Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 53526 件

8STX
DownloadVisualize
BU of 8stx by Molmil
Crystal structure of the F337A mutation of Trypanosoma cruzi glucokinase in the apo form (open conformation)
分子名称: Glucokinase
著者Abiskaroon, B, Carey, S.M, D'Antonio, E.L, Chruszcz, M.
登録日2023-05-11
公開日2023-05-31
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献At the outer part of the active site in Trypanosoma cruzi glucokinase: The role of phenylalanine 337.
Biochimie, 218, 2023
8OVK
DownloadVisualize
BU of 8ovk by Molmil
Lipidic amyloid-beta(1-40) fibril - polymorph L1
分子名称: Amyloid-beta A4 protein
著者Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F.
登録日2023-04-26
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (2.88 Å)
主引用文献Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40).
Nat Commun, 15, 2024
4RX2
DownloadVisualize
BU of 4rx2 by Molmil
A triple mutant in the omega-loop of TEM-1 beta-lactamase changes the substrate profile via a large conformational change and an altered general base for catalysis
分子名称: Beta-lactamase TEM, SULFATE ION
著者Stojanoski, V, Chow, D, Hu, L, Sankaran, B, Gilbert, H, Prasad, B.V.V, Palzkill, T.
登録日2014-12-08
公開日2015-03-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.315 Å)
主引用文献A Triple Mutant in the Omega-loop of TEM-1 beta-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis.
J.Biol.Chem., 290, 2015
8IOE
DownloadVisualize
BU of 8ioe by Molmil
Cryo-EM structure of cyanobacteria phosphoketolase in dodecameric assembly
分子名称: MAGNESIUM ION, Probable phosphoketolase, THIAMINE DIPHOSPHATE
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-11
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
4RZP
DownloadVisualize
BU of 4rzp by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium (NESG) Target OR366.
分子名称: Engineered Protein OR366
著者Vorobiev, S, Parmeggiani, F, Dimaio, F, Seetharaman, J, Sahdev, S, Xiao, R, Kogan, S, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2014-12-23
公開日2015-01-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献Crystal Structure of Engineered Protein OR366
To be Published
8CHX
DownloadVisualize
BU of 8chx by Molmil
Structure and function of LolA from Vibrio cholerae
分子名称: Outer-membrane lipoprotein carrier protein, ZINC ION
著者Jaiman, D, Nagampalli, R, Persson, K.
登録日2023-02-08
公開日2023-06-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A comparative analysis of lipoprotein transport proteins: LolA and LolB from Vibrio cholerae and LolA from Porphyromonas gingivalis.
Sci Rep, 13, 2023
8OVM
DownloadVisualize
BU of 8ovm by Molmil
Lipidic amyloid-beta(1-40) fibril - polymorph L2
分子名称: Amyloid-beta A4 protein
著者Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F.
登録日2023-04-26
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (3.24 Å)
主引用文献Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40).
Nat Commun, 15, 2024
8CGM
DownloadVisualize
BU of 8cgm by Molmil
Structure of the lipoprotein transporter LolA from Porphyromonas gingivalis
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FORMIC ACID, GLYCEROL, ...
著者Persson, K, Jaiman, D, Nagampalli, R.
登録日2023-02-06
公開日2023-06-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A comparative analysis of lipoprotein transport proteins: LolA and LolB from Vibrio cholerae and LolA from Porphyromonas gingivalis.
Sci Rep, 13, 2023
1B9B
DownloadVisualize
BU of 1b9b by Molmil
TRIOSEPHOSPHATE ISOMERASE OF THERMOTOGA MARITIMA
分子名称: PROTEIN (TRIOSEPHOSPHATE ISOMERASE), SULFATE ION
著者Maes, D, Wierenga, R.K.
登録日1999-02-09
公開日2000-01-01
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献The crystal structure of triosephosphate isomerase (TIM) from Thermotoga maritima: a comparative thermostability structural analysis of ten different TIM structures.
