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PDB: 609 results

4OEW
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BU of 4oew by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 6-ethyl-5-iodo-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Chen, T.T, Ren, J, Xu, Y.C.
Deposit date:2014-01-14
Release date:2015-04-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Thermodynamic and structural characterization of halogen bonding in protein-ligand interactions: a case study of PDE5 and its inhibitors.
J.Med.Chem., 57, 2014
3SHZ
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BU of 3shz by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 5-chloro-6-ethyl-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Chen, T.T, Chen, T, Xu, Y.C.
Deposit date:2011-06-17
Release date:2011-08-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.449 Å)
Cite:Utilization of Halogen Bond in Lead Optimization: A Case Study of Rational Design of Potent Phosphodiesterase Type 5 (PDE5) Inhibitors.
J.Med.Chem., 54, 2011
3SHY
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BU of 3shy by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 6-ethyl-5-fluoro-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Chen, T.T, Chen, T, Xu, Y.C.
Deposit date:2011-06-17
Release date:2011-08-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.647 Å)
Cite:Utilization of Halogen Bond in Lead Optimization: A Case Study of Rational Design of Potent Phosphodiesterase Type 5 (PDE5) Inhibitors.
J.Med.Chem., 54, 2011
3SIE
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BU of 3sie by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 5-bromo-6-ethyl-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, cGMP-specific 3',5'-cyclic phosphodiesterase
Authors:Chen, T.T, Chen, T, Xu, Y.C.
Deposit date:2011-06-17
Release date:2011-08-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Utilization of Halogen Bond in Lead Optimization: A Case Study of Rational Design of Potent Phosphodiesterase Type 5 (PDE5) Inhibitors.
J.Med.Chem., 54, 2011
6ZBU
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BU of 6zbu by Molmil
Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with the NcoR1 BBD1 corepressor peptide
Descriptor: GLYCEROL, Nuclear receptor corepressor 1, Nuclear receptor corepressor 1,B-cell lymphoma 6 protein, ...
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-06-09
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
7WX7
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BU of 7wx7 by Molmil
complex of a legionella acetyltransferase VipF and COA/ACO
Descriptor: ACETYL COENZYME *A, COENZYME A, N-acetyltransferase
Authors:Chen, T.T, Lin, Y.L, Zhang, S.J, Han, A.D.
Deposit date:2022-02-14
Release date:2023-02-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Structural basis for the acetylation mechanism of the Legionella effector VipF.
Acta Crystallogr D Struct Biol, 78, 2022
7WX5
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BU of 7wx5 by Molmil
a Legionella acetyltransferase effector VipF
Descriptor: ACETYL COENZYME *A, N-acetyltransferase
Authors:Chen, T.T, Lin, Y.L, Zhang, S.J, Han, A.D.
Deposit date:2022-02-14
Release date:2023-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:Structural basis for the acetylation mechanism of the Legionella effector VipF.
Acta Crystallogr D Struct Biol, 78, 2022
7XGX
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BU of 7xgx by Molmil
Glucosyltransferase
Descriptor: Lgt2, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Chen, T.T, Ouyang, S.Y.
Deposit date:2022-04-07
Release date:2023-04-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural Basis for the Action Mechanism of Legionella Glycosyltransferase.
Small Struct, 2023
7XGV
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BU of 7xgv by Molmil
Legionella glucosyltransferase
Descriptor: Lgt2
Authors:Chen, T.T, Ouyang, S.Y.
Deposit date:2022-04-06
Release date:2023-04-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural Basis for the Action Mechanism of Legionella Glycosyltransferase.
Small Struct, 2023
6Y3E
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BU of 6y3e by Molmil
Scaffold-ligand complex with ligand unmodelled
Descriptor: 1,2-ETHANEDIOL, DODECAETHYLENE GLYCOL, PHOSPHATE ION, ...
Authors:Zacharchenko, T, Lian, L.Y.
