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PDB: 53012 件

8J65
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the structure of L,D-transpeptidase LdtMt2 complex with citrate
分子名称: CITRIC ACID, L,D-transpeptidase 2
著者Li, D.F, Qin, Y.L.
登録日2023-04-24
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Citrate interacts with L,D-transpeptidase and hinders the growth of Mycobacterium
To Be Published
8B51
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Usutu virus methyltransferase domain in complex with sinefungin
分子名称: GLYCEROL, GLYCINE, RNA-directed RNA polymerase NS5, ...
著者Ferrero, D.S, Albentosa Gonzalez, L, Mas, A, Verdaguer, N.
登録日2022-09-21
公開日2023-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structure and function of the NS5 methyltransferase domain from Usutu virus.
Antiviral Res., 208, 2022
6ZUE
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Crystal structure of human DDB1 bound to human DCAF1 (amino acid residues 1046-1396)
分子名称: DDB1- and CUL4-associated factor 1, DNA damage-binding protein 1
著者Schwefel, D, Taylor, I.A.
登録日2020-07-22
公開日2021-07-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.094 Å)
主引用文献Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses.
Plos Pathog., 17, 2021
8B52
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Usutu virus methyltransferase domain in complex with sinefungin
分子名称: GLYCEROL, Genome polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Ferrero, D.S, Albentosa Gonzalez, L, Mas, A, Verdaguer, N.
登録日2022-09-21
公開日2023-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Structure and function of the NS5 methyltransferase domain from Usutu virus.
Antiviral Res., 208, 2022
5L3X
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Crystal structure of negative elongation factor subcomplex NELF-AC
分子名称: CHLORIDE ION, Negative elongation factor A, Negative elongation factor C/D
著者Poellmann, D, Vos, S.M, Cramer, P.
登録日2016-05-24
公開日2016-06-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Architecture and RNA binding of the human negative elongation factor.
Elife, 5, 2016
7S42
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Crystal structure of an N-acetyltransferase from Helicobacter pullorum in the presence of Coenzyme A and dTDP-3-acetamido-3,6-dideoxy-D-galactose
分子名称: 1,2-ETHANEDIOL, COENZYME A, N-acetyltransferase, ...
著者Griffiths, W.A, Spencer, K.D, Thoden, J.B, Holden, H.M.
登録日2021-09-08
公開日2021-09-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Biochemical investigation of an N-acetyltransferase from Helicobacter pullorum.
Protein Sci., 30, 2021
5BP2
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Dehydratase domain (DH) of a mycocerosic acid synthase-like (MAS-like) PKS, crystal form 1
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
著者Herbst, D.A, Jakob, P.R, Zaehringer, F, Maier, T.
登録日2015-05-27
公開日2016-03-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mycocerosic acid synthase exemplifies the architecture of reducing polyketide synthases.
Nature, 531, 2016
8SP8
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Human TRP channel TRPV6 in cNW30 nanodiscs inhibited by tetrahydrocannabivarin (THCV)
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, CALCIUM ION, CHLORIDE ION, ...
著者Neuberger, A, Yelshanskaya, M.V, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2023-05-02
公開日2023-08-23
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献Molecular pathway and structural mechanism of human oncochannel TRPV6 inhibition by the phytocannabinoid tetrahydrocannabivarin.
Nat Commun, 14, 2023
7S2H
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Crystal structure of Trypanosoma cruzi glucokinase in the apo form (open conformation)
分子名称: CITRATE ANION, Glucokinase 1, putative, ...
著者Kearns, S.P, Daneshian, L, Swartz, P.D, Carey, S.M, Chruszcz, M, D'Antonio, E.L.
登録日2021-09-03
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of Trypanosoma cruzi glucokinase in the apo form (open conformation)
To Be Published
8J9C
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Crystal structure of M61 peptidase (apo-form) from Xanthomonas campestris
分子名称: GLYCEROL, Putative glycyl aminopeptidase, SODIUM ION, ...
著者Yadav, P, Kumar, A, Jamdar, S.N, Makde, R.D.
