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PDB: 77 results

1QZL
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BU of 1qzl by Molmil
GCATGCT + Cobalt
Descriptor: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3', COBALT (II) ION
Authors:Cardin, C.J, Gan, Y, Thorpe, J.H, Teixeira, S.C.M, Gale, B.C, Moraes, M.I.A.
Deposit date:2003-09-17
Release date:2003-10-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Metal Ion Distribution and Stabilisation of the DNA Quadruplex Structure Formed by d(GCATGCT)
To be published
1QYL
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BU of 1qyl by Molmil
GCATGCT + Vanadium
Descriptor: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3', VANADIUM ION
Authors:Cardin, C.J, Gan, Y, Thorpe, J.H, Teixeira, S.C.M, Gale, B.C, Moraes, M.I.A.
Deposit date:2003-09-11
Release date:2003-10-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:Metal Ion Distribution and Stabilisation of the DNA Quadruplex Structure Formed by d(GCATGCT)
To be Published
3T86
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BU of 3t86 by Molmil
d(GCATGCT) + calcium
Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3'), POTASSIUM ION
Authors:Cardin, C.J, Gan, Y.
Deposit date:2011-08-01
Release date:2012-06-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel structure for the d(GCATGCT) quadruplex in the presence of nickel and cobalt aqueous cations : comparison with the vanadium, barium and calcium-bound structural motif.
To be Published
3U38
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BU of 3u38 by Molmil
Intercalation of lambda-[Ru(phen)2(dppz)]2+ into d(CCGGTACCGG)2
Descriptor: 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3', BARIUM ION, Lambda-Ru(phen)2(dppz) complex
Authors:Cardin, C.J, Hall, J.P, Niyazi, H.
Deposit date:2011-10-05
Release date:2012-07-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of lambda-[Ru(phen)2dppz]2+ with oligonucleotides containing TA/TA and AT/AT steps show two intercalation modes
Nat Chem, 4, 2012
3QF8
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BU of 3qf8 by Molmil
X-ray crystal structure of the ruthenium complex [Ru(tap)2(dppz)]2+ bound to d(TCGGCGCCGA) at medium resolution
Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION, Ru(tap)2(dppz) complex
Authors:Cardin, C.J, Hall, J.P.
Deposit date:2011-01-21
Release date:2011-10-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand.
Proc.Natl.Acad.Sci.USA, 108, 2011
3QRN
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BU of 3qrn by Molmil
X-ray crystal structure of the ruthenium complex [Ru(tap)2(dppz)]2+ bound to d(TCGGCGCCGA)at high resolution
Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION, Ru(tap)2(dppz) complex
Authors:Cardin, C.J, Hall, J.P.
Deposit date:2011-02-18
Release date:2011-10-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand.
Proc.Natl.Acad.Sci.USA, 108, 2011
1EG6
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BU of 1eg6 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF D(CG(5-BRU)ACG) COMPLEXES TO A PHENAZINE
Descriptor: 5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3', 9-BROMO-PHENAZINE-1-CARBOXYLIC ACID (2-DIMETHYLAMINO-ETHYL)-AMIDE, BROMIDE ION, ...
Authors:Cardin, C.J, Denny, W.A, Hobbs, J.R, Thorpe, J.H.
Deposit date:2000-02-14
Release date:2001-01-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Guanine specific binding at a DNA junction formed by d[CG(5-BrU)ACG](2) with a topoisomerase poison in the presence of Co(2+) ions.
Biochemistry, 39, 2000
1NVN
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BU of 1nvn by Molmil
Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 1.8 A
Descriptor: 5'-D(CpCpGpGpTpApCpCpGpG)-3', CALCIUM ION
Authors:Cardin, C.J, Gale, B.C, Thorpe, J.H, Teixeira, S.C.M, Gan, Y, Moraes, M.I.A.A, Brogden, A.L.
Deposit date:2003-02-04
Release date:2003-02-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of two Holliday junctions formed by the sequences TCGGTACCGA and CCGGTACCGG
To be Published
1NT8
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BU of 1nt8 by Molmil
Structural Characterisation of the Holliday junction formed by the sequence CCGGTACCGG at 2.00 A
Descriptor: 5'-d(CpCpGpGpTpApCpCpGpG)-3', CALCIUM ION
Authors:Cardin, C.J, Gale, B.C, Thorpe, J.H, Texieira, S.C.M, Gan, Y, Moraes, M.I.A.A, Brogden, A.L.
Deposit date:2003-01-29
Release date:2003-02-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Analysis of two Holliday Junctions formed by the sequences TCGGTACCGA and CCGGTACCGG
To be Published
1NQS
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BU of 1nqs by Molmil
Structural Characterisation of the Holliday Junction formed by the sequence d(TCGGTACCGA) at 1.97 A
Descriptor: 5'-d(TpCpGpGpTpApCpCpGpA)-3', CALCIUM ION
Authors:Cardin, C.J, Gale, B.C, Thorpe, J.H, Texieira, S.C.M, Gan, Y, Moraes, M.I.A.A, Brogden, A.L.
Deposit date:2003-01-22
Release date:2003-02-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Analysis of two Holliday junctions formed by the sequences TCGGTACCGA and CCGGTACCGG
To be Published
1NVY
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BU of 1nvy by Molmil
Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4
Descriptor: STRONTIUM ION, d(TCGGTACCGA)4
Authors:Cardin, C.J, Thorpe, J.H, Gale, B.C, Teixeira, S.C.M.
Deposit date:2003-02-05
Release date:2003-02-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Strontium, a MAD taerget for the DNA Holliday junction
To be published
1QYK
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BU of 1qyk by Molmil
GCATGCT + Barium
Descriptor: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3', BARIUM ION
Authors:Cardin, C.J, Gan, Y, Thorpe, J.H, Teixeira, S.C.M, Gale, B.C, Moraes, M.I.A.
Deposit date:2003-09-11
Release date:2003-10-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Metal Ion Distribution and Stabilization of the DNA Quadruplex Structure Formed by d(GCATGCT)