Proteins, 37, 1999
8OWE
DownloadVisualize
BU of 8owe by Molmil
Lipidic amyloid-beta(1-40) fibril - polymorph L2-L3
分子名称: Amyloid-beta A4 protein
著者Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F.
登録日2023-04-27
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40).
Nat Commun, 15, 2024
6N94
DownloadVisualize
BU of 6n94 by Molmil
Methylmalonyl-CoA decarboxylase in complex with 2-nitronate-propionyl-amino(dethia)-CoA
分子名称: DI(HYDROXYETHYL)ETHER, IMIDAZOLE, Methylmalonyl-CoA decarboxylase, ...
著者Stunkard, L.M, Dixon, A.D, Huth, T.J, Lohman, J.R.
登録日2018-11-30
公開日2019-04-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Sulfonate/Nitro Bearing Methylmalonyl-Thioester Isosteres Applied to Methylmalonyl-CoA Decarboxylase Structure-Function Studies.
J. Am. Chem. Soc., 141, 2019
8T1D
DownloadVisualize
BU of 8t1d by Molmil
Open-state cryo-EM structure of full-length human TRPV4 in complex with agonist 4a-PDD
分子名称: (1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera
著者Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
登録日2023-06-02
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Structure of human TRPV4 in complex with GTPase RhoA.
Nat Commun, 14, 2023
5MZ7
DownloadVisualize
BU of 5mz7 by Molmil
Crystal Structure of the third PDZ domain from the synaptic protein PSD-95 with incorporated Azidohomoalanine
分子名称: Disks large homolog 4
著者Kudlinzki, D, Lehner, F, Witt, K, Linhard, V.L, Silvers, R, Schwalbe, H.
登録日2017-01-31
公開日2017-10-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Impact of Azidohomoalanine Incorporation on Protein Structure and Ligand Binding.
Chembiochem, 18, 2017
6N0D
DownloadVisualize
BU of 6n0d by Molmil
Crystal structure of Tdp1 catalytic domain in complex with compound XZ575
分子名称: 1,2-ETHANEDIOL, 4-fluorobenzene-1,2-dicarboxylic acid, Tyrosyl-DNA phosphodiesterase 1
著者Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
登録日2018-11-07
公開日2019-11-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.453 Å)
主引用文献Crystal structure of Tdp1 catalytic domain in complex with compound XZ575
To Be Published
8T1F
DownloadVisualize
BU of 8t1f by Molmil
Cryo-EM structure of full-length human TRPV4 in complex with antagonist HC-067047
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-methyl-1-[3-(morpholin-4-yl)propyl]-5-phenyl-N-[3-(trifluoromethyl)phenyl]-1H-pyrrole-3-carboxamide, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera
著者Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
登録日2023-06-02
公開日2023-07-05
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献Structure of human TRPV4 in complex with GTPase RhoA.
Nat Commun, 14, 2023
6CP6
DownloadVisualize
BU of 6cp6 by Molmil
Monomer yeast ATP synthase (F1Fo) reconstituted in nanodisc.
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase protein 8, ...
著者Srivastava, A.P, Luo, M, Symersky, J, Liao, M.F, Mueller, D.M.
登録日2018-03-13
公開日2018-04-11
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane.
Science, 360, 2018
8FYX
DownloadVisualize
BU of 8fyx by Molmil
Buspirone-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
分子名称: Buspirone, CHOLESTEROL HEMISUCCINATE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Warren, A.L, Zilberg, G, Capper, M.J, Wacker, D.
登録日2023-01-26
公開日2024-05-15
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献Structural pharmacology and therapeutic potential of 5-methoxytryptamines.
Nature, 630, 2024
8XPN
DownloadVisualize
BU of 8xpn by Molmil
The Crystal Structure of USP8 from Biortus.
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Ubiquitin carboxyl-terminal hydrolase 8, ...
著者Wang, F, Cheng, W, Yuan, Z, Lin, D, Wang, J.