登録日2023-05-03
公開日2024-05-01
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids.
Febs J., 291, 2024
6UK5
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Structure of SAM bound CalS10, an amino pentose methyltransferase from Micromonospora echinaspora involved in calicheamicin biosynthesis
分子名称: ACETATE ION, CalS10, DI(HYDROXYETHYL)ETHER, ...
著者Alvarado, S.K, Miller, M.D, Xu, W, Wang, Z, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
登録日2019-10-04
公開日2020-10-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of SAM bound CalS10, an amino pentose methyltransferase from Micromonospora echinaspora involved in calicheamicin biosynthesis
To Be Published
7S7V
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Crystal structure of iNicSnFR3a Fluorescent Nicotine Sensor
分子名称: iNicSnFR 3.0 Fluorescent Nicotine Sensor
著者Fan, C, Shivange, A.V, Looger, L.L, Lester, H.A, Rees, D.C.
登録日2021-09-17
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Correction: Fluorescence activation mechanism and imaging of drug permeation with new sensors for smoking-cessation ligands.
Elife, 11, 2022
8DOC
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Crystal structure of RPE65 in complex with compound 16e and palmitate
分子名称: (1R)-1-[3-(cyclohexylmethoxy)phenyl]-3-(methylamino)propan-1-ol, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, FE (II) ION, ...
著者Bassetto, M, Kiser, P.D.
登録日2022-07-12
公開日2023-05-24
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Tuning the Metabolic Stability of Visual Cycle Modulators through Modification of an RPE65 Recognition Motif.
J.Med.Chem., 66, 2023
8BLP
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BU of 8blp by Molmil
Human Urea Transporter UT-B/UT1 in Complex with Inhibitor UTBinh-14
分子名称: 10-(4-ethylphenyl)sulfonyl-~{N}-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,7,9,11-pentaen-7-amine, CHOLESTEROL HEMISUCCINATE, DODECYL-BETA-D-MALTOSIDE, ...
著者Chi, G, Dietz, L, Pike, A.C.W, Maclean, E.M, Mukhopadhyay, S.M.M, Bohstedt, T, Wang, D, Scacioc, A, McKinley, G, Arrowsmith, C.H, Edwards, A, Bountra, C, Fernandez-Cid, A, Burgess-Brown, N.A, Duerr, K.L.
登録日2022-11-10
公開日2023-10-04
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structural characterization of human urea transporters UT-A and UT-B and their inhibition.
Sci Adv, 9, 2023
4XHF
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BU of 4xhf by Molmil
Crystal structure of Shewanella oneidensis NqrC
分子名称: FLAVIN MONONUCLEOTIDE, Na-translocating NADH-quinone reductase subunit C NqrC, SODIUM ION
著者Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V.
登録日2015-01-05
公開日2015-12-16
最終更新日2016-03-16
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm.
Microbiologyopen, 5, 2016
6WXN
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BU of 6wxn by Molmil
EGFR(T790M/V948R) in complex with LN3844
分子名称: CHLORIDE ION, Epidermal growth factor receptor, MAGNESIUM ION, ...
著者Heppner, D.E, Eck, M.J.
登録日2020-05-11
公開日2021-05-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Design of a "Two-in-One" Mutant-Selective Epidermal Growth Factor Receptor Inhibitor That Spans the Orthosteric and Allosteric Sites.
J.Med.Chem., 65, 2022
8DXG
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BU of 8dxg by Molmil
HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-(trifluoromethyl)pyridin-2-ol at W24 site
分子名称: 1,2-ETHANEDIOL, 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile, 5-(trifluoromethyl)pyridin-2-one, ...
著者Chopra, A, Ruiz, F.X, Bauman, J.D, Arnold, E.
登録日2022-08-02
公開日2023-05-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Halo Library, a Tool for Rapid Identification of Ligand Binding Sites on Proteins Using Crystallographic Fragment Screening.
J.Med.Chem., 66, 2023
5LFA
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Crystal structure of iron-sulfur cluster containing bacterial (6-4) photolyase PhrB - Y424F mutant with impaired DNA repair activity
分子名称: (6-4) photolyase, 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Kwiatkowski, D, Zhang, F, Krauss, N, Lamparter, T, Scheerer, P.