To be published
7OTB
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BU of 7otb by Molmil
Ruthenium polypridyl complex bound to a unimolecular chair-form G-quadruplex
Descriptor: BARIUM ION, DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*TP*GP*GP*G)-3'), POTASSIUM ION, ...
Authors:McQuaid, K.T, Cardin, C.J, Hall, J.P, Paterson, N.G, Baumgaertner, L.
Deposit date:2021-06-09
Release date:2022-04-06
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Ruthenium Polypyridyl Complex Bound to a Unimolecular Chair-Form G-Quadruplex.
J.Am.Chem.Soc., 144, 2022
5JEV
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BU of 5jev by Molmil
del-[Ru(phen)2(dppz]2+ bound to d(TCGGCGCCGA) with Cobalt hexammine
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), Delta-Ru(phen)2(dppz) complex
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2016-04-19
Release date:2016-09-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.
Nucleic Acids Res., 44, 2016
5NBE
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BU of 5nbe by Molmil
[Ru(TAP)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2
Descriptor: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), lambda-[Ru(tap2-dppz-CN)]2+
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2017-03-01
Release date:2018-03-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.
Chemistry, 24, 2018
5LS8
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BU of 5ls8 by Molmil
Light-activated ruthenium complex bound to a DNA quadruplex
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*A)-3'), POTASSIUM ION, delta-[Ru(tap2-dppz-CN)]2+, ...
Authors:McQuaid, K.T, Abell, H, Hall, J.P, Cardin, C.J.
Deposit date:2016-08-22
Release date:2018-01-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Studies Reveal Enantiospecific Recognition of a DNA G-Quadruplex by a Ruthenium Polypyridyl Complex.
Angew.Chem.Int.Ed.Engl., 58, 2019
6G8S
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BU of 6g8s by Molmil
[Ru(TAP)2(11,12-CN2-dppz)]2+ bound to d(CCGGACCCGG/CCGGGTCCGG)2
Descriptor: BARIUM ION, DNA (5'-D(*CP*CP*GP*GP*AP*CP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*GP*TP*CP*CP*GP*G)-3'), ...
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2018-04-09
Release date:2019-04-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.
Chemistry, 24, 2018
6GLD
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BU of 6gld by Molmil
Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2
Descriptor: BARIUM ION, Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine), d(TCGGCGCCGA)2
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2018-05-23
Release date:2019-06-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.061 Å)
Cite:X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.
Chemistry, 24, 2018
4LTH
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BU of 4lth by Molmil
Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (3/7)
Descriptor: BARIUM ION, DNA, Ru(tap)2(dppz) complex
Authors:Hall, J.P, Sanchez-Weatherby, J, Cardin, C.J.
Deposit date:2013-07-23
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking.
J.Am.Chem.Soc., 136, 2014
4MJ9
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BU of 4mj9 by Molmil
lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer
Descriptor: (10-methyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+), BARIUM ION, CHLORIDE ION, ...
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2013-09-03
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru dppz Complexes to DNA
Organometallics, 2015
4X18
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BU of 4x18 by Molmil
[Ru(TAP)2(dppz-11-Me)]2+ bound to d(TCGGCGCCGA)
Descriptor: (11-methyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium, BARIUM ION, CHLORIDE ION, ...
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2014-11-24
Release date:2015-05-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru-dppz Complexes to DNA
Organometallics, 2015
4X1A
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BU of 4x1a by Molmil
Lambda-[Ru(TAP)2(dppz-10,12-Me)]2+ bound to d(TCGGCGCCGA)
Descriptor: (10,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium, BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3')
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2014-11-24
Release date:2015-05-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru-dppz Complexes to DNA
Organometallics, 2015
4YMC
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BU of 4ymc by Molmil
Lambda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGATCCGG)2
Descriptor: BARIUM ION, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3'), ...
Authors:Gurung, S.P, Hall, J.P, Cardin, C.J.
Deposit date:2015-03-06
Release date:2016-03-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Reversal of a single base pair step controls guanine photo-oxidation by an intercalating Ru(II) dipyridophenazine complex.
To Be Published
6HWG
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BU of 6hwg by Molmil
[Ru(phen)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2
Descriptor: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), Ruthenium (bis-(phenanthroline)) (11-cyano-dipyridophenazine)
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2018-10-11
Release date:2019-10-30
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:[Ru(phen)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2
To Be Published
5JEU
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BU of 5jeu by Molmil
del-[Ru(phen)2(dppz)]2+ bound to d(TCGGCGCCGA) with Ba2+
Descriptor: BARIUM ION, CHLORIDE ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), ...
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2016-04-19
Release date:2016-09-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.
Nucleic Acids Res., 44, 2016

 

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