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PDB: 773 results

6MY2
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Solution structure of gomesin at 298 K
Descriptor: gomesin
Authors:Chin, Y.K.-Y, Deplazes, E.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:The unusual conformation of cross-strand disulfide bonds is critical to the stability of beta-hairpin peptides.
Proteins, 88, 2020
6MY3
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BU of 6my3 by Molmil
Solution structure of gomesin at 310K
Descriptor: gomesin
Authors:Chin, Y.K.-Y, Deplazes, E.
Deposit date:2018-11-01
Release date:2019-11-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The unusual conformation of cross-strand disulfide bonds is critical to the stability of beta-hairpin peptides.
Proteins, 88, 2020
5WOE
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BU of 5woe by Molmil
Solution structure of the sorting nexin 25 phox-homology domain
Descriptor: Sorting nexin-25
Authors:Chin, Y.K.Y, Mas, C, Mobli, M, Collins, B.M.
Deposit date:2017-08-01
Release date:2018-08-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities.
Nat Commun, 10, 2019
7EG2
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BU of 7eg2 by Molmil
Crystal structure of the apoAequorin complex with (S)-daCTZ
Descriptor: (2~{S})-2-(hydroxymethyl)-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-3~{H}-inden-1-one, Aequorin-2
Authors:Tomabechi, Y, Shirouzu, M.
Deposit date:2021-03-24
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
7EG3
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Crystal structure of the apoAequorin complex with (S)-HM-daCTZ
Descriptor: (2~{S})-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-2,3-dihydroinden-1-one, Aequorin-2
Authors:Tomabechi, Y, Shirouzu, M.
Deposit date:2021-03-24
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
3L6N
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BU of 3l6n by Molmil
Crystal structure of metallo-beta-lactamase IND-7
Descriptor: SULFATE ION, ZINC ION, metallo-beta-lactamase
Authors:Yamaguchi, Y, Kurosaki, H, Yamagata, Y.
Deposit date:2009-12-23
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of metallo-beta-lactamase IND-7 from a Chryseobacterium indologenes clinical isolate at 1.65-A resolution
J.Biochem., 147, 2010
2YXV
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BU of 2yxv by Molmil
The deletion mutant of Multicopper Oxidase CueO
Descriptor: Blue copper oxidase cueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-04-27
Release date:2008-01-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YZ3
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BU of 2yz3 by Molmil
Crystallographic Investigation of Inhibition Mode of the VIM-2 Metallo-beta-lactamase from Pseudomonas aeruginosa with Mercaptocarboxylate Inhibitor
Descriptor: (S)-2-(MERCAPTOMETHYL)-5-PHENYLPENTANOIC ACID, Metallo-beta-lactamase, SULFATE ION, ...
Authors:Yamaguchi, Y, Yamagata, Y, Arakawa, Y, Kurosaki, H.
Deposit date:2007-05-02
Release date:2008-03-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic investigation of the inhibition mode of a VIM-2 metallo-beta-lactamase from Pseudomonas aeruginosa by a mercaptocarboxylate inhibitor.
J.Med.Chem., 50, 2007
2RDV
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BU of 2rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
Descriptor: FE (III) ION, RUBREDOXIN
Authors:Higuchi, Y, Yasuoka, N.
Deposit date:1998-10-07
Release date:1999-05-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
7VSX
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BU of 7vsx by Molmil
Crystal structure of QL-nanoKAZ (Reverse mutant of nanoKAZ with L18Q and V27L)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, QLnK
Authors:Tomabechi, Y, Sekine, S, Shirouzu, M, Takamitsu, H, Satoshi, I.
Deposit date:2021-10-27
Release date:2022-08-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Reverse mutants of the catalytic 19 kDa mutant protein (nanoKAZ/nanoLuc) from Oplophorus luciferase with coelenterazine as preferred substrate.
Plos One, 17, 2022
3VSM
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BU of 3vsm by Molmil
The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Descriptor: GLYCEROL, Occlusion-derived virus envelope protein E66
Authors:Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
5I2P
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BU of 5i2p by Molmil
Resonance assignments and NMR structure determination of tarantula toxin- W7A mutant of mu-TRTX-Pre1a (W6A in native sequence numbering)
Descriptor: W7A mu-TRTX-Pre1a Toxin
Authors:Chin, Y.K.-Y, Wingerd, J.S, Mobli, M, Rash, L.D.
Deposit date:2016-02-09
Release date:2017-06-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Resonance assignments and NMR structure determination of tarantula toxin- W7A mutant of mu-TRTX-Pre1a
To Be Published
5I1X
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Resonance assignments and NMR structure determination of tarantula toxin, F8A mutant of beta-TRTX-Pre1a
Descriptor: mu-TRTX-Pre1a toxin
Authors:Chin, Y.K.-Y, Wingerd, J.S, Mobli, M, Rash, L.D.
Deposit date:2016-02-07
Release date:2017-02-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Resonance assignments and NMR structure determination of tarantula toxin, mu-TRTX-Pre1a
To Be Published
3VXD
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BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
Descriptor: Putative uncharacterized protein gbs1889, SULFATE ION
Authors:Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2012-09-11
Release date:2012-10-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
6BA3
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BU of 6ba3 by Molmil
NMR structure of U21-hexatoxin-Hi1a toxin from Australian Funnel-web spider Hadronyche infensa
Descriptor: U21-hexatoxin-Hi1a
Authors:Chin, Y.K.-Y, Pineda, S.S, King, G.F.
Deposit date:2017-10-12
Release date:2018-10-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
Proc.Natl.Acad.Sci.USA, 117, 2020
1H2R
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BU of 1h2r by Molmil
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
Descriptor: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Higuchi, Y, Ogata, H.
Deposit date:1999-06-14
Release date:2000-01-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
6OTB
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BU of 6otb by Molmil
NMR structure of alpha conotoxin SII
Descriptor: Alpha-conotoxin S2
Authors:Chin, Y.K.-Y, Wilhelm, P, Alewood, P.F.
Deposit date:2019-05-02
Release date:2020-05-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and Pharmacological Characterization of alpha-Conotoxin SII: The sole member of framework II
To Be Published
6V6T
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BU of 6v6t by Molmil
Solution structure of delta-theraphotoxin-Hm1b from Heteroscodra maculata
Descriptor: Delta-theraphotoxin-Hm1b
Authors:Chin, Y.K.Y, Chow, C.Y, King, G.F.
Deposit date:2019-12-05
Release date:2020-05-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A selective Na V 1.1 activator with potential for treatment of Dravet syndrome epilepsy.
Biochem Pharmacol, 181, 2020
6MZT
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BU of 6mzt by Molmil
Solution structure of alpha-KTx-6.21 (UroTx) from Urodacus yaschenkoi
Descriptor: Potassium channel toxin alpha-KTx 6.21
Authors:Chin, Y.K.-Y, Luna-Ramirez, K, Anangi, R, King, G.F.
Deposit date:2018-11-05
Release date:2020-03-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis of the potency and selectivity of Urotoxin, a potent Kv1 blocker from scorpion venom.
Biochem. Pharmacol., 174, 2020
5WLX
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BU of 5wlx by Molmil
Solution structure of kappa-theraphotoxin-Aa1a
Descriptor: Kappa-theraphotoxin-Aa1a
Authors:Chin, Y.K.Y, Ma, L, King, G.F.
Deposit date:2017-07-28
Release date:2018-08-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel venom-derived inhibitors of the human EAG channel, a putative antiepileptic drug target.
Biochem. Pharmacol., 158, 2018
7E9S
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BU of 7e9s by Molmil
Archaeal oligosaccharyltransferase AglB from Archaeoglobus fulgidus in complex with an inhibitory peptide and a dolichol-phosphate
Descriptor: (2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE, DI(HYDROXYETHYL)ETHER, Dolichyl-phosphooligosaccharide-protein glycotransferase 3, ...
Authors:Taguchi, Y, Hirata, K, Kohda, D.
Deposit date:2021-03-05
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon.
Commun Biol, 4, 2021
4IJ6
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BU of 4ij6 by Molmil
Crystal Structure of a Novel-type Phosphoserine Phosphatase Mutant (H9A) from Hydrogenobacter thermophilus TK-6 in Complex with L-phosphoserine
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHOSERINE, ...
Authors:Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
Deposit date:2012-12-21
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
4IJ5
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Crystal Structure of a Novel-type Phosphoserine Phosphatase from Hydrogenobacter thermophilus TK-6
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Phosphoserine phosphatase 1
Authors:Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
Deposit date:2012-12-21
Release date:2013-03-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
2FFN
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BU of 2ffn by Molmil
The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H, Morita, K.
Deposit date:2005-12-20
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
BIOPHYSICS(BSJ), 2, 2006
1V47
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BU of 1v47 by Molmil
Crystal structure of ATP sulfurylase from Thermus thermophillus HB8 in complex with APS
Descriptor: ADENOSINE-5'-PHOSPHOSULFATE, ATP sulfurylase, CHLORIDE ION, ...
Authors:Taguchi, Y, Sugishima, M, Fukuyama, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-11
Release date:2004-04-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of a novel zinc-binding ATP sulfurylase from Thermus thermophilus HB8
Biochemistry, 43, 2004

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