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PDB: 772 件

7E9S
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Archaeal oligosaccharyltransferase AglB from Archaeoglobus fulgidus in complex with an inhibitory peptide and a dolichol-phosphate
分子名称: (2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE, DI(HYDROXYETHYL)ETHER, Dolichyl-phosphooligosaccharide-protein glycotransferase 3, ...
著者Taguchi, Y, Hirata, K, Kohda, D.
登録日2021-03-05
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon.
Commun Biol, 4, 2021
4IJ5
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Crystal Structure of a Novel-type Phosphoserine Phosphatase from Hydrogenobacter thermophilus TK-6
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Phosphoserine phosphatase 1
著者Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
登録日2012-12-21
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
7EG3
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Crystal structure of the apoAequorin complex with (S)-HM-daCTZ
分子名称: (2~{S})-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-2,3-dihydroinden-1-one, Aequorin-2
著者Tomabechi, Y, Shirouzu, M.
登録日2021-03-24
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
7EG2
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Crystal structure of the apoAequorin complex with (S)-daCTZ
分子名称: (2~{S})-2-(hydroxymethyl)-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-3~{H}-inden-1-one, Aequorin-2
著者Tomabechi, Y, Shirouzu, M.
登録日2021-03-24
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
7C03
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Crystal structure of POLArISact(T57S), genetically encoded probe for fluorescent polarization
分子名称: POLArISact(T57S)
著者Tomabechi, Y, Sakai, N, Shirouzu, M.
登録日2020-04-30
公開日2021-03-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献POLArIS, a versatile probe for molecular orientation, revealed actin filaments associated with microtubule asters in early embryos.
Proc.Natl.Acad.Sci.USA, 118, 2021
4IJ6
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Crystal Structure of a Novel-type Phosphoserine Phosphatase Mutant (H9A) from Hydrogenobacter thermophilus TK-6 in Complex with L-phosphoserine
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHOSERINE, ...
著者Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
登録日2012-12-21
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
7F2V
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Urate oxidase from Thermobispora bispora in apo form
分子名称: DIMETHYL SULFOXIDE, SULFATE ION, Uricase
著者Chiu, Y.C, Hsu, T.S, Huang, C.Y, Hsu, C.H.
登録日2021-06-14
公開日2022-05-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and biochemical insights into a hyperthermostable urate oxidase from Thermobispora bispora for hyperuricemia and gout therapy.
Int.J.Biol.Macromol., 188, 2021
7WZU
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Crystal structure of metallo-beta-lactamase IMP-6.
分子名称: Beta-lactamase, ZINC ION
著者Yamaguchi, Y, Kurosaki, H.
登録日2022-02-19
公開日2023-01-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.954 Å)
主引用文献Difference in the Inhibitory Effect of Thiol Compounds and Demetallation Rates from the Zn(II) Active Site of Metallo-beta-lactamases (IMP-1 and IMP-6) Associated with a Single Amino Acid Substitution.
Acs Infect Dis., 9, 2023
5WOE
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Solution structure of the sorting nexin 25 phox-homology domain
分子名称: Sorting nexin-25
著者Chin, Y.K.Y, Mas, C, Mobli, M, Collins, B.M.
登録日2017-08-01
公開日2018-08-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities.
Nat Commun, 10, 2019
5X6X
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Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
分子名称: 1,2-ETHANEDIOL, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
2CWV
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Product schiff-base intermediate of copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
2CWU
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Substrate schiff-base intermediate of copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
5X6Z
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Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X71
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Crystal structure of Rice Dwarf Virus P5 in space group P212121
分子名称: GUANOSINE-5'-MONOPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.568 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
7VSX
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Crystal structure of QL-nanoKAZ (Reverse mutant of nanoKAZ with L18Q and V27L)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, QLnK
著者Tomabechi, Y, Sekine, S, Shirouzu, M, Takamitsu, H, Satoshi, I.
登録日2021-10-27
公開日2022-08-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.698 Å)
主引用文献Reverse mutants of the catalytic 19 kDa mutant protein (nanoKAZ/nanoLuc) from Oplophorus luciferase with coelenterazine as preferred substrate.
Plos One, 17, 2022
3VSM
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The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
分子名称: GLYCEROL, Occlusion-derived virus envelope protein E66
著者Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
登録日2012-04-27
公開日2013-05-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VXD
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BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889, SULFATE ION
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-09-11
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
5I2P
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Resonance assignments and NMR structure determination of tarantula toxin- W7A mutant of mu-TRTX-Pre1a (W6A in native sequence numbering)
分子名称: W7A mu-TRTX-Pre1a Toxin
著者Chin, Y.K.-Y, Wingerd, J.S, Mobli, M, Rash, L.D.
登録日2016-02-09
公開日2017-06-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Resonance assignments and NMR structure determination of tarantula toxin- W7A mutant of mu-TRTX-Pre1a
To Be Published
5I1X
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Resonance assignments and NMR structure determination of tarantula toxin, F8A mutant of beta-TRTX-Pre1a
分子名称: mu-TRTX-Pre1a toxin
著者Chin, Y.K.-Y, Wingerd, J.S, Mobli, M, Rash, L.D.
登録日2016-02-07
公開日2017-02-08
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Resonance assignments and NMR structure determination of tarantula toxin, mu-TRTX-Pre1a
To Be Published
1RDV
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BU of 1rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
分子名称: FE (III) ION, RUBREDOXIN
著者Higuchi, Y, Yasuoka, N.
登録日1998-09-30
公開日1999-05-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
2CWT
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Catalytic base deletion in copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
5X70
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Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer
分子名称: RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3'), mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of capping enzyme from Rice dwarf virus
To Be Published
1V9K
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The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli
分子名称: Ribosomal large subunit pseudouridine synthase C, SULFATE ION
著者Machida, Y, Mizutani, K, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2004-01-26
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
5ZJ6
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Crystal structure of HCK kinase complexed with a pyrrolo-pyrimidine inhibitor 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
分子名称: 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Tyrosine-protein kinase HCK
著者Tomabechi, Y, Kukimoto-Niino, M, Shirouzu, M.
登録日2018-03-19
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.696 Å)
主引用文献Phosphorylated and non-phosphorylated HCK kinase domains produced by cell-free protein expression.
Protein Expr. Purif., 150, 2018
1H2A
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SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
分子名称: FE3-S4 CLUSTER, HYDROGENASE, IRON/SULFUR CLUSTER, ...
著者Higuchi, Y, Yasuoka, N.
登録日1997-10-17
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997

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