Deposit date:2020-02-18
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Human Cyclophilin D Complexed with Inhibitor
To Be Published
6XZZ
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BU of 6xzz by Molmil
Crystal structure of the BCL6 BTB domain in complex with the NCoR1 BBD2 peptide
Descriptor: B-cell lymphoma 6 protein, CHLORIDE ION, Nuclear receptor corepressor 1, ...
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-02-05
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
6Y17
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BU of 6y17 by Molmil
Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with nebulinSH3-NCoR1BBD1
Descriptor: Nebulin,Nuclear receptor corepressor 1, Nuclear receptor corepressor 1,B-cell lymphoma 6 protein, SODIUM ION
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-02-11
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
5HQ5
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BU of 5hq5 by Molmil
Crystal structure of fragment bound with Brd4
Descriptor: 7-methyl-N-(o-tolyl)-[1,2,4]triazolo[4,3-a]pyrimidin-5-amine, Bromodomain-containing protein 4
Authors:Chen, T.T, Xu, Y.C.
Deposit date:2016-01-21
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of fragment bound with Brd4
to be published
5HQ6
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BU of 5hq6 by Molmil
Crystal structure of fragment bound with Brd4
Descriptor: (2R)-2,6-dimethyl-2H-1,4-benzoxazin-3(4H)-one, Bromodomain-containing protein 4
Authors:Chen, T.T, Xu, Y.C.
Deposit date:2016-01-21
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of fragment bound with Brd4
to be published
4FGX
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BU of 4fgx by Molmil
Crystal structure of bace1 with novel inhibitor
Descriptor: Beta-secretase 1, DI(HYDROXYETHYL)ETHER, Inhibitor (2R,5S,8S,12S,13S,16S,19S,22S)-16-(3-amino-3-oxopropyl)-2,13-dibenzyl-12,22-dihydroxy-8-isobutyl-19-isopropyl-3,5,17-trimethyl-4,7,10,15,18,21-hexaoxo-3,6,9,14,17,20-hexaazatricosan-1-oic acid, ...
Authors:Chen, T.T, Chen, W.Y, Li, L, Xu, Y.C.
Deposit date:2012-06-05
Release date:2013-01-16
Last modified:2021-09-15
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Cyanobacterial Peptides as a Prototype for the Design of Potent beta-Secretase Inhibitors and the Development of Selective Chemical Probes for Other Aspartic Proteases
J.Med.Chem., 55, 2012
5HQ7
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BU of 5hq7 by Molmil
Crystal structure of fragment bound with Brd4
Descriptor: Bromodomain-containing protein 4, N-ethyl-6,7-dimethoxyquinazolin-4-amine
Authors:Chen, T.T, Xu, Y.C.
Deposit date:2016-01-21
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of fragment bound with Brd4
to be published
6XWF
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BU of 6xwf by Molmil
Crystal structure of an NCoR1BBD2-BCL6BTB chimera
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, B-cell lymphoma 6 protein, CHLORIDE ION
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-01-23
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
6XXS
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BU of 6xxs by Molmil
Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with the NcoR1 BBD1 corepressor peptide.
Descriptor: B-cell lymphoma 6 protein, Nuclear receptor corepressor 1
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-01-28
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
6XYX
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BU of 6xyx by Molmil
Crystal structure of the BCL6 BTB domain in complex with the NCoR1 BBD corepressor peptide
Descriptor: 1,2-ETHANEDIOL, B-cell lymphoma 6 protein, Nuclear receptor corepressor 1, ...
Authors:Zacharchenko, T, Wright, S.C.
Deposit date:2020-01-31
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone.
Iucrj, 8, 2021
4HXN
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BU of 4hxn by Molmil
Brd4 Bromodomain 1 complex with 4-(2-FLUOROPHENYL)-1,3-THIAZOL-2(3H)-ONE inhibitor
Descriptor: 4-(2-fluorophenyl)-1,3-thiazol-2(3H)-one, Bromodomain-containing protein 4
Authors:Chen, T.T, Cao, D.Y, Chen, W.Y, Xiong, B, Shen, J.K, Xu, Y.C.
Deposit date:2012-11-12
Release date:2013-04-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Fragment-Based Drug Discovery of 2-Thiazolidinones as Inhibitors of the Histone Reader BRD4 Bromodomain.
J.Med.Chem., 56, 2013
4HXP
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BU of 4hxp by Molmil
Brd4 Bromodomain 1 complex with 4-(2-OXO-1,3-OXAZOLIDIN-3-YL)BENZAMIDE inhibitor
Descriptor: 4-(2-oxo-1,3-oxazolidin-3-yl)benzamide, Bromodomain-containing protein 4
Authors:Chen, T.T, Cao, D.Y, Chen, W.Y, Xiong, B, Shen, J.K, Xu, Y.C.
Deposit date:2012-11-12
Release date:2013-04-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Fragment-Based Drug Discovery of 2-Thiazolidinones as Inhibitors of the Histone Reader BRD4 Bromodomain.
J.Med.Chem., 56, 2013
6YBM
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BU of 6ybm by Molmil
Scaffold-ligand complex with ligand unmodelled.
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Peptidyl-prolyl cis-trans isomerase F, ...
Authors:Zacharchenko, T, Lian, L.Y.
Deposit date:2020-03-17
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Scaffold-ligand complex with ligand unmodelled.
To Be Published
4HXK
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BU of 4hxk by Molmil
Brd4 Bromodomain 1 complex with 6,7-DIHYDROTHIENO[3,2-C]PYRIDIN-5(4H)-YL(1H-IMIDAZOL-1-YL)METHANONE inhibitor
Descriptor: 6,7-dihydrothieno[3,2-c]pyridin-5(4H)-yl(1H-imidazol-1-yl)methanone, Bromodomain-containing protein 4
Authors:Chen, T.T, Cao, D.Y, Chen, W.Y, Xiong, B, Shen, J.K, Xu, Y.C.
Deposit date:2012-11-12
Release date:2013-04-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Fragment-Based Drug Discovery of 2-Thiazolidinones as Inhibitors of the Histone Reader BRD4 Bromodomain.
J.Med.Chem., 56, 2013
4HXR
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BU of 4hxr by Molmil
Brd4 Bromodomain 1 complex with N-[3-(2-OXO-2,3-DIHYDRO-1,3-THIAZOL-4-YL)PHENYL]THIOPHENE-2-SULFONAMIDE inhibitor
Descriptor: Bromodomain-containing protein 4, N-[3-(2-oxo-2,3-dihydro-1,3-thiazol-4-yl)phenyl]thiophene-2-sulfonamide
Authors:Chen, T.T, Cao, D.Y, Chen, W.Y, Xiong, B, Shen, J.K, Xu, Y.C.
Deposit date:2012-11-12
Release date:2013-04-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Fragment-Based Drug Discovery of 2-Thiazolidinones as Inhibitors of the Histone Reader BRD4 Bromodomain.
J.Med.Chem., 56, 2013
4HXO
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BU of 4hxo by Molmil
Brd4 Bromodomain 1 complex with 3-{[(3-METHYL-1,2-OXAZOL-5-YL)METHYL]SULFANYL}[1,2,4]TRIAZOLO[4,3-A]PYRIDINE inhibitor
Descriptor: 3-{[(3-methyl-1,2-oxazol-5-yl)methyl]sulfanyl}[1,2,4]triazolo[4,3-a]pyridine, Bromodomain-containing protein 4
Authors:Chen, T.T, Cao, D.Y, Chen, W.Y, Xiong, B, Shen, J.K, Xu, Y.C.
Deposit date:2012-11-12
Release date:2013-04-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Fragment-Based Drug Discovery of 2-Thiazolidinones as Inhibitors of the Histone Reader BRD4 Bromodomain.
J.Med.Chem., 56, 2013

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