登録日2024-01-04
公開日2024-03-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Crystal Structure of USP8 from Biortus.
To Be Published
1B1E
DownloadVisualize
BU of 1b1e by Molmil
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT K40Q
分子名称: CITRIC ACID, HYDROLASE ANGIOGENIN
著者Leonidas, D.D, Acharya, K.R.
登録日1998-11-20
公開日1999-04-02
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Refined crystal structures of native human angiogenin and two active site variants: implications for the unique functional properties of an enzyme involved in neovascularisation during tumour growth.
J.Mol.Biol., 285, 1999
6FS1
DownloadVisualize
BU of 6fs1 by Molmil
MCL1 in complex with an indole acid ligand
分子名称: 1,2-ETHANEDIOL, 7-[3-[(1,5-dimethylpyrazol-3-yl)methylsulfanylmethyl]-1,5-dimethyl-pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indole-2-carboxylic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
著者Kasmirski, S, Hargreaves, D.
登録日2018-02-18
公開日2018-12-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery of Mcl-1-specific inhibitor AZD5991 and preclinical activity in multiple myeloma and acute myeloid leukemia.
Nat Commun, 9, 2018
8SLU
DownloadVisualize
BU of 8slu by Molmil
Crystal structure of human STEP (PTPN5) at cryogenic temperature (100 K) and high pressure (205 MPa)
分子名称: GLYCEROL, SULFATE ION, Tyrosine-protein phosphatase non-receptor type 5
著者Ebrahim, A, Guerrero, L, Riley, B.T, Kim, M, Huang, Q, Finke, A.D, Keedy, D.A.
登録日2023-04-24
公開日2023-06-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Pushed to extremes: distinct effects of high temperature vs. pressure on the structure of an atypical phosphatase.
Biorxiv, 2023
8SLT
DownloadVisualize
BU of 8slt by Molmil
Crystal structure of human STEP (PTPN5) at physiological temperature (310 K) and ambient pressure (0.1 MPa)
分子名称: SULFATE ION, Tyrosine-protein phosphatase non-receptor type 5
著者Ebrahim, A, Guerrero, L, Riley, B.T, Kim, M, Huang, Q, Finke, A.D, Keedy, D.A.
登録日2023-04-24
公開日2023-06-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Pushed to extremes: distinct effects of high temperature vs. pressure on the structure of an atypical phosphatase.
Biorxiv, 2023
8SLS
DownloadVisualize
BU of 8sls by Molmil
Crystal structure of human STEP (PTPN5) at cryogenic temperature (100 K) and ambient pressure (0.1 MPa)
分子名称: GLYCEROL, SULFATE ION, Tyrosine-protein phosphatase non-receptor type 5
著者Ebrahim, A, Guerrero, L, Riley, B.T, Kim, M, Huang, Q, Finke, A.D, Keedy, D.A.
登録日2023-04-24
公開日2023-06-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Pushed to extremes: distinct effects of high temperature vs. pressure on the structure of an atypical phosphatase.
Biorxiv, 2023
8CGV
DownloadVisualize
BU of 8cgv by Molmil
Tiamulin bound to the 50S subunit
分子名称: 23S rRNA, 50S ribosomal protein L15, 50S ribosomal protein L25, ...
著者Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N.
登録日2023-02-06
公開日2023-08-02
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (1.66 Å)
主引用文献Structural conservation of antibiotic interaction with ribosomes.
Nat.Struct.Mol.Biol., 30, 2023
4RP6
DownloadVisualize
BU of 4rp6 by Molmil
Structure of the amyloid-forming segment LTIITLE from p53 (residues 252-258)
分子名称: LTIITLE heptapeptide segment from p53
著者Soriaga, A.B, Soragni, A, Eisenberg, D.
登録日2014-10-29
公開日2016-01-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.703 Å)
主引用文献A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression in Ovarian Carcinomas.
Cancer Cell, 29, 2016

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon