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PDB: 97 results

4BIP
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BU of 4bip by Molmil
Homology model of coxsackievirus A7 (CAV7) full capsid proteins.
Descriptor: VP1, VP2, VP3
Authors:Seitsonen, J.J.T, Shakeel, S, Susi, P, Pandurangan, A.P, Sinkovits, R.S, Hyvonen, H, Laurinmaki, P, Yla-Pelto, J, Topf, M, Hyypia, T, Butcher, S.J.
Deposit date:2013-04-12
Release date:2013-10-02
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.23 Å)
Cite:Combined Approaches to Flexible Fitting and Assessment in Virus Capsids Undergoing Conformational Change.
J.Struct.Biol., 185, 2014
5TF6
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Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
Descriptor: CHLORIDE ION, GLYCEROL, POTASSIUM ION, ...
Authors:Montemayor, E.J, Brow, D.A, Butcher, S.E.
Deposit date:2016-09-24
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol, 73, 2017
6PPP
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BU of 6ppp by Molmil
Structure of S. pombe Lsm2-8 with processed U6 snRNA
Descriptor: Mimic of processed U6 snRNA, Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, ...
Authors:Montemayor, E.J, Butcher, S.E.
Deposit date:2019-07-08
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
6ZCK
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BU of 6zck by Molmil
Coxsackievirus B4 in complex with capsid binder compound 48
Descriptor: 4-[(6-propoxynaphthalen-2-yl)sulfonylamino]benzoic acid, Capsid protein VP1, Capsid protein VP2, ...
Authors:Flatt, J.W, Domanska, A, Butcher, S.J.
Deposit date:2020-06-11
Release date:2021-03-17
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol, 4, 2021
7Z51
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BU of 7z51 by Molmil
Tick-borne encephalitis virus Kuutsalo-14
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Pulkkinen, L.I.A, Barrass, S.V, Anastasina, M, Butcher, S.J.
Deposit date:2022-03-07
Release date:2022-04-20
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular Organisation of Tick-Borne Encephalitis Virus.
Viruses, 14, 2022
8AXX
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BU of 8axx by Molmil
Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Loflund, B, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-09-01
Release date:2022-10-19
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022
6GZV
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BU of 6gzv by Molmil
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses
Descriptor: 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid, Capsid protein VP1, Capsid protein VP2, ...
Authors:Geraets, J.A, Flatt, J.W, Domanska, A, Butcher, S.J.
Deposit date:2018-07-05
Release date:2019-06-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4 Å)
Cite:A novel druggable interprotomer pocket in the capsid of rhino- and enteroviruses.
Plos Biol., 17, 2019
6RJF
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BU of 6rjf by Molmil
Echovirus 1 intact particle
Descriptor: PALMITIC ACID, VP1, VP2, ...
Authors:Domanska, A, Ruokolainen, V.P, Pelliccia, M, Laajala, M.A, Marjomaki, V.S, Butcher, S.J.
Deposit date:2019-04-26
Release date:2019-06-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Extracellular Albumin and Endosomal Ions Prime Enterovirus Particles for Uncoating That Can Be Prevented by Fatty Acid Saturation.
J.Virol., 93, 2019
6GV4
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BU of 6gv4 by Molmil
High-resolution Cryo-EM of Fab-labeled human parechovirus 3
Descriptor: AT12-015 antibody variable heavy, AT12-015 antibody variable light, RNA (5'-R(*UP*GP*GP*UP*AP*UP*UP*U)-3'), ...
Authors:Domanska, A, Flatt, J.W, Jukonen, J.J.J, Geraets, J.A, Butcher, S.J.
Deposit date:2018-06-20
Release date:2018-11-21
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:A 2.8-Angstrom-Resolution Cryo-Electron Microscopy Structure of Human Parechovirus 3 in Complex with Fab from a Neutralizing Antibody.
J.Virol., 93, 2019
8AW6
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BU of 8aw6 by Molmil
Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Loflund, B, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-08-29
Release date:2022-10-26
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022
8AT5
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BU of 8at5 by Molmil
native Coxsackievirus A9
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-08-22
Release date:2022-11-16
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022
5UQJ
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BU of 5uqj by Molmil
Structure of yeast Usb1
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Didychuk, A.L, Montemayor, E.J, Butcher, S.E.
