Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 165 results

8B4E
DownloadVisualize
BU of 8b4e by Molmil
ToxR bacterial transcriptional regulator bound to 25 bp toxT promoter DNA
Descriptor: Cholera toxin transcriptional activator, DNA (25-MER)
Authors:Canals, A, Pieretti, S, Muriel, M, El Yaman, N, Fabrega-Ferrer, M, Perez-Luque, R, Krukonis, E.S, Coll, M.
Deposit date:2022-09-20
Release date:2023-08-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:ToxR activates the Vibrio cholerae virulence genes by tethering DNA to the membrane through versatile binding to multiple sites.
Proc.Natl.Acad.Sci.USA, 120, 2023
8B4B
DownloadVisualize
BU of 8b4b by Molmil
ToxR bacterial transcriptional regulator bound to 19 bp ompU promoter DNA
Descriptor: AMMONIUM ION, CADMIUM ION, Cholera toxin transcriptional activator, ...
Authors:Canals, A, Pieretti, S, Muriel, M, El Yaman, N, Fabrega-Ferrer, M, Perez-Luque, R, Krukonis, E.S, Coll, M.
Deposit date:2022-09-20
Release date:2023-08-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:ToxR activates the Vibrio cholerae virulence genes by tethering DNA to the membrane through versatile binding to multiple sites.
Proc.Natl.Acad.Sci.USA, 120, 2023
8B4D
DownloadVisualize
BU of 8b4d by Molmil
ToxR bacterial transcriptional regulator bound to 40 bp toxT promoter DNA
Descriptor: Cholera toxin transcriptional activator, DNA (40-MER)
Authors:Canals, A, Pieretti, S, Muriel, M, El Yaman, N, Fabrega-Ferrer, M, Perez-Luque, R, Krukonis, E.S, Coll, M.
Deposit date:2022-09-20
Release date:2023-08-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:ToxR activates the Vibrio cholerae virulence genes by tethering DNA to the membrane through versatile binding to multiple sites.
Proc.Natl.Acad.Sci.USA, 120, 2023
1AYE
DownloadVisualize
BU of 1aye by Molmil
HUMAN PROCARBOXYPEPTIDASE A2
Descriptor: PROCARBOXYPEPTIDASE A2, ZINC ION
Authors:Garcia-Saez, I, Reverte, D, Vendrell, J, Aviles, F.X, Coll, M.
Deposit date:1997-11-03
Release date:1999-01-13
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The three-dimensional structure of human procarboxypeptidase A2. Deciphering the basis of the inhibition, activation and intrinsic activity of the zymogen.
EMBO J., 16, 1997
4D79
DownloadVisualize
BU of 4d79 by Molmil
Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with ATP at 1.768 Angstroem resolution
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, POTASSIUM ION, ...
Authors:Lopez-Estepa, M, Arda, A, Savko, M, Round, A, Shepard, W, Bruix, M, Coll, M, Fernandez, F.J, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2014-11-21
Release date:2015-05-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.768 Å)
Cite:The Crystal Structure and Small-Angle X-Ray Analysis of Csdl/Tcda Reveal a New tRNA Binding Motif in the Moeb/E1 Superfamily.
Plos One, 10, 2015
4D7A
DownloadVisualize
BU of 4d7a by Molmil
Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with AMP at 1.801 Angstroem resolution
Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
Authors:Lopez-Estepa, M, Arda, A, Savko, M, Round, A, Shepard, W, Bruix, M, Coll, M, Fernandez, F.J, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2014-11-21
Release date:2015-05-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:The Crystal Structure and Small-Angle X-Ray Analysis of Csdl/Tcda Reveal a New tRNA Binding Motif in the Moeb/E1 Superfamily.
Plos One, 10, 2015
3L0O
DownloadVisualize
BU of 3l0o by Molmil
Structure of RNA-free Rho transcription termination factor from Thermotoga maritima
Descriptor: SODIUM ION, SULFATE ION, Transcription termination factor rho, ...
Authors:Canals, A, Uson, I, Coll, M.
Deposit date:2009-12-10
Release date:2010-05-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Structure of RNA-Free Rho Termination Factor Indicates a Dynamic Mechanism of Transcript Capture
J.Mol.Biol., 400, 2010
7ZQW
DownloadVisualize
BU of 7zqw by Molmil
Structure of the SARS-CoV-1 main protease in complex with AG7404
Descriptor: 3C-like proteinase nsp5, ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-2-oxopyridin-1(2H)-yl]pent-4-ynoyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate
Authors:Muriel-Goni, S, Fabrega-Ferrer, M, Herrera-Morande, A, Coll, M.
