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PDB: 772 件
7ECJ
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RNA duplex containing C-A base pairs
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献RNA duplex containing C-A base pairs
To Be Published
7ECL
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RNA duplex containing C-Ag-A and U-Ag-A base pair
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献RNA duplex containing C-Ag-A and U-Ag-A base pair
To Be Published
6GHP
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14-3-3sigma in complex with a TASK3 peptide stabilized by semi-synthetic natural product FC-NAc
分子名称: 14-3-3 protein sigma, CHLORIDE ION, Potassium channel subfamily K member 9, ...
著者Andrei, S.A, de Vink, P.J, Brunsveld, L, Ottmann, C, Higuchi, Y.
登録日2018-05-08
公開日2018-08-01
最終更新日2018-10-17
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Rationally Designed Semisynthetic Natural Product Analogues for Stabilization of 14-3-3 Protein-Protein Interactions.
Angew. Chem. Int. Ed. Engl., 57, 2018
7D83
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Crystal structure of HIV-1 integrase catalytic core domain in complex with 2-(tert-butoxy)-2-(2-(3-cyclohexylureido)-3,6-dimethyl-5-(5-methylchroman-6-yl)pyridin-4-yl)acetic acid
分子名称: (2S)-2-[2-(cyclohexylcarbamoylamino)-3,6-dimethyl-5-(5-methyl-3,4-dihydro-2H-chromen-6-yl)pyridin-4-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid, Integrase, SULFATE ION
著者Sugiyama, S, Sekiguchi, Y.
登録日2020-10-07
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Discovery of novel HIV-1 integrase-LEDGF/p75 allosteric inhibitors based on a pyridine scaffold forming an intramolecular hydrogen bond.
Bioorg.Med.Chem.Lett., 33, 2020
1J0O
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High Resolution Crystal Structure of the wild type Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
分子名称: Cytochrome c3, ETHANOL, PROTOPORPHYRIN IX CONTAINING FE
著者Ozawa, K, Yasukawa, F, Kumagai, J, Ohmura, T, Cusanvich, M.A, Tomimoto, Y, Ogata, H, Higuchi, Y, Akutsu, H.
登録日2002-11-19
公開日2003-11-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F.
Biophys.J., 85, 2003
1V9F
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Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli
分子名称: PHOSPHATE ION, Ribosomal large subunit pseudouridine synthase D
著者Mizutani, K, Machida, Y, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2004-01-26
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
1GIR
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CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONET OF IOTA-TOXIN FROM CLOSTRIDIUM PERFRINGENS WITH NADPH
分子名称: IOTA TOXIN COMPONENT IA, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Tsuge, H, Nagahama, M, Nishimura, H, Hisatsune, J, Sakaguchi, Y, Itogawa, Y, Katunuma, N, Sakurai, J.
登録日2001-03-12
公開日2003-01-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
J.MOL.BIOL., 325, 2003
1GIQ
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Crystal Structure of the Enzymatic Componet of Iota-Toxin from Clostridium Perfringens with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, IOTA TOXIN COMPONENT IA
著者Tsuge, H, Nagahama, M, Nishimura, H, Hisatsune, J, Sakaguchi, Y, Itogawa, Y, Katunuma, N, Sakurai, J.
登録日2001-03-12
公開日2003-01-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
J.MOL.BIOL., 325, 2003
1Y1B
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Solution structure of Anemonia elastase inhibitor
分子名称: Elastase inhibitor
著者Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y.
登録日2004-11-18
公開日2005-07-19
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
1J2A
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Structure of E. coli cyclophilin B K163T mutant
分子名称: cyclophilin B
著者Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
登録日2002-12-26
公開日2004-02-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
2E4F
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Crystal Structure of the Cytoplasmic Domain of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2
分子名称: G protein-activated inward rectifier potassium channel 2
著者Inanobe, A, Kurachi, Y.
登録日2006-12-06
公開日2007-06-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.302 Å)
主引用文献Structural Diversity in the Cytoplasmic Region of G Protein-Gated Inward Rectifier K+ Channels
CHANNELS, 1, 2007
2E8I
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Structure of 6-aminohexanoate-dimer hydrolase, D1 mutant
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-aminohexanoate-dimer hydrolase, GLYCEROL, ...