Deposit date:2017-02-08
Release date:2017-08-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
2ADT
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BU of 2adt by Molmil
NMR structure of a 30 kDa GAAA tetraloop-receptor complex.
Descriptor: 43-MER
Authors:Davis, J.H, Tonelli, M, Scott, L.G, Jaeger, L, Williamson, J.R, Butcher, S.E.
Deposit date:2005-07-20
Release date:2005-07-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop-Receptor Complex
J.Mol.Biol., 351, 2005
1N7U
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BU of 1n7u by Molmil
THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM I
Descriptor: ACETATE ION, Adsorption protein P2, CALCIUM ION
Authors:Xu, L, Benson, S.D, Butcher, S.J, Bamford, D.H, Burnett, R.M.
Deposit date:2002-11-18
Release date:2003-04-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Receptor Binding Protein P2 of PRD1, a Virus Targeting Antibiotic-Resistant Bacteria, Has a Novel Fold Suggesting Multiple Functions.
Structure, 11, 2003
1N7V
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BU of 1n7v by Molmil
THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM III
Descriptor: ACETATE ION, Adsorption protein P2, CALCIUM ION
Authors:Xu, L, Benson, S.D, Butcher, S.J, Bamford, D.H, Burnett, R.M.
Deposit date:2002-11-18
Release date:2003-04-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Receptor Binding Protein P2 of PRD1, a Virus Targeting Antibiotic-Resistant Bacteria, Has a Novel Fold Suggesting Multiple Functions.
Structure, 11, 2003
5V1M
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BU of 5v1m by Molmil
Structure of human Usb1 with uridine 5'-monophosphate
Descriptor: CHLORIDE ION, GLYCEROL, U6 snRNA phosphodiesterase, ...
Authors:Montemayor, E.J, Didychuk, A.L, Butcher, S.E.
Deposit date:2017-03-02
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
6ZCL
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BU of 6zcl by Molmil
Coxsackievirus B3 in complex with capsid binder compound 17
Descriptor: 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid, MYRISTIC ACID, capsid protein VP1, ...
Authors:Domanska, A, Flatt, J.W, Butcher, S.J.
Deposit date:2020-06-11
Release date:2021-03-17
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol, 4, 2021
4KFT
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BU of 4kft by Molmil
Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with ATP-gammaS
Descriptor: CHLORIDE ION, CITRATE ANION, Genome packaging NTPase B204, ...
Authors:Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S.
Deposit date:2013-04-27
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.241 Å)
Cite:The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2.
J.Virol., 87, 2013
6ZMS
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BU of 6zms by Molmil
Coxsackievirus B4 strain E2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Flatt, J.W, Domanska, A, Butcher, S.J.
Deposit date:2020-07-03
Release date:2021-03-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol, 4, 2021
1Z2J
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BU of 1z2j by Molmil
Solution structure of the HIV-1 frameshift inducing element
Descriptor: HIV-1 frameshift site RNA
Authors:Staple, D.W, Butcher, S.E.
Deposit date:2005-03-08
Release date:2005-06-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element.
J.Mol.Biol., 349, 2005
2VVD
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BU of 2vvd by Molmil
Crystal structure of the receptor binding domain of the spike protein P1 from bacteriophage PM2
Descriptor: CALCIUM ION, SPIKE PROTEIN P1
Authors:Abrescia, N.G.A, Grimes, J.M, Kivela, H.K, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
Deposit date:2008-06-06
Release date:2008-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2.
Mol.Cell, 31, 2008
1UVK
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BU of 1uvk by Molmil
The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
4KFU
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BU of 4kfu by Molmil
Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMPPCP
Descriptor: CITRATE ANION, Genome packaging NTPase B204, MAGNESIUM ION, ...
Authors:Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S.
Deposit date:2013-04-27
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2.
J.Virol., 87, 2013
1UVM
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BU of 1uvm by Molmil
The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5NT RNA conformation A
Descriptor: 5'-R(*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
4KFR
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BU of 4kfr by Molmil
Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with sulfate
Descriptor: Genome packaging NTPase B204, MAGNESIUM ION, SULFATE ION
Authors:Happonen, L.J, Oksanen, E, Goldman, A, Kajander, T, Butcher, S.
Deposit date:2013-04-27
Release date:2013-05-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.956 Å)
Cite:The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2.
J.Virol., 87, 2013

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