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PDB: 772 件
3ATE
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BU of 3ate by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM praseodymium (III) acetate)
分子名称: PRASEODYMIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
2D5M
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BU of 2d5m by Molmil
Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, ZINC ION, ...
著者Ueda, Y, Shibata, N, Higuchi, Y.
登録日2005-11-02
公開日2006-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
To be Published
2DOO
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BU of 2doo by Molmil
The structure of IMP-1 complexed with the detecting reagent (DansylC4SH) by a fluorescent probe
分子名称: BETA-LACTAMASE IMP-1, N-[4-({[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}AMINO)BUTYL]-3-SULFANYLPROPANAMIDE, ZINC ION
著者Kurosaki, H, Yamaguchi, Y, Yasuzawa, H, Jin, W, Yamagata, Y, Arakawa, Y.
登録日2006-05-01
公開日2006-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Probing, inhibition, and crystallographic characterization of metallo-beta-lactamase (IMP-1) with fluorescent agents containing dansyl and thiol groups
Chemmedchem, 1, 2006
2E4F
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BU of 2e4f by Molmil
Crystal Structure of the Cytoplasmic Domain of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2
分子名称: G protein-activated inward rectifier potassium channel 2
著者Inanobe, A, Kurachi, Y.
登録日2006-12-06
公開日2007-06-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.302 Å)
主引用文献Structural Diversity in the Cytoplasmic Region of G Protein-Gated Inward Rectifier K+ Channels
CHANNELS, 1, 2007
2E4I
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BU of 2e4i by Molmil
Human Telomeric DNA mixed-parallel/antiparallel quadruplex under Physiological Ionic Conditions Stabilized by Proper Incorporation of 8-Bromoguanosines
分子名称: DNA (5'-D(*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*(BGM)P*DGP*DTP*DTP*DAP*(BGM)P*DGP*DG)-3')
著者Matsugami, A, Xu, Y, Noguchi, Y, Sugiyama, H, Katahira, M.
登録日2006-12-11
公開日2007-12-11
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure of a human telomeric DNA sequence stabilized by 8-bromoguanosine substitutions, as determined by NMR in a K+ solution
Febs J., 274, 2007
2DCF
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BU of 2dcf by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N mutant with substrate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Ohki, T, Shibata, N, Higuchi, Y, Takeo, M, Negoro, S.
登録日2006-01-06
公開日2007-01-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase
J.Mol.Biol., 370, 2007
2ZC4
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BU of 2zc4 by Molmil
Penicillin-binding protein 2X (PBP 2X) acyl-enzyme complex (tebipenem) from Streptococcus pneumoniae
分子名称: (4R,5S)-3-(1-(4,5-dihydrothiazol-2-yl)azetidin-3-ylthio)-5-((2S,3R)-3-hydroxy-1-oxobutan-2-yl)-4-methyl-4,5- dihydro-1H-pyrrole-2-carboxylic acid, Penicillin-binding protein 2X, SULFATE ION
著者Yamada, M, Watanabe, T, Takeuchi, Y.
登録日2007-11-02
公開日2008-04-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structures of Biapenem and Tebipenem Complexed with Penicillin-Binding Proteins 2X and 1A from Streptococcus pneumoniae
Antimicrob.Agents Chemother., 52, 2008
3A33
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BU of 3a33 by Molmil
UbcH5b~Ubiquitin Conjugate
分子名称: GLYCEROL, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2
著者Sakata, E, Satoh, T, Yamamoto, S, Yamaguchi, Y, Yagi-Utsumi, M, Kurimoto, E, Wakatsuki, S, Kato, K.
登録日2009-06-08
公開日2009-11-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of UbcH5b~Ubiquitin Intermediate: Insight into the Formation of the Self-Assembled E2~Ub Conjugates
Structure, 18, 2010
2ZCB
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BU of 2zcb by Molmil
Crystal Structure of ubiquitin P37A/P38A
分子名称: Ubiquitin, ZINC ION
著者Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S.
登録日2007-11-08
公開日2007-11-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of ubiquitin P37A/P38A
To be published
2ZC3
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BU of 2zc3 by Molmil
Penicillin-binding protein 2X (PBP 2X) acyl-enzyme complex (biapenem) from Streptococcus pneumoniae
分子名称: (4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylsulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-meth yl-4,5-dihydro-1H-pyrrole-2-carboxylate, Penicillin-binding protein 2X, SULFATE ION
著者Yamada, M, Watanabe, T, Takeuchi, Y.
登録日2007-11-02
公開日2008-04-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structures of Biapenem and Tebipenem Complexed with Penicillin-Binding Proteins 2X and 1A from Streptococcus pneumoniae
Antimicrob.Agents Chemother., 52, 2008
5I8N
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BU of 5i8n by Molmil
Solution Structure of human calcium-binding S100A9 (C3S) protein
分子名称: Protein S100-A9
著者Chang, C.-C, Chin, Y.
登録日2016-02-19
公開日2016-08-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Blocking the interaction between S100A9 and RAGE V domain using CHAPS molecule: A novel route to drug development against cell proliferation
Biochim.Biophys.Acta, 1864, 2016
3AVE
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BU of 3ave by Molmil
Crystal Structure of the Fucosylated Fc Fragment from Human Immunoglobulin G1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, ZINC ION
著者Matsumiya, S, Yamaguchi, Y, Saito, J, Nagano, M, Sasakawa, H, Otaki, S, Satoh, M, Shitara, K, Kato, K.