Deposit date:2022-05-03
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structure and inhibition of SARS-CoV-1 and SARS-CoV-2 main proteases by oral antiviral compound AG7404.
Antiviral Res., 208, 2022
7ZQV
DownloadVisualize
BU of 7zqv by Molmil
Structure of the SARS-CoV-2 main protease in complex with AG7404
Descriptor: 3C-like proteinase nsp5, ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-2-oxopyridin-1(2H)-yl]pent-4-ynoyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate
Authors:Fabrega-Ferrer, M, Herrera-Morande, A, Perez-Saavedra, J, Coll, M.
Deposit date:2022-05-03
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structure and inhibition of SARS-CoV-1 and SARS-CoV-2 main proteases by oral antiviral compound AG7404.
Antiviral Res., 208, 2022
3DKX
DownloadVisualize
BU of 3dkx by Molmil
Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution
Descriptor: CHLORIDE ION, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Boer, D.R, Ruiz-Maso, J.A, Blanco, A.G, Vives-Llacer, M, Uson, I, Gomis-Ruth, F.X, Espinosa, M, Del Solar, G, Coll, M.
Deposit date:2008-06-26
Release date:2009-06-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains
Embo J., 28, 2009
3DKY
DownloadVisualize
BU of 3dky by Molmil
Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution
Descriptor: MANGANESE (II) ION, Replication protein repB
Authors:Boer, D.R, Ruiz-Maso, J.A, Blanco, A.G, Vives-Llacer, M, Uson, I, Gomis-Ruth, F.X, Espinosa, M, Del Solar, G, Coll, M.
Deposit date:2008-06-26
Release date:2009-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains
Embo J., 28, 2009
4ICV
DownloadVisualize
BU of 4icv by Molmil
Ubiquitin-like domain of human tubulin folding cofactor E - crystal form B
Descriptor: PRASEODYMIUM ION, Tubulin-specific chaperone E
Authors:Janowski, R, Boutin, M, Zabala, J.C, Coll, M.
Deposit date:2012-12-11
Release date:2014-06-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The structure of the complex between alpha-tubulin, TBCE and TBCB reveals a tubulin dimer dissociation mechanism.
J.Cell.Sci., 128, 2015
4ICU
DownloadVisualize
BU of 4icu by Molmil
Ubiquitin-like domain of human tubulin folding cofactor E - crystal from A
Descriptor: Tubulin-specific chaperone E
Authors:Janowski, R, Boutin, M, Zabala, J.C, Coll, M.
Deposit date:2012-12-11
Release date:2014-06-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of the complex between alpha-tubulin, TBCE and TBCB reveals a tubulin dimer dissociation mechanism.
J.Cell.Sci., 128, 2015
5IYT
DownloadVisualize
BU of 5iyt by Molmil
Complex structure of EV-B93 main protease 3C with N-Ethyl 4-((1-cycloheptyl-1,2-dihydropyrazol-3-one-5-yl)-amino)-4-oxo-2Z-butenamide
Descriptor: EV-B93 main protease 3C, N-Ethyl 4-((1-cycloheptyl-1,2-dihydropyrazol-3-one-5-yl)-amino)-4-oxo-butanamide
Authors:Kaczmarska, Z, Becker, D, Rademann, J, Coll, M.
Deposit date:2016-03-24
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Irreversible inhibitors of the 3C protease of Coxsackie virus through templated assembly of protein-binding fragments.
Nat Commun, 7, 2016
5FT4
DownloadVisualize
BU of 5ft4 by Molmil
Crystal structure of the cysteine desulfurase CsdA from Escherichia coli at 1.996 Angstroem resolution
Descriptor: CITRIC ACID, CYSTEINE DESULFURASE CSDA, GLYCEROL, ...
Authors:Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Quintana, J.F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2016-01-11
Release date:2016-12-21
Last modified:2019-01-02
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:The Mechanism of Sulfur Transfer Across Protein- Protein Interfaces: The Csd Model
Acs Catalysis, 6, 2016
5FT6
DownloadVisualize
BU of 5ft6 by Molmil
Crystal structure of the cysteine desulfurase CsdA (S-sulfonic acid) from Escherichia coli at 2.050 Angstroem resolution
Descriptor: CYSTEINE DESULFURASE CSDA, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2016-01-11
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System
Acs Catalysis, 6, 2016
4CVQ
DownloadVisualize
BU of 4cvq by Molmil
CRYSTAL STRUCTURE OF AN AMINOTRANSFERASE FROM ESCHERICHIA COLI AT 2. 11 ANGSTROEM RESOLUTION
Descriptor: ACETATE ION, GLUTAMATE-PYRUVATE AMINOTRANSFERASE ALAA, GLYCEROL, ...
