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PDB: 170 results

8APM
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Vaccinia virus DNA helicase D5 residues 323-785 hexamer with bound DNA processed in C1
Descriptor: DNA (5'-D(P*CP*CP*GP*AP*AP*TP*CP*A)-3'), DNA (5'-D(P*TP*GP*AP*TP*TP*CP*GP*G)-3'), Primase D5
Authors:Burmeister, W.P, Hutin, S, Ling, W.L, Grimm, C, Schoehn, G.
Deposit date:2022-08-10
Release date:2022-11-09
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:The Vaccinia Virus DNA Helicase Structure from Combined Single-Particle Cryo-Electron Microscopy and AlphaFold2 Prediction.
Viruses, 14, 2022
8APL
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BU of 8apl by Molmil
Vaccinia virus DNA helicase D5 residues 323-785 hexamer with bound DNA processed in C6
Descriptor: Primase D5
Authors:Burmeister, W.P, Hutin, S, Ling, W.L, Grimm, C, Schoehn, G.
Deposit date:2022-08-10
Release date:2022-11-09
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:The Vaccinia Virus DNA Helicase Structure from Combined Single-Particle Cryo-Electron Microscopy and AlphaFold2 Prediction.
Viruses, 14, 2022
6I2N
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BU of 6i2n by Molmil
Helical RNA-bound Hantaan virus nucleocapsid
Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*U)-3')
Authors:Arragain, B, Reguera, J, Desfosses, A, Gutsche, I, Schoehn, G, Malet, H.
Deposit date:2018-11-01
Release date:2019-01-23
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:High resolution cryo-EM structure of the helical RNA-bound Hantaan virus nucleocapsid reveals its assembly mechanisms.
Elife, 8, 2019
6HX8
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BU of 6hx8 by Molmil
Tubulin-STX3451 complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Dohle, W, Prota, A.E, Menchon, G, Hamel, E, Steinmetz, M.O, Potter, B.V.L.
Deposit date:2018-10-16
Release date:2019-02-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Tetrahydroisoquinoline Sulfamates as Potent Microtubule Disruptors: Synthesis, Antiproliferative and Antitubulin Activity of Dichlorobenzyl-Based Derivatives, and a Tubulin Cocrystal Structure.
ACS Omega, 4, 2019
8AFF
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BU of 8aff by Molmil
Wild type oxalyl-CoA synthetase Pcs60p
Descriptor: Oxalate--CoA ligase
Authors:Burgi, J, Chojnowski, G, Giannopoulou, E.A, Wilmanns, M.
Deposit date:2022-07-17
Release date:2023-02-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Asymmetric horseshoe-like assembly of peroxisomal yeast oxalyl-CoA synthetase.
Biol.Chem., 404, 2023
8AFG
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BU of 8afg by Molmil
K352D oxalyl-CoA synthetase Pcs60p
Descriptor: Oxalate--CoA ligase, SULFATE ION
Authors:Burgi, J, Chojnowski, G, Wilmanns, M.
Deposit date:2022-07-17
Release date:2023-02-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Asymmetric horseshoe-like assembly of peroxisomal yeast oxalyl-CoA synthetase.
Biol.Chem., 404, 2023
6I2V
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BU of 6i2v by Molmil
Pilotin from Vibrio vulnificus type 2 secretion system, EpsS.
Descriptor: 1,2-ETHANEDIOL, PENTAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Howard, S.P, Estrozi, L, Bertrand, Q, Contreras-Martel, C, Strozen, T, Job, V, Martins, A, Fenel, D, Schoehn, G, Dessen, A.
Deposit date:2018-11-02
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and assembly of pilotin-dependent and -independent secretins of the type II secretion system.
Plos Pathog., 15, 2019
5LDF
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BU of 5ldf by Molmil
Maltose binding protein genetically fused to dodecameric glutamine synthetase
Descriptor: Glutamine synthetase, Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Coscia, F, Petosa, C, Schoehn, G.
Deposit date:2016-06-25
Release date:2016-08-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Fusion to a homo-oligomeric scaffold allows cryo-EM analysis of a small protein.
Sci Rep, 6, 2016
6H5S
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BU of 6h5s by Molmil
Cryo-EM map of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to viral genomic 5-prime RNA hexamers.
Descriptor: Nucleocapsid, RNA (5'-R(*AP*CP*CP*AP*GP*A)-3')
Authors:Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J.P, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M.
Deposit date:2018-07-25
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication.
Proc.Natl.Acad.Sci.USA, 116, 2019
6H5Q
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BU of 6h5q by Molmil
Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers.
