7P7X
| Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (holo form). | Descriptor: | ACETATE ION, Aminotransferase class IV, PHOSPHATE ION, ... | Authors: | Boyko, K.M, Nikolaeva, A.Y, Bakunova, A.K, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O. | Deposit date: | 2021-07-20 | Release date: | 2021-07-28 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The Uncommon Active Site of D-Amino Acid Transaminase from Haliscomenobacter hydrossis : Biochemical and Structural Insights into the New Enzyme. Molecules, 26, 2021
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3TN7
| Crystal structure of short-chain alcohol dehydrogenase from hyperthermophilic archaeon Thermococcus sibiricus complexed with 5-hydroxy-NADP | Descriptor: | 5-hydroxy-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, GLYCEROL, Short-chain alcohol dehydrogenase | Authors: | Boyko, K.M, Polyakov, K.M, Bezsudnova, E.Y, Stekhanova, T.N, Gumerov, V.M, Mardanov, A.V, Ravin, N.V, Skryabin, K.G, Kovalchuk, M.V, Popov, V.O. | Deposit date: | 2011-09-01 | Release date: | 2012-08-15 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.68 Å) | Cite: | Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus. Biochimie, 94, 2012
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7Q6B
| mRubyFT/S148I, a mutant of blue-to-red fluorescent timer in its blue state | Descriptor: | mRubyFT S148I, a mutant of blue-to-red fluorescent timer | Authors: | Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Dorovatovskii, P.V, Khrenova, M.G, Subach, O.M, Popov, V.O, Subach, F.M. | Deposit date: | 2021-11-06 | Release date: | 2023-04-12 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Combined Structural and Computational Study of the mRubyFT Fluorescent Timer Locked in Its Blue Form. Int J Mol Sci, 24, 2023
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8C0N
| Crystal structure of the red form of the mTagFT fluorescent timer | Descriptor: | Blue-to-red TagFT fluorescent timer | Authors: | Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Agapova, Y.K, Subach, O.M, Popov, V.O, Subach, F.V. | Deposit date: | 2022-12-19 | Release date: | 2023-03-08 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Blue-to-Red TagFT, mTagFT, mTsFT, and Green-to-FarRed mNeptusFT2 Proteins, Genetically Encoded True and Tandem Fluorescent Timers. Int J Mol Sci, 24, 2023
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9INK
| Crystal structure of beta-carotene-binding protein (BBP) from Schistocerca gregaria complexed with beta-carotene | Descriptor: | BETA-CAROTENE, Yellow protein of the takeout family | Authors: | Boyko, K.M, Varfolomeeva, L.A, Egorkin, N.A, Popov, V.O, Sluchanko, N.N. | Deposit date: | 2024-07-08 | Release date: | 2024-09-18 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of the locust beta-carotene-binding protein (BBP) complexed with beta-carotene To Be Published
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5CE8
| Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis | Descriptor: | Branched-chain amino acid aminotransferase, DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE | Authors: | Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O. | Deposit date: | 2015-07-06 | Release date: | 2016-02-24 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for L-amino acids and R-amines. Extremophiles, 20, 2016
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5CM0
| Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans | Descriptor: | Branched-chain transaminase, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE | Authors: | Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O. | Deposit date: | 2015-07-16 | Release date: | 2016-09-14 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Thermostable Branched-Chain Amino Acid Transaminases From the Archaea Geoglobus acetivorans and Archaeoglobus fulgidus : Biochemical and Structural Characterization. Front Bioeng Biotechnol, 7, 2019
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5E25
| Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans complexed with alpha-ketoglutarate | Descriptor: | 2-OXOGLUTARIC ACID, PYRIDOXAL-5'-PHOSPHATE, branched-chain aminotransferase | Authors: | Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O. | Deposit date: | 2015-09-30 | Release date: | 2016-10-05 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Thermostable Branched-Chain Amino Acid Transaminases From the Archaea Geoglobus acetivorans and Archaeoglobus fulgidus : Biochemical and Structural Characterization. Front Bioeng Biotechnol, 7, 2019
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7PPP
| Crystal structure of ZAD-domain of ZNF_276 protein from rabbit. | Descriptor: | ZINC ION, Zinc finger protein 276 | Authors: | Boyko, K.M, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-14 | Release date: | 2021-12-08 | Last modified: | 2024-06-19 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
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7QGK
| The mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer in its red state | Descriptor: | MAGNESIUM ION, The red form of the mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer | Authors: | Boyko, K.M, Nikolaeva, A.Y, Gaivoronskii, F.A, Vlaskina, A.V, Subach, O.M, Popov, V.O, Subach, F.V. | Deposit date: | 2021-12-08 | Release date: | 2022-03-23 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The mRubyFT Protein, Genetically Encoded Blue-to-Red Fluorescent Timer. Int J Mol Sci, 23, 2022
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5MWC
| Crystal structure of the genetically-encoded green calcium indicator NTnC in its calcium bound state | Descriptor: | CALCIUM ION, genetically-encoded green calcium indicator NTnC | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Rakitina, T.V, Popov, V.O, Subach, O.M, Barykina, N.V, Subach, F.V. | Deposit date: | 2017-01-18 | Release date: | 2018-02-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Enchanced variant of genetically-encoded green calcium indicator NTnC To Be Published
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6THQ
| Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis with norvaline | Descriptor: | 2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID, Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Boyko, K.M, Nikolaeva, A.Y, Bezsudnova, E.Y, Popov, V.O. | Deposit date: | 2019-11-21 | Release date: | 2020-09-30 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Three-Dimensional Structure of Branched-Chain Amino Acid Transaminase from Thermoproteus uzoniensis in Complex with L-Norvaline Crystallography Reports, 2020
