1 Subunit
著者Mowrey, D, Cui, T, Jia, Y, Ma, D, Makhov, A.M, Zhang, P, Tang, P, Xu, Y.
登録日2013-03-29
公開日2013-09-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Open-Channel Structures of the Human Glycine Receptor alpha 1 Full-Length Transmembrane Domain.
Structure, 21, 2013
8CLN
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BU of 8cln by Molmil
Zearalenone lactonase from Streptomyces coelicoflavus, SeMet derivative for SAD phasing
分子名称: Hydrolase
著者Puehringer, D, Grishkovskaya, I, Mlynek, G, Kostan, J.
登録日2023-02-17
公開日2024-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone.
Acs Catalysis, 14, 2024
1B4A
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BU of 1b4a by Molmil
STRUCTURE OF THE ARGININE REPRESSOR FROM BACILLUS STEAROTHERMOPHILUS
分子名称: ARGININE REPRESSOR
著者Ni, J, Sakanyan, V, Charlier, D, Glansdorff, N, Van Duyne, G.D.
登録日1998-12-18
公開日1999-06-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the arginine repressor from Bacillus stearothermophilus.
Nat.Struct.Biol., 6, 1999
6ZRB
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Crystal structure of SMYD3 conjugate with piperidine-based covalent inhibitor EM127
分子名称: ACETATE ION, Histone-lysine N-methyltransferase SMYD3, N-[1-(2-Chloroacetyl)piperidin-4-yl]-5-cyclopropyl-1,2-oxazole-3-carboxamide, ...
著者Talibov, V.O, Eriksson, D.
登録日2020-07-13
公開日2022-07-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Discovery of the 4-aminopiperidine-based compound EM127 for the site-specific covalent inhibition of SMYD3
Eur.J.Med.Chem., 2022
2LUU
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BU of 2luu by Molmil
NMR solution structure of midkine-b, mdkb
分子名称: Midkine-related growth factor Mdk2
著者Yang, D, Lim, J, Meng, D.
登録日2012-06-21
公開日2013-05-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure-function analysis of full-length midkine reveals novel residues important for heparin binding and zebrafish embryogenesis.
Biochem.J., 451, 2013
1B6Y
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3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE ADENINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS, 2 STRUCTURES
分子名称: 5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
著者Korobka, A, Cullinan, D, Cosman, M, Grollman, A.P, Patel, D.J, Eisenberg, M, De Los Santos, C.
登録日1999-01-19
公開日1999-01-27
最終更新日2024-04-10
実験手法SOLUTION NMR
主引用文献Solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyadenosine, determined by NMR spectroscopy and restrained molecular dynamics.
Biochemistry, 35, 1996
9FWC
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BU of 9fwc by Molmil
Coxsackievirus B3 3C protease in C121 spacegroup
分子名称: Genome polyprotein
著者Fairhead, M, Lithgo, R.M, MacLean, E.M, Bowesman-Jones, H, Aschenbrenner, J.C, Balcomb, B.H, Capkin, E, Chandran, A.V, Godoy, A.S, Marples, P.G, Fearon, D, von Delft, F, Koekemoer, L.
登録日2024-06-28
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Coxsackievirus B3 3C protease in C121 spacegroup
To Be Published
7ZDR
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IF(apo/as isolated) conformation of CydDC mutant (H85A.C) in AMP-PNP(CydD) bound state (Dataset-16)
分子名称: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
2MLW
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New Cyt-like delta-endotoxins from Dickeya dadantii - CytC protein
分子名称: Type-1Ba cytolytic delta-endotoxin
著者Loth, K, Costechareyre, D, Effantin, G, Rahbe, Y, Condemine, G, Landon, C, Da Silva, P.
登録日2014-03-05
公開日2015-02-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献New Cyt-like delta-endotoxins from Dickeya dadantii: structure and aphicidal activity.
Sci Rep, 5, 2015
7ZDB
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BU of 7zdb by Molmil
IF(heme/bound) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ...
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZDG
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IF(heme/confined) conformation of CydDC (Dataset-5)
分子名称: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, HEME B/C
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZDS
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IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) (Dataset-18)
分子名称: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZDV
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BU of 7zdv by Molmil
IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-20)
分子名称: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZDF
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BU of 7zdf by Molmil
IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
分子名称: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023

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件を2024-07-10に公開中

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