登録日2011-03-04
公開日2011-04-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Corrigendum to "Structural Comparison of Fucosylated and Nonfucosylated Fc Fragments of Human Immunoglobulin G1" [J. Mol. Biol. 386/3 (2007) 767-779]
J.Mol.Biol., 408, 2011
2D5G
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BU of 2d5g by Molmil
Structure of ubiquitin fold protein R767E mutant
分子名称: Axin-1, MERCURY (II) ION
著者Shibata, N, Higuchi, Y.
登録日2005-11-01
公開日2006-11-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure of ubiquitin fold protein R767E mutant
to be published
2D1P
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BU of 2d1p by Molmil
crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
分子名称: Hypothetical UPF0116 protein yheM, Hypothetical UPF0163 protein yheN, Hypothetical protein yheL, ...
著者Numata, T, Fukai, S, Ikeuchi, Y, Suzuki, T, Nureki, O.
登録日2005-08-30
公開日2006-02-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural Basis for Sulfur Relay to RNA Mediated by Heterohexameric TusBCD Complex
Structure, 14, 2006
2DPF
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BU of 2dpf by Molmil
Crystal Structure of curculin1 homodimer
分子名称: Curculin, SULFATE ION
著者Kurimoto, E, Suzuki, M, Amemiya, E, Yamaguchi, Y, Nirasawa, S, Shimba, N, Xu, N, Kashiwagi, T, Kawai, M, Suzuki, E, Kato, K.
登録日2006-05-11
公開日2007-05-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
J.Biol.Chem., 282, 2007
2YYS
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BU of 2yys by Molmil
Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
分子名称: GLYCEROL, Proline iminopeptidase-related protein
著者Okai, M, Miyauchi, Y, Ebihara, A, Lee, W.C, Nagata, K, Tanokura, M.
登録日2007-05-01
公開日2008-02-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Proteins, 70, 2008
2Z2M
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BU of 2z2m by Molmil
Cefditoren-Acylated Penicillin-Binding Protein 2X (PBP2X) from Streptococcus pneumoniae
分子名称: (2R)-2-[(1R)-1-{[(2Z)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO)ACETYL]AMINO}-2-OXOETHYL]-5-[(Z)-2-(4-METHYL-1,3-THIAZOL-5-YL)VINYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID, Penicillin-binding protein 2X, SULFATE ION
著者Yamada, M, Watanabe, T, Takeuchi, Y.
登録日2007-05-23
公開日2007-09-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of Cefditoren Complexed with Streptococcus pneumoniae Penicillin-Binding Protein 2X: Structural Basis for its High Antimicrobial Activity
Antimicrob.Agents Chemother., 51, 2007
2DER
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BU of 2der by Molmil
Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state
分子名称: PHOSPHATE ION, SULFATE ION, tRNA, ...
著者Numata, T, Ikeuchi, Y, Fukai, S, Suzuki, T, Nureki, O.
登録日2006-02-17
公開日2006-08-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Snapshots of tRNA sulphuration via an adenylated intermediate
Nature, 442, 2006
2DET
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BU of 2det by Molmil
Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state
分子名称: SULFATE ION, tRNA, tRNA-specific 2-thiouridylase mnmA
著者Numata, T, Ikeuchi, Y, Fukai, S, Suzuki, T, Nureki, O.
登録日2006-02-17
公開日2006-08-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Snapshots of tRNA sulphuration via an adenylated intermediate
Nature, 442, 2006
2DJJ
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Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase
分子名称: Protein disulfide-isomerase
著者Kato, K, Yamaguchi, Y.
登録日2006-04-04
公開日2006-04-25
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase
To be Published
2ZPC
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BU of 2zpc by Molmil
Crystal structure of the R43L mutant of LolA in the closed form
分子名称: Outer-membrane lipoprotein carrier protein
著者Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
登録日2008-07-10
公開日2008-08-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
2ZPD
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BU of 2zpd by Molmil
Crystal structure of the R43L mutant of LolA in the open form
分子名称: Outer-membrane lipoprotein carrier protein
著者Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
登録日2008-07-10
公開日2008-08-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
2ZWN
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Crystal structure of the novel two-domain type laccase from a metagenome
分子名称: CHLORIDE ION, COPPER (II) ION, CU-O-CU LINKAGE, ...
著者Komori, H, Miyazaki, K, Higuchi, Y.
登録日2008-12-17
公開日2009-04-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray structure of a two-domain type laccase: a missing link in the evolution of multi-copper proteins
Febs Lett., 583, 2009
2Z2L
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BU of 2z2l by Molmil
Penicillin-Binding Protein 2X (PBP2X) from Streptococcus pneumoniae
分子名称: Penicillin-binding protein 2X, SULFATE ION
著者Yamada, M, Watanabe, T, Takeuchi, Y.
登録日2007-05-23
公開日2007-09-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal Structure of Cefditoren Complexed with Streptococcus pneumoniae Penicillin-Binding Protein 2X: Structural Basis for its High Antimicrobial Activity
Antimicrob.Agents Chemother., 51, 2007
2DTS
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BU of 2dts by Molmil
Crystal Structure of the Defucosylated Fc Fragment from Human Immunoglobulin G1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region
著者Matsumiya, S, Yamaguchi, Y, Saito, J, Nagano, M, Sasakawa, H, Otaki, S, Satoh, M, Shitara, K, Kato, K.
登録日2006-07-14
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural comparison of fucosylated and nonfucosylated fc fragments of human immunoglobulin g1
J.Mol.Biol., 368, 2007

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