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PDB: 775 件
6LVK
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Crystal structure of FGFR2 in complex with 1,3,5-triazine derivative
分子名称: Fibroblast growth factor receptor 2, N-ethyl-2-[[4-[[4-(4-methylpiperazin-1-yl)-3-(2-morpholin-4-ylethoxy)phenyl]amino]-1,3,5-triazin-2-yl]amino]benzenesulfonamide, SULFATE ION
著者Echizen, Y, Amano, Y, Tateishi, Y.
登録日2020-02-04
公開日2020-04-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structure-based drug design of 1,3,5-triazine and pyrimidine derivatives as novel FGFR3 inhibitors with high selectivity over VEGFR2.
Bioorg.Med.Chem., 28, 2020
7E9U
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BU of 7e9u by Molmil
Trehalase of Arabidopsis thaliana
分子名称: GLYCEROL, PHOSPHATE ION, SODIUM ION, ...
著者Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H.
登録日2021-03-05
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism
To Be Published
7EAW
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BU of 7eaw by Molmil
Trehalase of Arabidopsis thaliana acid mutant -D380A trehalose complex
分子名称: GLYCEROL, Trehalase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H.
登録日2021-03-08
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism
To Be Published
6BA3
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BU of 6ba3 by Molmil
NMR structure of U21-hexatoxin-Hi1a toxin from Australian Funnel-web spider Hadronyche infensa
分子名称: U21-hexatoxin-Hi1a
著者Chin, Y.K.-Y, Pineda, S.S, King, G.F.
登録日2017-10-12
公開日2018-10-17
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
Proc.Natl.Acad.Sci.USA, 117, 2020
2CWT
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BU of 2cwt by Molmil
Catalytic base deletion in copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
3VXD
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BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889, SULFATE ION
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-09-11
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
5X71
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BU of 5x71 by Molmil
Crystal structure of Rice Dwarf Virus P5 in space group P212121
分子名称: GUANOSINE-5'-MONOPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.568 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
8JOR
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BU of 8jor by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type A crystal
分子名称: Acyltransferase, PENTAETHYLENE GLYCOL
著者Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
登録日2023-06-08
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
8JOS
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BU of 8jos by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal
分子名称: Acyltransferase, CHLORIDE ION, TRIETHYLENE GLYCOL
著者Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
登録日2023-06-08
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
5GV3
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BU of 5gv3 by Molmil
Crystal structure of the membrane-distal domain of mouse lysosome-associated membrane protein 2 (LAMP-2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Lysosome-associated membrane glycoprotein 2, ZINC ION
著者Tomabechi, Y, Ehara, H, Kukimoto-Niino, M, Shirouzu, M.
登録日2016-09-01
公開日2017-09-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.096 Å)
主引用文献Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes.
Biochem. Biophys. Res. Commun., 479, 2016
8UNG
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BU of 8ung by Molmil
Solution structure of toxin, U-RDTX-Pp19, from assassin bug Pristhesancus plagipennis
分子名称: Venom peptide Pp19a
著者Chin, Y.K.Y, Walker, A.A, King, G.F.
登録日2023-10-18
公開日2024-05-29
最終更新日2024-09-18
実験手法SOLUTION NMR
主引用文献Structure and bioactivity of an insecticidal trans-defensin from assassin bug venom.
Structure, 32, 2024
5ZJ6
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BU of 5zj6 by Molmil
Crystal structure of HCK kinase complexed with a pyrrolo-pyrimidine inhibitor 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
分子名称: 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Tyrosine-protein kinase HCK
著者Tomabechi, Y, Kukimoto-Niino, M, Shirouzu, M.
登録日2018-03-19
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.696 Å)
主引用文献Phosphorylated and non-phosphorylated HCK kinase domains produced by cell-free protein expression.
Protein Expr. Purif., 150, 2018
1H2R
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BU of 1h2r by Molmil
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
分子名称: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Higuchi, Y, Ogata, H.
登録日1999-06-14
公開日2000-01-05
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
5GV0
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BU of 5gv0 by Molmil
Crystal structure of the membrane-proximal domain of mouse lysosome-associated membrane protein 1 (LAMP-1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Lysosome-associated membrane glycoprotein 1, SULFATE ION
著者Tomabechi, Y, Ehara, H, Kukimoto-Niino, M, Shirouzu, M.
登録日2016-09-01
公開日2016-10-12
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes
Biochem.Biophys.Res.Commun., 479, 2016
6K31
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BU of 6k31 by Molmil
Crystal structure of pyrophosphate-dependent phosphoenolpyruvate carboxykinase (PPi-PEPCK)
分子名称: AiPEPCK, COBALT (II) ION
著者Chiba, Y, Miyakawa, T, Tanokura, M.
登録日2019-05-15
公開日2019-11-06
最終更新日2020-01-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes.
J.Biol.Chem., 294, 2019
6KRV
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BU of 6krv by Molmil
Crystal structure of mouse IgG2b Fc complexed with B domain of Protein A
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-2B chain C region, ...
著者Taniguchi, Y, Satoh, T, Yagi, H, Kato, K.
登録日2019-08-22
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q.
Int J Mol Sci, 21, 2019
1RDV
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BU of 1rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
分子名称: FE (III) ION, RUBREDOXIN
著者Higuchi, Y, Yasuoka, N.
登録日1998-09-30
公開日1999-05-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
6IUJ
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BU of 6iuj by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GH30 Xylanase B, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2018-11-28
公開日2019-01-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungusTalaromyces cellulolyticus.
J. Biol. Chem., 294, 2019
6KRN
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Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris in complex with aldotriuronic acid
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-methyl-alpha-D-glucopyranuronic acid-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, Mating factor alpha,GH30 Xylanase B, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2019-08-22
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
6KRU
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Crystal structure of mouse IgG2b Fc
分子名称: Ig gamma-2B chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
著者Taniguchi, Y, Satoh, T, Yagi, H, Kato, K.
登録日2019-08-22
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q.
Int J Mol Sci, 21, 2019
6LFU
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Poa1p F152A mutant in complex with ADP-ribose
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose 1''-phosphate phosphatase
著者Chiu, Y.C, Hsu, C.H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.123 Å)
主引用文献Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
6KRL
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Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2019-08-22
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
6LFT
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Poa1p S30A mutant in complex with ADP-ribose
分子名称: ACETATE ION, ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose 1''-phosphate phosphatase
著者Chiu, Y.C, Hsu, C.H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
6LFS
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Poa1p H23A mutant in complex with ADP-ribose
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose 1''-phosphate phosphatase
著者Chiu, Y.C, Hsu, C.H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
6LFQ
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Crystal structure of Poa1p in apo form
分子名称: ADP-ribose 1''-phosphate phosphatase, GLYCEROL
著者Chiu, Y.C, Hsu, C.H.
登録日2019-12-03
公開日2020-12-09
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.359 Å)
主引用文献Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021

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