Descriptor: Nucleocapsid, RNA (5'-R(*AP*AP*AP*AP*AP*A)-3')
Authors:Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M.
Deposit date:2018-07-25
Release date:2019-03-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication.
Proc.Natl.Acad.Sci.USA, 116, 2019
2ERY
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BU of 2ery by Molmil
The crystal structure of the Ras related protein RRas2 (RRAS2) in the GDP bound state
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein R-Ras2
Authors:Salah, E, Schoch, G, Turnbull, A, Papagrigoriou, E, Soundararajan, M, Burgess, N, Elkins, J, Gileadi, C, Gileadi, O, von Delft, F, Edwards, A, Arrowsmith, C, Weigelt, J, Sundstrom, M, Doyle, D, Structural Genomics Consortium (SGC)
Deposit date:2005-10-25
Release date:2005-11-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of the Ras related protein RRas2 (RRAS2) in the GDP bound state
To be Published
2GF0
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BU of 2gf0 by Molmil
The crystal structure of the human DiRas1 GTPase in the inactive GDP bound state
Descriptor: GTP-binding protein Di-Ras1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Turnbull, A.P, Papagrigoriou, E, Yang, X, Schoch, G, Elkins, J, Gileadi, O, Salah, E, Bray, J, Wen-Hwa, L, Fedorov, O, Niesen, F.E, von Delft, F, Weigelt, J, Edwards, A, Arrowsmith, C, Sundstrom, M, Doyle, D, Structural Genomics Consortium (SGC)
Deposit date:2006-03-21
Release date:2006-04-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the human DiRas1 GTPase in the inactive GDP bound state
To be Published
2FV8
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BU of 2fv8 by Molmil
The crystal structure of RhoB in the GDP-bound state
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Rho-related GTP-binding protein RhoB
Authors:Turnbull, A.P, Soundararajan, M, Smee, C, Johansson, C, Schoch, G, Gorrec, F, Bray, J, Papagrigoriou, E, von Delft, F, Weigelt, J, Edwards, A, Arrowsmith, C, Sundstrom, M, Doyle, D, Structural Genomics Consortium (SGC)
Deposit date:2006-01-30
Release date:2006-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of RhoB in the GDP-bound state
To be Published
2J1L
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BU of 2j1l by Molmil
Crystal Structure of Human Rho-related GTP-binding protein RhoD
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RHO-RELATED GTP-BINDING PROTEIN RHOD
Authors:Pike, A.C.W, Johansson, C, Gileadi, C, Niesen, F.H, Sobott, F, Schoch, G, Elkins, J, Smee, C, Gorrec, F, Watt, S, Bray, J, Turnbull, A.P, von Delft, F, Arrowsmith, C, Edwards, A, Weigelt, J, Sundstrom, M, Doyle, D.
Deposit date:2006-08-14
Release date:2006-09-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Human Rho-Related GTP-Binding Protein Rhod
To be Published
7M6C
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BU of 7m6c by Molmil
Crystal structure of PLA2 from snake venom of peruvian Bothrops atrox
Descriptor: Basic phospholipase A2, LAURIC ACID
Authors:Leonardo, D.A, Chojnowski, G, Simpkin, A, Seifert-Davila, W, Vivas-Ruiz, D.E, Keegan, R, Rigden, D.
Deposit date:2021-03-25
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:findMySequence: a neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM
Iucrj, 9, 2022
2CF4
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BU of 2cf4 by Molmil
Pyrococcus horikoshii TET1 peptidase can assemble into a tetrahedron or a large octahedral shell
Descriptor: COBALT (II) ION, PROTEIN PH0519
Authors:Vellieux, F.M.D, Schoehn, G, Dura, M.A, Roussel, A, Franzetti, B.
Deposit date:2006-02-15
Release date:2006-09-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:An Archaeal Peptidase Assembles Into Two Different Quaternary Structures: A Tetrahedron and a Giant Octahedron.
J.Biol.Chem., 281, 2006
4AQQ
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BU of 4aqq by Molmil
Dodecahedron formed of penton base protein from adenovirus Ad3
Descriptor: CALCIUM ION, L2 PROTEIN III (PENTON BASE)
Authors:Burmeister, W.P, Szolajska, E, Zochowska, M, Nerlo, B, Andreev, I, Schoehn, G, Andrieu, J.-P, Fender, P, Naskalska, A, Zubieta, C, Cusack, S, Chroboczek, J.
Deposit date:2012-04-19
Release date:2012-10-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.75 Å)
Cite:The Structural Basis for the Integrity of Adenovirus Ad3 Dodecahedron.