Authors:Penya-Soler, E, Fernandez, F.J, Lopez-Estepa, M, Garces, F, Richardson, A.J, Rudd, K.E, Coll, M, Vega, M.C.
Deposit date:2014-03-28
Release date:2014-07-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural analysis and mutant growth properties reveal distinctive enzymatic and cellular roles for the three major L-alanine transaminases of Escherichia coli.
PLoS ONE, 9, 2014
5FT8
DownloadVisualize
BU of 5ft8 by Molmil
Crystal structure of the complex between the cysteine desulfurase CsdA and the sulfur-acceptor CsdE in the persulfurated state at 2.50 Angstroem resolution
Descriptor: Cysteine desulfurase CsdA, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2016-01-11
Release date:2016-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System
Acs Catalysis, 6, 2016
5FT5
DownloadVisualize
BU of 5ft5 by Molmil
Crystal structure of the cysteine desulfurase CsdA (persulfurated) from Escherichia coli at 2.384 Angstroem resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Quintana, J.F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2016-01-11
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.384 Å)
Cite:Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System
Acs Catalysis, 6, 2016
5DKA
DownloadVisualize
BU of 5dka by Molmil
A C2HC zinc finger is essential for the activity of the RING ubiquitin ligase RNF125
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase RNF125, MAGNESIUM ION, ...
Authors:Boer, D.R, Coll, M, Bijlmakers, M.J.
Deposit date:2015-09-03
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A C2HC zinc finger is essential for the RING-E2 interaction of the ubiquitin ligase RNF125.
Sci Rep, 6, 2016
1BAY
DownloadVisualize
BU of 1bay by Molmil
GLUTATHIONE S-TRANSFERASE YFYF CYS 47-CARBOXYMETHYLATED CLASS PI, FREE ENZYME
Descriptor: GLUTATHIONE S-TRANSFERASE CLASS PI
Authors:Vega, M.C, Coll, M.
Deposit date:1996-11-02
Release date:1997-11-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The three-dimensional structure of Cys-47-modified mouse liver glutathione S-transferase P1-1. Carboxymethylation dramatically decreases the affinity for glutathione and is associated with a loss of electron density in the alphaB-310B region.
J.Biol.Chem., 273, 1998
467D
DownloadVisualize
BU of 467d by Molmil
The structure of a decamer forming a four-way junction
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*AP*CP*CP*GP*G)-3')
Authors:Ortiz-Lombardia, M, Coll, M.
Deposit date:1999-04-22
Release date:2000-04-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of a DNA Holliday junction
Nat.Struct.Biol., 6, 1999
8AMT
DownloadVisualize
BU of 8amt by Molmil
OBD-RepB pMV158 domain
Descriptor: CHLORIDE ION, GLYCEROL, MANGANESE (II) ION, ...
Authors:Machon, C, Amodio, J, Boer, R.D, Ruiz-Maso, J.A, del Solar, G, Coll, M.
Deposit date:2022-08-04
Release date:2023-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein.
Nucleic Acids Res., 51, 2023
8AMV
DownloadVisualize
BU of 8amv by Molmil
RepB pMV158 hexamer
Descriptor: PHOSPHATE ION, Replication protein RepB, SODIUM ION
Authors:Machon, C, Amodio, J, Boer, R.D, Ruiz-Maso, J.A, del Solar, G, Coll, M.
Deposit date:2022-08-04
Release date:2023-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein.
Nucleic Acids Res., 51, 2023
8AMU
DownloadVisualize
BU of 8amu by Molmil
RepB pMV158 OBD domain bound to DDR region
Descriptor: DNA (5'-D(*AP*AP*AP*AP*GP*TP*CP*GP*CP*CP*GP*AP*AP*AP*AP*GP*TP*CP*GP*CP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*GP*CP*GP*AP*CP*TP*TP*TP*TP*CP*GP*GP*CP*GP*AP*CP*TP*TP*TP*T)-3'), MANGANESE (II) ION, ...
Authors:Amodio, J, Machon, C, Boer, R.D, Ruiz-Maso, J.A, del Solar, G, Coll, M.
Deposit date:2022-08-04
Release date:2023-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein.
Nucleic Acids Res., 51, 2023

224004

数据于2024-08-21公开中

PDB statisticsPDBj update infoContact PDBjnumon