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6TTB
| Crystal structure of NAD-dependent formate dehydrogenase from Staphylococcus aureus in complex with NAD | Descriptor: | Formate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Boyko, K.M, Pometun, A.A, Nikolaeva, A.Y, Kargov, I.S, Yurchenko, T.S, Savin, S.S, Popov, V.O, Tishkov, V.I. | Deposit date: | 2019-12-26 | Release date: | 2021-01-13 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of NAD-dependent formate dehydrogenase from Staphylococcus aureus in complex with NAD To Be Published
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4NPO
| Crystal structure of protein with unknown function from Deinococcus radiodurans at P61 spacegroup | Descriptor: | ACETATE ION, ACETYL GROUP, GLYCEROL, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Shabalin, I.G, Shumilin, I.A, Dorovatovsky, P.V, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-22 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Crystal structure of protein with unknown function at P61 spacegroup To be Published
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4NS4
| Crystal structure of cold-active estarase from Psychrobacter cryohalolentis K5T | Descriptor: | Alpha/beta hydrolase fold protein | Authors: | Boyko, K.M, Petrovskaya, L.E, Gorbacheva, M.A, Korgenevsky, D.A, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-28 | Release date: | 2015-01-07 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Three-dimentional structure of an esterse from Psychrobacter cryohalolentis K5T provides clues to unusual thermostability of a cold-active enzyme To be Published
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4NPA
| Scrystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup | Descriptor: | DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Putative uncharacterized protein, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Dorovatovsky, P.V, Lipkin, A.V, Minor, W, Shumilin, I.A, Popov, V.O. | Deposit date: | 2013-11-21 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup To be Published
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7POK
| Crystal structure of ZAD-domain of Pita protein from D.melanogaster | Descriptor: | LD15650p, ZINC ION | Authors: | Boyko, K.M, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-09 | Release date: | 2021-12-08 | Last modified: | 2022-07-20 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
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7POH
| Crystal structure of ZAD-domain of Serendipity-d protein from D.melanogaster | Descriptor: | Serendipity locus protein delta, ZINC ION | Authors: | Boyko, K.M, Kachalova, G.S, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-09 | Release date: | 2021-12-08 | Last modified: | 2024-06-19 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
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7PO9
| Crystal structure of ZAD-domain of M1BP protein from D.melanogaster | Descriptor: | LD30467p, ZINC ION | Authors: | Boyko, K.M, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-08 | Release date: | 2021-12-08 | Last modified: | 2024-06-19 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
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4H05
| Crystal structure of aminoglycoside-3'-phosphotransferase of type VIII | Descriptor: | Aminoglycoside-O-phosphotransferase VIII | Authors: | Boyko, K.M, Gorbacheva, M.A, Danilenko, V.N, Alekseeva, M.G, Korzhenevskiy, D.A, Dorovatovskiy, P.V, Lipkin, A.V, Popov, V.O. | Deposit date: | 2012-09-07 | Release date: | 2014-04-09 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structural characterization of the novel aminoglycoside phosphotransferase AphVIII from Streptomyces rimosus with enzymatic activity modulated by phosphorylation. Biochem.Biophys.Res.Commun., 477, 2016
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4HGX
| Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand | Descriptor: | ACETATE ION, Xylose isomerase domain containing protein, ZINC ION | Authors: | Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Dorovatovsky, P.V, Rakitina, T.V, Lipkin, A.V, Shumilin, I.A, Minor, W, Popov, V.O. | Deposit date: | 2012-10-09 | Release date: | 2012-10-24 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand To be Published
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4HX0
| Crystal structure of a putative nucleotidyltransferase (TM1012) from Thermotoga maritima at 1.87 A resolution | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-BUTANEDIOL, Putative nucleotidyltransferase TM1012, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Lipkin, A.V, Popov, V.O, Kovalchuk, M.V, Shumilin, I.A, Minor, W, Shabalin, I.G, Golubev, A.M. | Deposit date: | 2012-11-09 | Release date: | 2013-09-11 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.87 Å) | Cite: | Crystal structure of putative nucleotidyltransferase with two MPD molecules in the active site. To be Published
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7B1X
| Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library | Descriptor: | esterase PMGL3 | Authors: | Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O. | Deposit date: | 2020-11-25 | Release date: | 2021-11-03 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure. Biomolecules, 11, 2021
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6XU4
| Crystal structure of the genetically-encoded FGCaMP calcium indicator in its calcium-bound state | Descriptor: | CALCIUM ION, FGCamp | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Barykina, N.V, Subach, O.M, Subach, F.V. | Deposit date: | 2020-01-17 | Release date: | 2020-04-15 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (3.18 Å) | Cite: | FGCaMP7, an Improved Version of Fungi-Based Ratiometric Calcium Indicator for In Vivo Visualization of Neuronal Activity. Int J Mol Sci, 21, 2020
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6XW2
| Crystal structure of the bright genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein | Descriptor: | CALCIUM ION, Genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein, SULFATE ION | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Lazarenko, V.A, Subach, O.M, Subach, F.V. | Deposit date: | 2020-01-22 | Release date: | 2020-01-29 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein. Int J Mol Sci, 21, 2020
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