Plos One, 7, 2012
4AR2
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BU of 4ar2 by Molmil
Dodecahedron formed of penton base protein from adenovirus Ad3
Descriptor: CALCIUM ION, FIBER PROTEIN, L2 PROTEIN III (PENTON BASE)
Authors:Burmeister, W.P, Szolajska, E, Zochowska, M, Nerlo, B, Andreev, I, Schoehn, G, Andrieu, J.-P, Fender, P, Naskalska, A, Zubieta, C, Cusack, S, Chroboczek, J.
Deposit date:2012-04-20
Release date:2012-10-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Structural Basis for the Integrity of Adenovirus Ad3 Dodecahedron.
Plos One, 7, 2012
1FDF
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BU of 1fdf by Molmil
HELIX 7 BOVINE RHODOPSIN
Descriptor: RHODOPSIN
Authors:Yeagle, P.L, Danis, C, Choi, G, Alderfer, J.L, Albert, A.D.
Deposit date:2000-07-20
Release date:2000-07-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three dimensional structure of the seventh transmembrane helical domain of the G-protein receptor, rhodopsin.
Mol.Vis., 6, 2000
1O7D
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BU of 1o7d by Molmil
The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low pH activation
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Heikinheimo, P, Helland, R, Leiros, H.S, Leiros, I, Karlsen, S, Evjen, G, Ravelli, R, Schoehn, G, Ruigrok, R, Tollersrud, O.-K, Mcsweeney, S, Hough, E.
Deposit date:2002-10-30
Release date:2003-03-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of Bovine Lysosomal Alpha-Mannosidase Suggests a Novel Mechanism for Low-Ph Activation
J.Mol.Biol., 327, 2003
1O6E
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BU of 1o6e by Molmil
Epstein-Barr virus protease
Descriptor: CAPSID PROTEIN P40, PHOSPHORYLISOPROPANE
Authors:Buisson, M, Hernandez, J, Lascoux, D, Schoehn, G, Forest, E, Arlaud, G, Seigneurin, J, Ruigrok, R.W.H, Burmeister, W.P.
Deposit date:2002-09-13
Release date:2002-11-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of the Epstein-Barr Virus Protease Shows Rearrangement of the Processed C Terminus
J.Mol.Biol., 324, 2002
2OQQ
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BU of 2oqq by Molmil
Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana
Descriptor: Transcription factor HY5
Authors:Yoon, M.-K, Kim, H.M, Choi, G, Lee, J.-O, Choi, B.-S.
Deposit date:2007-02-01
Release date:2007-03-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the conformational integrity of the Arabidopsis thaliana HY5 leucine zipper homodimer.
J.Biol.Chem., 282, 2007
2OZF
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BU of 2ozf by Molmil
The crystal structure of the 2nd PDZ domain of the human NHERF-1 (SLC9A3R1)
Descriptor: Ezrin-radixin-moesin-binding phosphoprotein 50
Authors:Phillips, C, Papagrigoriou, E, Gileadi, C, Fedorov, O, Elkins, J, Berridge, G, Turnbull, A.P, Gileadi, O, Schoch, G, Smee, C, Bray, J, Savitsky, P, Uppenberg, J, von Delft, F, Gorrec, F, Umeano, C, Salah, E, Colebrook, S, Weigelt, J, Arrowsmith, C.H, Edwards, A, Sundstrom, M, Doyle, D.A, Structural Genomics Consortium (SGC)
Deposit date:2007-02-26
Release date:2007-03-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of the 2nd PDZ domain of the human NHERF-1 (SLC9A3R1)
To be Published
3KIP
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BU of 3kip by Molmil
Crystal structure of type-II 3-dehydroquinase from C. albicans
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-dehydroquinase, type II, ...
Authors:Trapani, S, Schoehn, G, Navaza, J, Abergel, C.
Deposit date:2009-11-02
Release date:2010-05-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions.
Acta Crystallogr.,Sect.D, 66, 2010
2ATV
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BU of 2atv by Molmil
The crystal structure of human RERG in the GDP bound state
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RAS-like estrogen-regulated growth inhibitor
Authors:Turnbull, A.P, Salah, E, Schoch, G, Elkins, J, Burgess, N, Gileadi, O, von Delft, F, Weigelt, J, Edwards, A, Arrowsmith, C, Sundstrom, M, Doyle, D, Structural Genomics Consortium (SGC)
Deposit date:2005-08-26
Release date:2005-10-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of human RERG in the GDP bound state
To be Published

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