登録日2016-06-30
公開日2017-01-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structures of Bacterial (6-4) Photolyase Mutants with Impaired DNA Repair Activity.
Photochem. Photobiol., 93, 2017
5ID6
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Structure of Cpf1/RNA Complex
分子名称: Cpf1, MAGNESIUM ION, RNA (5'-R(P*AP*AP*UP*UP*UP*CP*UP*AP*CP*UP*AP*AP*GP*UP*GP*UP*AP*GP*AP*UP*C)-3')
著者Dong, D, Ren, K, Qiu, X, Wang, J, Huang, Z.
登録日2016-02-24
公開日2016-04-27
最終更新日2016-05-11
実験手法X-RAY DIFFRACTION (2.382 Å)
主引用文献The crystal structure of Cpf1 in complex with CRISPR RNA
Nature, 532, 2016
8BBZ
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Crystal Structure of SilF (apo form)
分子名称: SilF, ZINC ION
著者Lithgo, R.M, Carr, S.B, Quigley, A.M, Scott, D.J.
登録日2022-10-14
公開日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of SilF (apo form)
To Be Published
6WX1
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Antigen Binding Fragment of OKT9
分子名称: GLYCEROL, OKT9 Fab Heavy Chain, OKT9 Fab Light Chain
著者Rodriguez, J.A, Helguera, G, Sawaya, M, Cascio, D, Collazo, M, Flores, M, Zink, S, Ferrero, S, Payes, C, Fuentes, D, Short, C.
登録日2020-05-09
公開日2021-05-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Antibody-Based Inhibition of Pathogenic New World Hemorrhagic Fever Mammarenaviruses by Steric Occlusion of the Human Transferrin Receptor 1 Apical Domain.
J.Virol., 95, 2021
4Y0T
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Crystal structure of apo form of OXA-58, a Carbapenem hydrolyzing Class D beta-lactamase from Acinetobacter baumanii (P21, 4mol/ASU)
分子名称: Beta-lactamase
著者Pratap, S, Katiki, M, Gill, P, Golemi-Kotra, D, Kumar, P.
登録日2015-02-06
公開日2016-01-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Active-Site Plasticity Is Essential to Carbapenem Hydrolysis by OXA-58 Class D beta-Lactamase of Acinetobacter baumannii.
Antimicrob.Agents Chemother., 60, 2015
8SY8
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Crystal structure of TsaC
分子名称: 4-formylbenzenesulfonate dehydrogenase TsaC
著者Boggs, D.G, Tian, J, Bridwell-Rabb, J.
登録日2023-05-24
公開日2023-09-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献The NADH recycling enzymes TsaC and TsaD regenerate reducing equivalents for Rieske oxygenase chemistry.
J.Biol.Chem., 299, 2023
7SBH
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Crystal structure of the iron superoxide dismutase from Acinetobacter sp. Ver3
分子名称: FE (III) ION, FLAVIN MONONUCLEOTIDE, Superoxide dismutase
著者Steimbruch, B.A, Albanesi, D, Repizo, G.D, Lisa, M.N.
登録日2021-09-24
公開日2022-03-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献The distinctive roles played by the superoxide dismutases of the extremophile Acinetobacter sp. Ver3.
Sci Rep, 12, 2022
6UBF
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Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex
分子名称: DNA (5'-D(*AP*TP*TP*GP*TP*AP*GP*CP*GP*GP*GP*AP*TP*GP*TP*CP*GP*AP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*(G47)P*AP*CP*AP*TP*CP*CP*C*GP*CP*TP*AP*CP*AP*A)-3'), DNA repair protein RAD4, ...
著者Paul, D, Min, J.H.
登録日2019-09-11
公開日2020-10-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.597 Å)
主引用文献Kinetic gating mechanism of DNA damage recognition by Rad4/XPC.
Nat Commun, 6, 2015

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件を2024-07-31に公開中

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