著者Shibata, N, Higuchi, Y, Negoro, S.
登録日2007-01-20
公開日2008-01-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold.
Febs J., 276, 2009
2D28
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Structure of the N-terminal domain of XpsE (crystal form P43212)
分子名称: CACODYLATE ION, type II secretion ATPase XpsE
著者Chen, Y, Shiue, S.-J, Huang, C.-W, Chang, J.-L, Chien, Y.-L, Hu, N.-T, Chan, N.-L.
登録日2005-09-03
公開日2005-09-20
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and Function of the XpsE N-Terminal Domain, an Essential Component of the Xanthomonas campestris Type II Secretion System
J.Biol.Chem., 280, 2005
2D4R
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Crystal structure of TTHA0849 from Thermus thermophilus HB8
分子名称: SULFATE ION, hypothetical protein TTHA0849
著者Nakabayashi, M, Shibata, N, Kuramitsu, S, Higuchi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-23
公開日2005-12-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of a conserved hypothetical protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 A resolution: a putative member of the StAR-related lipid-transfer (START) domain superfamily.
Acta Crystallogr.,Sect.F, 61, 2005
4EAF
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Thymidine phosphorylase from E.coli
分子名称: GLYCEROL, SULFATE ION, Thymidine phosphorylase
著者Timofeev, V.I, Abramchik, Y.A, Esipov, R.S, Kuranova, I.P.
登録日2012-03-22
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Thymidine phosphorylase from E.coli
To be Published
3L3F
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Crystal structure of a PFU-PUL domain pair of Saccharomyces cerevisiae Doa1/Ufd3
分子名称: Protein DOA1
著者Komori, H, Nishimasu, R, Kuno, T, Higuchi, Y.
登録日2009-12-16
公開日2010-11-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of a PFU-PUL Domain Pair of Saccharomyces Cerevisiae Doa1/Ufd3
KOBE J.MED.SCI., 56, 2010
4E9W
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Multicopper Oxidase mgLAC (data2)
分子名称: CHLORIDE ION, COPPER (II) ION, Multicopper oxidase, ...
著者Komori, H, Miyazaki, K, Higuchi, Y.
登録日2012-03-21
公開日2013-03-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献New insights into the catalytic active-site structure of multicopper oxidases.
Acta Crystallogr.,Sect.D, 70, 2014
4O5Y
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O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
分子名称: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
4O5X
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O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine.
分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
2E84
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Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion
分子名称: High-molecular-weight cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
著者Shibata, N, Suto, K, Sato, M, Morimoto, Y, Kitamura, M, Higuchi, Y.
登録日2007-01-17
公開日2008-01-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F)
To be Published
8S9K
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Structure of dimeric FAM111A SPD S541A Mutant
分子名称: GLYCEROL, Serine protease FAM111A
著者Palani, S, Alvey, J.A, Cong, A.T.Q, Schellenberg, M.J, Machida, Y.
登録日2023-03-29
公開日2024-03-20
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Dimerization-dependent serine protease activity of FAM111A prevents replication fork stalling at topoisomerase 1 cleavage complexes.
Nat Commun, 15, 2024
3P1P
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Crystal structure of human 14-3-3 sigma C38N/N166H in complex with TASK-3 peptide
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CHLORIDE ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013
8S9L
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Structure of monomeric FAM111A SPD V347D Mutant
分子名称: SULFATE ION, Serine protease FAM111A
著者Palani, S, Alvey, J.A, Cong, A.T.Q, Schellenberg, M.J, Machida, Y.
登録日2023-03-29
公開日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Dimerization-dependent serine protease activity of FAM111A prevents replication fork stalling at topoisomerase 1 cleavage complexes.
Nat Commun, 15, 2024
3P1Q
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Crystal structure of human 14-3-3 sigma C38N/N166H in complex with TASK-3 Peptide and stabilizer fusicoccin A
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CALCIUM ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013
3P1O
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Crystal structure of human 14-3-3 sigma in complex with TASK-3 peptide and stabilisator Fusicoccin A
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CALCIUM ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013

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